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At least 1,405 records · Page 78

The potential impact of new Andean dams on Amazon fluvial ecosystems

Increased energy demand has led to plans for building many new dams in the western Amazon, mostly in the Andean region. Historical data and mechanistic scenarios are used to examine potential impacts above and below six of the largest dams planned for the region, including reductions in downstream sediment and nutrient supplies, changes in downstream flood pulse, changes in upstream and downstream fish yields, reservoir siltation, greenhouse gas emissions and mercury contamination. Together, these six dams are predicted to reduce the supply of sediments, phosphorus and nitrogen from the Andean region by 69, 67 and 57% and to the entire Amazon basin by 64, 51 and 23%, respectively. These large reductions in sediment and nutrient supplies will have major impacts on channel geomorphology, floodplain fertility and aquatic productivity. These effects will be greatest near the dams and extend to the lowland floodplains. Attenuation of the downstream flood pulse is expected to alter the survival, phenology and growth of floodplain vegetation and reduce fish yields below the dams. Reservoir filling times due to siltation are predicted to vary from 106–6240 years, affecting the storage performance of some dams. Total CO2 equivalent carbon emission from 4 Andean dams was expected to average 10 Tg y-1 during the first 30 years of operation, resulting in a MegaWatt weighted Carbon Emission Factor of 0.139 tons C MWhr-1. Mercury contamination in fish and local human populations is expected to increase both above and below the dams creating significant health risks. Reservoir fish yields will compensate some downstream losses, but increased mercury contamination could offset these benefits.

54 ENVIRONMENTAL SCIENCES↗

The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases

Model organisms are essential experimental platforms for discovering gene functions, defining protein and genetic networks, uncovering functional consequences of human genome variation, and for modeling human disease. For decades, researchers who use model organisms have relied on Model Organism Databases (MODs) and the Gene Ontology Consortium (GOC) for expertly curated annotations, and for access to integrated genomic and biological information obtained from the scientific literature and public data archives. Through the development and enforcement of data and semantic standards, these genome resources provide rapid access to the collected knowledge of model organisms in human readable and computation-ready formats that would otherwise require countless hours for individual researchers to assemble on their own. Since their inception, the MODs for the predominant biomedical model organisms [Mus sp (laboratory mouse), Saccharomyces cerevisiae, Drosophila melanogaster, Caenorhabditis elegans, Danio rerio, and Rattus norvegicus] along with the GOC have operated as a network of independent, highly collaborative genome resources. In 2016, these six MODs and the GOC joined forces as the Alliance of Genome Resources (the Alliance). By implementing shared programmatic access methods and data-specific web pages with a unified "look and feel," the Alliance is tackling barriers that have limited the ability of researchers to easily compare common data types and annotations across model organisms. To adapt to the rapidly changing landscape for evaluating and funding core data resources, the Alliance is building a modern, extensible, and operationally efficient "knowledge commons" for model organisms using shared, modular infrastructure.

59 BASIC BIOLOGICAL SCIENCES↗

Mycorrhiza better predict soil fungal community composition and function than aboveground traits in temperate forest ecosystems

We sampled soil in the organic and mineral horizons beneath two AM-associated (Fraxinus americana, Thuja occidentalis) and two ECM-associated tree species (Betula alleghaniensis, and Tsuga canadensis), with an evergreen and deciduous species in each mycorrhizal group. To characterize fungal communities and organic matter decomposition beneath each tree species, we sequenced the ITS1 region of fungal DNA and measured the potential activity of carbon and nitrogen-targeting extracellular enzymes. Each tree species harbored distinct fungal communities, supporting the need to consider both mycorrhizal type and leaf habit. However, between tree characteristics, mycorrhizal type better predicted fungal communities. Across fungal guilds, saprotrophic fungi were the most important group in shaping fungal community differences in soils beneath all tree species. The effect of leaf habit on carbon and nitrogen-targeting hydrolytic enzymes depended on tree mycorrhizal association in the organic horizon, while oxidative enzyme activities were higher beneath EcM-associated trees across both soil horizons and leaf habits. These data include extracellular hydrolytic and oxidative enzyme activities, ITS sequencing fungal community data, soil carbon to nitrogen, and soil pH. Site level data include climate (mean annual temperature, precipitation), elevation, and soil series and order information.

54 ENVIRONMENTAL SCIENCES↗

SPRUCE Whole Ecosystem Warming (WEW) Environmental Data and Water Table Summaries, Marcell Experimental Forest, Minnesota, 2015-2024

This data set contains observations of photosynthetically active radiation (PAR), precipitation, soil temperature, soil volumetric water content, air temperature, relative humidity, and normalized water table depth that are summarized on a daily, weekly, monthly, and annual basis for each of the SPRUCE plots. Observations span 2015-2024. This dataset draws on several datasets (Hanson et al. 2016; Hanson et al. 2020; and Warren, unpublished data) and compiles these environmental observations into useful formats for data analysis. These environmental metrics can be used to understand the environmental conditions inside SPRUCE environmental chambers throughout the durations of the experiment and can be paired with other data for modeling and analysis. R code used to generate these files is provided as part of the data package. This dataset contains four data files in comma separate (.csv) format and a compressed folder (*.zip) containing three R (*.r) scripts. Additional metadata are provided: one data dictionary and a file-level metadata file in comma separate (.csv) format and a user guide in PDF (*.pdf) format. User note: Users must cite the original dataset/s along with this dataset when publishing any analyses using this dataset. Details on the dataset used to compile each variable are available in the header row of the files and in the user guide.

air temperature↗

Humic Substances Extracted by Alkali Are Invalid Proxies for the Dynamics and Functions of Organic Matter in Terrestrial and Aquatic Ecosystems

The conceptual rigor of using organic materials extracted from soil by alkali, called humic substances, as proxies for soil organic matter has been questioned for almost 180 years. However, the humic substances paradigm, i.e., the understanding that alkali-extracted humic substances are newly synthesized materials with unique properties that are distinct from non-humic organic matter, continues to be propagated throughout the literature. Here, we revisit the mechanistic background of the extraction process to show that alkaline extraction is unable to discriminate for the chemical history of a compound. For this reason, alkaline extraction cannot distinguish between (i) materials that have undergone secondary synthesis or humification (“humic” substances), and (ii) materials that are decorated with ionizable functional groups for other reasons, such as oxidative depolymerization (“non-humic” substances). While this mechanistic consideration alone renders invalid a distinction between humic substances and non-humic substances based on alkaline extraction, we further show that the evidence available to date does not support the assumption that processes of secondary synthesis create quantitatively significant proportions of “chemically reactive, yet recalcitrant” materials in natural environments. Any definition of humic substances that invokes both alkaline extraction and secondary synthesis is thus flawed on at least two accounts: (i) alkaline extraction is unable to achieve its purpose of separating humic from non-humic substances, and (ii) the assertion that the extracted materials have unique molecular properties as a consequence of secondary synthesis cannot be proven because alkaline extraction cannot separate materials created by secondary synthesis from other, ionizable organic compounds. Finally, we point out that since the definition of humic substances is tied to the alkaline-extraction procedure, neither the existence of operationally defined humic substances in the environment nor their chemical integrity during the course of alkaline extraction can be independently verified. We conclude that organic materials extracted by alkali require appropriate nomenclature and rigorous definition to merit consideration in teaching, research, and application.

54 ENVIRONMENTAL SCIENCES↗

Fire Impacts on the Mojave Desert Ecosystem: Literature Review

The Nevada National Security Site (NNSS) is located within the Mojave Desert, which is the driest region in North America. Precipitation on the NNSS varies from an annual average of 130 millimeters (mm; 5.1 inches) with a minimum of 47 mm (1.9 inches) and maximum of 328 mm (12.9 inches) over the past 15 year period to an annual average of 205 mm (8.1 inches) with an annual minimum of 89 mm (3.5 inches) and maximum of 391 mm (15.4 inches) for the same time period; for a Frenchman Flat location at 970 meters (m; 3182 feet) and a Pahute Mesa location at 1986 m (6516 feet), respectively. The combination of aridity and temperature extremes has resulted in sparsely vegetated basins (desert shrub plant communities) to moderately vegetated mountains (mixed coniferous forest plant communities); both plant density and precipitation increase with increasing elevation. Whereas some plant communities have evolved under fire regimes and are dependent upon fire for seed germination, plant communities within the Mojave Desert are not dependent on a fire regime and therefore are highly impacted by fire (Brown and Minnich, 1986; Brooks, 1999). As noted by Johansen (2003) natural range fires are not prevalent in the Mojave and Sonoran Deserts because there is not enough vegetation present (too many shrub interspaces) to sustain a fire. Fire research and hence publications addressing fires in the Southwestern United States (U.S.) have therefore focused on forest, shrub-steppe and grassland fires caused by both natural and anthropogenic ignition sources. In the last few decades, however, invasion of mid-elevation shrublands by non-native Bromus madritensis ssp. rubens and Bromus tectorum (Hunter, 1991) have been highly correlated with increased fire frequency (Brooks and Berry, 2006; Brooks and Matchett, 2006). Coupled with the impact of climate change, which has already been shown to be playing a role in increased forest fires (Westerling et al., 2006), it is likely that the fire frequency will further increase in the Mojave Desert (Knapp 1998; Smith et al., 1987; Smith et al., 2000).

(1.9↗

GAS-HYBRID SOURCE 14C-AMS: Application to terrestrial ecosystem, biological, and environmental research

Radiocarbon ( 14 C), a rare isotope of carbon (1:1012) which undergoes radioactive decay, is used to answer fundamental and applied questions of interest to DOE's Office of Science Biological and Environmental Research and Basic Energy Science research portfolio. Typically analyzed by accelerator mass spectrometry (AMS), radiocarbon measurements provides the ability to determine biogeochemical process rates and due to its unique tracer applicability to identify sources and pathways of carbon at the molecular to landscape scale.

54 ENVIRONMENTAL SCIENCES↗

A Collaborative Proposal: Simulating and Understanding Abrupt Climate-Ecosystem Changes During Holocene with NCAR-CCSM3

We have made significant progress in our proposed work in the last 4 years (3 years plus 1 year of no cost extension). In anticipation of the next phase of study, we have spent time on the abrupt changes since the last glacial maximum. First, we have performed further model-data comparison based on our baseline TRACE-21 simulation and made important progress towards the understanding of several major climate transitions. Second, we have made a significant effort in processing the model output of TRACE-21 and have put this output on a website for access by the community. Third, we have completed many additional sensitivity experiments. In addition, we have organized synthesis workshops to facilitate and promote transient model-data comparison for the international community. Finally, we have identified new areas of interest for Holocene climate changes.

54 ENVIRONMENTAL SCIENCES↗

Atmosphere, Climate and Ecosystem Sciences Team Summary

We engage in experimental and observational research and operations, with the goal of improving theory and models of climate change impacts and feedbacks for human and natural systems. We have a strong focus on understanding and quantifying carbon and water cycles, vegetation dynamics, aerosol-cloud interactions, and landscapes.

54 ENVIRONMENTAL SCIENCES↗

Genes, isotopes, and ecosystem biogeochemistry. Dissecting methane flux at the leading edge of global change

This project integrates across three fields (microbiology, biogeochemistry, and modeling) to understand the mechanisms of methane cycling in thawing permafrost. We have made substantial progress in each area, and in cross-cutting interdisciplinary synthesis. Large releases of CH 4 from thawing permafrost to the atmosphere, a strong positive feedback to global warming, are plausible but little is known about the controls on such release. Our project (“IsoGenie”) addresses the key question: What is the interplay of microbial communities and soil organic matter composition in the decomposition of organic C to CH 4 across a permafrost thaw gradient?

54 ENVIRONMENTAL SCIENCES↗

Holistic Interactions of Shallow Clouds, Aerosols, and Land-Ecosystems (HI-SCALE): National Geospatial-Intelligence Agency Calibration Target Placements Field Campaign Report

The purpose of our research has been to develop a capability of simulating image collection from any sensor so as to account for sensor configuration, ground spectral radiance, and atmospheric contributions. Atmosphere is arguably the most difficult aspect of the image pipeline to accurately characterize and integrate into an image simulation. Some of the reasons for this include the highly variable spatial content of different absorbing and scattering species in the atmosphere. Additionally, the interaction of land and atmosphere can significantly impact the total radiation budget, especially in the southern Great Plains.

54 ENVIRONMENTAL SCIENCES↗

Water-carbon Links in a Tropical Forest: How Interbasin Groundwater Flow Affects Carbon Fluxes and Ecosystem Carbon Budgets

This report covers the outcomes from a quantitative, interdisciplinary field investigation of how carbon fluxes and budgets in a lowland tropical rainforest are affected by the discharge of old regional groundwater into streams, springs, and wetlands in the forest. The work was carried out in a lowland rainforest of Costa Rica, at La Selva Biological Station. The research shows that discharge of regional groundwater high in dissolved carbon dioxide represents a significant input of carbon to the rainforest "from below", an input that is on average larger than the carbon input "from above" from the atmosphere. A stream receiving discharge of regional groundwater had greatly elevated emissions of carbon dioxide (but not methane) to the overlying air, and elevated downstream export of carbon from its watershed with stream flow. The emission of deep geological carbon dioxide from stream water elevates the carbon dioxide concentrations in air above the streams. Carbon-14 tracing revealed the presence of geological carbon in the leaves and stems of some riparian plants near streams that receive inputs of regional groundwater. Also, discharge of regional groundwater is responsible for input of dissolved organic matter with distinctive chemistry to rainforest streams and wetlands. The discharge of regional groundwater in lowland surface waters has a major impact on the carbon cycle in this and likely other tropical and non-tropical forests.

54 ENVIRONMENTAL SCIENCES↗

Terrestrial Ecosystem Science 2017 ECRP Annual Report: Tropical Forest Response to a Drier Future: Turnover Times of Soil Organic Matter, Roots, Respired CO 2 , and CH 4 Across Moisture Gradients in Time and Space

The overall goal of my Early Career research is to constrain belowground carbon turnover times for tropical forests across a broad range in moisture regimes. My group is using 14C analysis and modeling to address two major objectives: quantify age and belowground carbon turnover times across tropical forests spanning a moisture gradient from wetlands to dry forest; and identify specific areas for focused model improvement and data needs through site-specific model-data comparison and belowground carbon modeling for tropic forests.

58 GEOSCIENCES↗

The Transforming Mobility Ecosystem: Enabling in Energy-Efficient Future

Over the next decade, the transportation sector is poised for rapid change, propelled toward a new mobility future by strong technology currents and the confluence of prevailing megatrends. These major forces hold the promise of shaping a new mobility future – one that unlocks tremendous economic value, provides unprecedented gains in safety, offers affordable and equal accessibility, and enables the transition to energy-efficient transport of people and goods. They come, however, with cautionary viewpoints on energy consumption of the entire sector, necessitating the need to carefully guide the emergent future. This report examines four possible mobility futures that could exist in 2050 and the positive and negative impacts of these futures on energy consumption and the broader economy.

33 ADVANCED PROPULSION SYSTEMS↗