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DOE OSTI2021

Fluorescence Assay for Tolyporphins Amidst Abundant Chlorophyll in Crude Cyanobacterial Extracts

Abstract Tolyporphins are distinctive tetrapyrrole natural products found singularly in a filamentous cyanobacterial‐microbial holobiont (termed HT‐58‐2) from Micronesia. The absorption and fluorescence features of tolyporphins resemble those of chlorophyll a , complicating direct analysis of culture samples. Treatment of the crude (unfractionated) organic extract (CH 2 Cl 2 /2‐propanol, 1:1) of HT‐58‐2 cultures with NaBH 4 in methanol causes reduction of the peripheral ketone auxochromes, whereupon tolyporphins (predominantly 7,17‐dioxobacteriochlorins) exhibit a bathochromic shift ( λ abs ˜ 676 → ˜ 700 nm) and chlorophyll a (a 13 1 ‐oxochlorin) exhibits a hypsochromic shift ( λ abs 665 → 634 nm). Fluorescence excitation spectroscopy (at 368 and 491 nm with λ em 710 nm) enabled detection of reduced tolyporphins amidst abundant reduced chlorophyll a (1:19 ratio), a detection sensitivity >5 times that without reduction. The resulting assay combines simple sample preparation from non‐axenic cultures at microscale quantities (2 mL, 2 μ m ), absence of any fractionation procedures, and fluorescence detection. Tolyporphins were readily detected in cultures of HT‐58‐2 at reasonable growth periods in the absence of environmental stressors, which was not possible previously.

Nguyen, Kathy‐Uyen↗

DOE OSTI2019

High‐throughput screening of aqueous biphasic systems with ionic liquids as additives for extraction and purification of enveloped virus‐like particles

Due to their unique properties, virus‐like particles (VLPs) have been portrayed as a promising high‐value biopharmaceutical in VLP‐based vaccination and cancer therapy. Nevertheless, due to limited physical and economical capabilities of the current downstream processing of VLPs, their production is still difficult and seen as a major problem that needs to be tackled. In this work, high‐throughput screening on a liquid handling station (LHS) has been implemented for efficient selection of adequate polymer‐salt aqueous biphasic systems (ABS) for extraction and purification of enveloped Hepatitis C virus pseudoparticles (HCVpp). The effect of polyethylene glycol (PEG) molecular weight and salt type (citrate, sulfate, and phosphate) was first evaluated. Furthermore, to optimize extraction parameters, the effect of pH and tie‐line lengths (TLL) was also addressed. For the most promising ABS and extraction conditions, the addition of ten ionic liquids (ILs) as adjuvants was investigated. Insights on the chemical features of ILs that impact HCV‐VLPs partitioning are highlighted. Finally, the potential of studied ABS containing ILs as adjuvants in the extraction and purification of VLPs from cell culture supernatants was addressed. The 100% extraction efficiency of VLPs in the PEG‐rich phase was achieved, and VLP purity was increased compared to the system without IL. In conclusion, these promising results show that ILs can be very effective in modulating the phase properties of polymer‐salt ABS, achieving high HCV‐VLP purification.

Marchel, Mateusz↗

NASA NTRS1992

Mesoscale air-sea interactions related to tropical and extratropical storms in the Gulf of Mexico

Observations of the lower atmosphere of the northwestern Gulf of Mexico from November 1982 to mid-February 1983 were studied in which seven significant cyclones were generated in the northwestern gulf. It was found that all seven storms occurred when the vorticity correlate of the horizontal air temperature difference was about 3-5 C above the climatological mean difference. It is shown that a maximum in the frequency of tropical storms within the Gulf of Mexico exists some 275 km south of the Mississippi delta at 27 deg N, 90 deg W. This maximum is a result of only those storms which originate within the gulf. Two plausible effects of the Loop Current and its rings on tropical storms are discussed. One is that these ocean features are large and consolidated heat and moisture sources from which a nearby slowly moving atmospheric disturbance can extract energy. The second is that of the cyclonic vorticity that can be generated in the lower atmosphere by such oceanographic features.

Lewis, James K.↗

NASA NTRS1991

Far-ultraviolet mapping of the Cygnus Loop with the Voyager 2 Ultraviolet Spectrometer

FUV maps of the Cygnus Loop made using spectroscopic data from the Voyager 2 Ultraviolet Spectrometer are presented. Emission line features at about 980 and about 1035 A dominate the 500-1700 A spectra of the Cygnus Loop as observed with Voyager. Maps were generated in the light of these two features. The 980 and 1035 A maps are compared with X-ray and optical images of the Cygnus Loop that have been sampled in the same manner. From this comparison it is clear that the 980 A feature arises mainly from regions of bright optical emission, whereas the 1035 A emission more closely resembles the X-ray emission. This general impression can be confirmed by inspection of the spectra as a function of position. Spectra extracted from positions corresponding to the primary shock front show the 1035 A feature to be relatively strong, while the 980 A feature is brighter when substantial optical emission is present within the aperture.

Blair, William P.↗

DOE OSTI2014

SU-E-I-85: Exploring the 18F-Fluorodeoxyglucose PET Characteristics in Staging of Esophageal Squamous Cell Carcinoma

Purpose: The aim of this study was to explore the characteristics derived from 18F-fluorodeoxyglucose (18F-FDG) PET image and assess its capacity in staging of esophageal squamous cell carcinoma (ESCC). Methods: 26 patients with newly diagnosed ESCC who underwent 18F-FDG PET scan were included in this study. Different image-derived indices including the standardized uptake value (SUV), gross tumor length, texture features and shape feature were considered. Taken the histopathologic examination as the gold standard, the extracted capacities of indices in staging of ESCC were assessed by Kruskal-Wallis test and Mann-Whitney test. Specificity and sensitivity for each of the studied parameters were derived using receiver-operating characteristic curves. Results: 18F-FDG SUVmax and SUVmean showed statistically significant capability in AJCC and TNM stages. Texture features such as ENT and CORR were significant factors for N stages(p=0.040, p=0.029). Both FDG PET Longitudinal length and shape feature Eccentricity (EC) (p≤0.010) provided powerful stratification in the primary ESCC AJCC and TNM stages than SUV and texture features. Receiver-operating-characteristic curve analysis showed that tumor textural analysis can capability M stages with higher sensitivity than SUV measurement but lower in T and N stages. Conclusion: The 18F-FDG image-derived characteristics of SUV, textural features and shape feature allow for good stratification AJCC and TNM stage in ESCC patients.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2021

Fission Fragment Intrinsic Spins and Their Correlations

The intrinsic spins and their correlations are the least understood characteristics of fission fragments from both theoretical and experimental points of view. In many nuclear reactions, the emerging fragments are typically excited and acquire an intrinsic excitation energy and an intrinsic spin depending on the type of the reactions and interaction mechanism. Both the intrinsic excitation energies and the fragments’ intrinsic spins and parities are controlled by the interaction mechanism and conservations laws, which lead to their correlations and determines the character of their deexcitation mechanism. We outline here a framework for the theoretical extraction of the intrinsic spin distributions of the fragments and their correlations within the fully microscopic real-time density-functional theory formalism and illustrate it on the example of induced fission of 236 U and 240 Pu, using two nuclear energy density functionals. Here, these fission fragment intrinsic spin distributions display new qualitative features previously not discussed in literature. Within this fully microscopic framework, we extract for the first time the intrinsic spin distributions of fission fragments of 236 U and 240 Pu as well as the correlations of their intrinsic spins, which have been debated in literature for more than six decades with no definite conclusions so far.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Physico-chemical properties of lignin fractions from acid pretreated corn stover and their effects on enzymatic hydrolysis of microcrystalline cellulose

Lignin has been shown to be a recalcitrance factor in many biomass conversion studies. To better understand the effects of lignin on cellulose conversion, different lignin fractions were extracted from the same dilute acid pretreated corn stover by three sequential isolation methods, namely ethanol extraction, dioxane extraction, and enzyme purification. The physicochemical properties of each lignin fraction including molecular weight distribution, surface area, surface charge, and other structural features varied, depending on the isolation methods. All three lignin fractions had negative surface charges, and ethanol-extracted lignin carried the highest surface charges, followed by dioxane-extracted lignin and cellulase-purified residual lignin. These physicochemical properties of lignin fractions also resulted in different extent of inhibitory effects on enzymatic hydrolysis of microcrystalline cellulose (MCC). Dioxane-extracted lignin exhibited the highest inhibitory effect on glucose release from MCC, followed by the cellulase-purified residual lignin fraction and ethanol-extracted lignin. Furthermore, lignin fractions with higher contents of syringyl (S) substructure and β-O-4 aryl ether interunit linkages showed a stronger negative effect on cellulase hydrolysis of MCC.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2011

Superpixel-Augmented Endmember Detection for Hyperspectral Images

Superpixels are homogeneous image regions comprised of several contiguous pixels. They are produced by shattering the image into contiguous, homogeneous regions that each cover between 20 and 100 image pixels. The segmentation aims for a many-to-one mapping from superpixels to image features; each image feature could contain several superpixels, but each superpixel occupies no more than one image feature. This conservative segmentation is relatively easy to automate in a robust fashion. Superpixel processing is related to the more general idea of improving hyperspectral analysis through spatial constraints, which can recognize subtle features at or below the level of noise by exploiting the fact that their spectral signatures are found in neighboring pixels. Recent work has explored spatial constraints for endmember extraction, showing significant advantages over techniques that ignore pixels relative positions. Methods such as AMEE (automated morphological endmember extraction) express spatial influence using fixed isometric relationships a local square window or Euclidean distance in pixel coordinates. In other words, two pixels covariances are based on their spatial proximity, but are independent of their absolute location in the scene. These isometric spatial constraints are most appropriate when spectral variation is smooth and constant over the image. Superpixels are simple to implement, efficient to compute, and are empirically effective. They can be used as a preprocessing step with any desired endmember extraction technique. Superpixels also have a solid theoretical basis in the hyperspectral linear mixing model, making them a principled approach for improving endmember extraction. Unlike existing approaches, superpixels can accommodate non-isometric covariance between image pixels (characteristic of discrete image features separated by step discontinuities). These kinds of image features are common in natural scenes. Analysts can substitute superpixels for image pixels during endmember analysis that leverages the spatial contiguity of scene features to enhance subtle spectral features. Superpixels define populations of image pixels that are independent samples from each image feature, permitting robust estimation of spectral properties, and reducing measurement noise in proportion to the area of the superpixel. This permits improved endmember extraction, and enables automated search for novel and constituent minerals in very noisy, hyperspatial images. This innovation begins with a graph-based segmentation based on the work of Felzenszwalb et al., but then expands their approach to the hyperspectral image domain with a Euclidean distance metric. Then, the mean spectrum of each segment is computed, and the resulting data cloud is used as input into sequential maximum angle convex cone (SMACC) endmember extraction.

Thompson, David R.↗

DOE OSTI2022

Transverse Λ polarization in e + e – processes within a TMD factorization approach and the polarizing fragmentation function

We perform a re-analysis of Belle data for the transverse Λ and Λ¯ polarization in e + e – annihilation processes within a transverse momentum dependent (TMD) factorization approach. We consider two data sets, one referring to the associated production of Λ’s with a light unpolarized hadron in an almost back-to-back configuration, and one for the inclusive Λ production, with the reconstruction of the thrust axis. We adopt the Collins-Soper-Sterman framework and employ the recent formulation on the factorization of single-inclusive hadron production. This extends a previous phenomenological study carried out in a more simplified TMD approach, leading to a new extraction of the polarizing fragmentation function (FF). While confirming several features of the previous analysis, here we include the proper QCD scale dependence of this TMD FF and carefully exploit the role of its nonperturbative component. Here, the compatibility, within a unique TMD factorization scheme, of double and single-inclusive hadron production is discussed in detail. Moreover, we consider another data set for inclusive Λ production, at much larger energies, from the OPAL Collaboration, in order to test the consistency of the entire approach. Finally, we elaborate on some fundamental issues like the role of SU(2) isospin symmetry and the heavy quark contributions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2016

Generation of “gigantic” ultra-short microwave pulses based on passive mode-locking effect in electron oscillators with saturable absorber in the feedback loop

A periodic train of powerful ultrashort microwave pulses can be generated in electron oscillators with a non-linear saturable absorber installed in the feedback loop. This method of pulse formation resembles the passive mode-locking widely used in laser physics. Nevertheless, there is a specific feature in the mechanism of pulse amplification when consecutive energy extraction from different fractions of a stationary electron beam takes place due to pulse slippage over the beam caused by the difference between the wave group velocity and the electron axial velocity. As a result, the peak power of generated “gigantic” pulses can exceed not only the level of steady-state generation but also, in the optimal case, the power of the driving electron beam.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2019

Ultrafast photodissociation dynamics and nonadiabatic coupling between excited electronic states of methanol probed by time-resolved photoelectron spectroscopy

The electronic and nuclear dynamics in methanol, following 156 nm photoexcitation, are investigated by combining a detailed analysis of time-resolved photoelectron spectroscopy experiments with electronic structure calculations. The photoexcitation pump pulse is followed by a delayed 260 nm photoionization probe pulse to produce photoelectrons that are analyzed by velocity map imaging. The yields of mass-resolved ions, measured with similar experimental conditions, are found to exhibit the same time-dependence as specific photoelectron spectral features. Energy-resolved signal onset and decay times are extracted from the measured photoelectron spectra to achieve high temporal resolution, beyond the 20 fs pump and probe pulse durations. When combined with ab initio calculations of selected cuts through the excited state potential energy surfaces, this information allows the dynamics of the transient excited molecule, which exhibits multiple nuclear and electronic degrees of freedom, to be tracked on its intrinsic few-femtosecond time scale. Within 15 fs of photoexcitation, we observe nuclear motion on the initially bound photoexcited 2 1 A" (S 2 ) electronic state, through a conical intersection with the 1 1 A' (S3) state, which reveals paths to photodissociation following C–O stretch and C–O–H angle opening.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2019

Detecting baryon acoustic oscillations in dark matter from kinematic weak lensing surveys

Abstract We investigate the feasibility of extracting baryon acoustic oscillations (BAO) from cosmic shear tomography. We particularly focus on the BAO scale precision that can be achieved by future spectroscopy-based, kinematic weak lensing (KWL) surveys in comparison to the traditional photometry-based weak lensing surveys. We simulate cosmic shear tomography data of such surveys with a few simple assumptions to focus on the BAO information, extract the spatial power spectrum, and constrain the recovered BAO feature. Due to the small shape noise and the shape of the lensing kernel, we find that a Dark Energy Task Force Stage IV version of such KWL survey can detect the BAO feature in dark matter by 3σ and measure the BAO scale at the precision level of 4 per cent, while it will be difficult to detect the feature in photometry-based weak lensing surveys. With a more optimistic assumption, a KWL-Stage IV could achieve a ${\sim } 2{{\ \rm per\ cent}}$ BAO scale measurement with 4.9σ confidence. A built-in spectroscopic galaxy survey within such KWL survey will allow cross-correlation between galaxies and cosmic shear, which will tighten the constraint beyond the lower limit we present in this paper and therefore possibly allow a detection of the BAO scale bias between galaxies and dark matter.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Beam energy dependence of net- Λ fluctuations measured by the STAR experiment at the BNL Relativistic Heavy Ion Collider

The measurements of particle multiplicity distributions have generated considerable interest in understanding the fluctuations of conserved quantum numbers in the quantum chromodynamics (QCD) hadronization regime, in particular near a possible critical point and near the chemical freeze-out. Net-protons and net-kaons have been used as proxies for the net-baryon number and net-strangeness, respectively. We report the measurement of efficiency- and centrality-bin width-corrected cumulant ratios (C 2 /C 1 , C 3 /C 2 ) of net- Λ distributions, in the context of both strangeness and baryon number conservation, as a function of collision energy, centrality, and rapidity. The results are for Au + Au collisions at five beam energies ( √s NN = 19.6 , 27, 39, 62.4, and 200 GeV) recorded with the Solenoidal Tracker at RHIC (STAR). We compare our results to the Poisson and negative binomial (NBD) expectations, as well as to ultrarelativistic quantum molecular dynamics (UrQMD) and hadron resonance gas (HRG) model predictions. Both NBD and Poisson baselines agree with data within the statistical and systematic uncertainties. UrQMD describes the measured net- Λ C 1 and C 3 at 200 GeV reasonably well but deviates from C 2 , and the deviation increases as a function of collision energy. The ratios of the measured cumulants show no features of critical fluctuations. The chemical freeze-out temperatures extracted from a recent HRG calculation, which was successfully used to describe the net-proton, net-kaon, and net-charge data, indicate Λ freeze-out conditions similar to those of kaons. However, large deviations are found when comparing with temperatures obtained from net-proton fluctuations. The net- Λ cumulants show a weak but finite dependence on the rapidity coverage in the acceptance of the detector, which can be attributed to quantum number conservation.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2019

Linear analysis of fast-pairwise collective neutrino oscillations in core-collapse supernovae based on the results of Boltzmann simulations

Neutrinos are densely populated deep inside the core of massive stars after their gravitational collapse to produce supernova explosions and form compact stars such as neutron stars and black holes. It has been considered that they may change their flavor identities through so-called fast-pairwise conversions induced by mutual forward scatterings. If that is really the case, the dynamics of supernova explosion will be influenced, since the conversion may occur near the neutrino sphere, from which neutrinos are effectively emitted. In this paper, we conduct a pilot study of such possibilities based on the results of fully self-consistent, realistic simulations of a core-collapse supernova explosion in two spatial dimensions under axisymmetry. As we solved the Boltzmann equations for neutrino transfer in the simulation not as a postprocess but in real time, the angular distributions of neutrinos in momentum space for all points in the core at all times are available, a distinct feature of our simulations. We employ some of these distributions extracted at a few selected points and times from the numerical data and apply linear analysis to assess the possibility of the conversion. We focus on the vicinity of the neutrino sphere, where different species of neutrinos move in different directions and have different angular distributions as a result. This is a pilot study for a more thorough survey that will follow soon. Here, we find no positive sign of conversion unfortunately at least for the spatial points and times we studied in this particular model. We hence investigate rather in detail the condition for the conversion by modifying the neutrino distributions rather arbitrarily by hand.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

MO-FG-303-01: FEATURED PRESENTATION and BEST IN PHYSICS (THERAPY): Automating LINAC QA: Design and Testing of An Image Acquisition and Processing System Utilizing a Combination of Radioluminescent Phosphors, Embedded X-Ray Markers and Optical Measurements

Purpose: The recent development of phosphors to visualize radiation beams from linear accelerators (LINAC) offers a unique opportunity for evaluating radiation fields within the context of the treatment space. The purpose of this study was to establish an automated, self-calibrating prototype system for performing quality assurance (QA) measurements. Methods: A thin layer of Gd{sub 2}O{sub 2}S:Tb phosphor and fiducial markers were embedded on several planar faces of a custom-designed phantom. The phantom was arbitrarily placed near iso-center on the couch of a LINAC equipped with on-board megavoltage (MV) and kilovoltage (kV) imagers. A plan consisting of several beams and integrated image acquisitions was delivered. Images of the phantom were collected throughout the delivery. Salient features, such as fiducials, crosshairs and beam edges were then extracted from these images used to calibrate the system, adjust for variations in phantom placement, and perform measurements. Beam edges were visualized by imaging the light generated by the phosphor on the phantom enabling direct comparison with the light field and laser locations. Registration of MV, kV and optical image data was performed using the embedded fiducial markers, enabling comparison of imaging center locations. Measurements specified by TG-142 were calculated and compared with those obtained from a commercially available QA system. Results: The system was able to automatically extract the location of the fiducials, lasers, light field and radiation field from the acquired images regardless of phantom positioning. It was also able to automatically identify the locations of fiducial markers on kV and MV images. All collected measurements were within TG-142 guidelines. The difference between the prototype and commercially available system were less than 0.2 mm. Conclusion: The prototype system demonstrated the capability of accurately and autonomously evaluating various TG-142 parameters independent of operator input and phantom setup.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Acoustic Data Analytics For Predictive Technologies

The software utilizes frequency, amplitude, and phase features from sensor signals (either raw or processed) that are extracted using recursive frequency analysis, enabling (1) understanding of reactor operations under different operating conditions, (2) identifying of quiescent frequency ranges for sensor development, (3) system controls (4) predictive analytics, (5) structural health monitoring, and (6) loose part monitoring.

Smith, JamesA.↗

NASA NTRS1979

Machine processing of remotely sensed data; Proceedings of the Fifth Annual Symposium, Purdue University, West Lafayette, Ind., June 27-29, 1979

Papers are presented on techniques and applications for the machine processing of remotely sensed data. Specific topics include the Landsat-D mission and thematic mapper, data preprocessing to account for atmospheric and solar illumination effects, sampling in crop area estimation, the LACIE program, the assessment of revegetation on surface mine land using color infrared aerial photography, the identification of surface-disturbed features through a nonparametric analysis of Landsat MSS data, the extraction of soil data in vegetated areas, and the transfer of remote sensing computer technology to developing nations. Attention is also given to the classification of multispectral remote sensing data using context, the use of guided clustering techniques for Landsat data analysis in forest land cover mapping, crop classification using an interactive color display, and future trends in image processing software and hardware.

Tendam, I. M.↗

NASA NTRS1982

The lunar regolith - Chemistry, mineralogy, and petrology

The data base on the lunar regolith is surveyed to form a synthesis of the lunar regolith chemistry, mineralogy, and petrology. The data were derived from samples collected by the Apollo missions 11-17 and the Luna 16, 20, and 24 probes. The missions were sent to sample formations and areas which typified the common observed features of the lunar surface. Drive tubes were used to extract samples from beneath the surface in order to study the relationship between the regolith and the bedrock, as well as to identify the processes that formed the regolith, which is regarded as the prime source of raw materials for early lunar industrial activities. Regolith origins are now understood to be destructive processes of comminution and constructional processes of agglutinate formation. Mixing occurs on the local scale, although lateral transport is inefficient on the moon. The usual contents of the fraction of regolith less than 10 microns in diameter are Al2O3, CaO, Na2O, K2O, light REE, and Th.

Papike, J. J.↗