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At least 1,387 records · Page 77

ODI notebook additive_manufacturing_video_2022

Additive Manufacturing, video dataset Two-photon lithography (TPL) is a widely used 3D nanoprinting technique that uses laser light to create objects. Challenges to large-scale adoption of this additive manufacturing method include identifying light dosage parameters and monitoring during fabrication. A research team from LLNL, Iowa State University, and Georgia Tech is applying machine learning models to tackle these challenges-i.e., accelerate the process of identifying optimal light dosage parameters and automate the detection of part quality. Funded by LLNL's Laboratory Directed Research and Development Program, the project team has curated a video dataset of TPL processes for parameters such as light dosages, photo-curable resins, and structures. Both raw and labeled versions of the datasets are available on the links in the Open Data Initiative page. The code uses the labeled dataset. Notebook compiled by Nisha Mulakken (mulakken1@llnl.gov) for LLNL Open Data Initiative, Summer 2022. Original code provided by research team. Publications: X.Y. Lee, S.K. Saha, S. Sarkar, B. Giera. "Automated detection of part quality during two-photon lithography via deep learning." Additive Manufacturing 36, December 2020: doi.org/10.1016/j.addma.2020.101444 X.Y. Lee, S.K. Saha, S. Sarkar, B. Giera. "wo Photon lithography additive manufacturing: Video dataset of parameter sweep of light dosages, photo-curable resins, and structures." Data in Brief 32, October 2020. doi.org/10.1016/j.dib.2020.106119.

Mulakken, NishaJ↗

Smart Spectral Matching (SSM)

Smart Spectral Matching (SSM) catalogs spectroscopic data and, within the platform, investigates subtle attributes of spectral signatures from Raman and infrared spectroscopic data and enables statistical identification of connections between underlying structural units and spectroscopic information, particularly in fuel cycle materials that are amorphous or a mixture of several phases. Catalogs spectroscopic data, provides UIs for machine learning training either via JupyterHub for notebooks or domain scientist-specific views, machine learning and catalog REST API Python client libraries, and ability to identify features in files uploaded using pre-trained machine learning models. This is a "service-based" architecture with multiple applications represented by each repository in the group https://github.com/smart-spectral-matching

McDonnell, Marshall [Oak Ridge National Lab. (ORNL↗

IdahoLabResearch/INLIDD

This code along with the included data allows users to train machine learning models on network packet data.

Wadsworth, JaredC. (0000000191873672)↗

Data Science Infrastructure SOFTWARE

LANL science workflows generate complex data sets and ensembles of data requiring significant compute and storage resources. The Data Science Infrastructure (DSI) project focuses on data-driven approaches to make data more readily available to LANL projects. DSI workflows leverage metadata stored in data-agnostic databases, supported by an abstraction layer API to simplify searching and accessing data across simulation runs, experimental runs, filesystems and environments. The abstraction layer API allows the user to query a range of data types: raw output, processed data, configuration data, machine learning models, performance data, etc. In addition to the abstraction backend API, the DSI project is developing client-driven query APIs and UIs to support specific user workflows.

Turton, Terece↗

Genomad v1.0

Genomad aims to identify mobile genetic elements (namely, viruses and plasmids) from DNA sequence data. It uses a combination of marker gene identification and machine learning models to find likely virus/plasmid candidates in environmental DNA sequencing data. It has an improved classification performance over similar tools.

Camargo, Antonio↗

Vistransformers Explained

The Vistransformers Explained library is a collection of python notebooks that demonstrate the internal mechanics and uses of visual-transformer (ViT) machine learning models. The code implements, with mild modifications, ViT models that have been made publicly available through publication and GitHub code. The value added by this code is in-depth explanations of the mathematics behind the sub-modules of the ViT models, including original figures. Additionally, the library contains the code necessary to implement and train the ViT models. The library does not include example training data for the models; instead, it would rely on users generating their own datasets. The code is based on the PyTorch python library. It does not include any files other than python scripts, modules, or notebooks.

Callis, Skylar↗

Convolution Neural Network for Fault Identification in Distribution Feeder with High Penetration Solar PV

Identification and zonal classification of the faults is a decisive factor in the relay’s decision to trip or not. Different types of fault like three-phase, line-to-line-to-ground and single-line-to-ground can occur at various locations in the feeder. These faults are seen as the variation in the instantaneous values of three-phase voltages and currents, i.e., waveforms, that are measured at the relay location. The objective of this work is to develop a machine learning model that can identify a fault and classify it to various protection zones based on measured waveforms. In this work, a data-driven relay based on Convolutional Neural Network (CNN) is proposed for fault identification in distribution feeders with high penetration solar PV. The proposed CNN model takes local current and voltage waveforms as input and classify it into fault, no-fault or a capacitor switching. Further, the CNN also attempts to identify fault zones based on the images of waveforms. The overall testing accuracy of the trained model exceeds 95%.

Ramesh, Meghana↗

Dashboard for Visualizing Molecular Property Prediction Machine Learning Results

This is a dashboard for exploring the results of machine learning models for predicting molecular properties from molecular structure. It includes tools for: 1. Modifying molecules to observe the change in predicted properties 2. Exploring the relationship between molecular structure and predicted properties 3. Recommending structurally similar molecules with improved properties 4. Exploring the impact of data subsampling on model performance metrics

Xu, Audrey↗

pnnl/FlexyAirDeepMPC

This is a trained machine learning model written in Pytorch for automated control of the FlexyAir (https://ocl.sk/hardware/flexyair/) dynamical system control educational device. This software is to be released to support our demonstration of our deepMPC methods on embedded hardware to control a real (albeit tutorial) physical system with control actuators.

Tuor, Aaron↗

ErrFilter

ErrFilter is a tool that allows an analyst to explore data by defining simple Boolean filters on data. The tool also allows the user to sort the results by any attribute. The user sees both the distribution of filtered data as well as selected examples. The tool was designed to be applied generally to multivariate data associated with machine learning models.

Arendt, Dustin↗

Quasi-Newton Variational Bayes v.3.0

SAND2024-09052O Quasi-Newton Variational Bayes (QNVB) is a training algorithm that performs high-dimensional variational inference on machine learning models. It provides mechanisms to calibrate and control model uncertainty during training. The PyTorch implementation of projective integral updates for Gaussian mean-fields supports the manuscript, "Projective Integral Updates for High-Dimensional Variational Inference." Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Duersch, Jed↗

Machine Learning Based System for Automated Estimation of Crystal Unit Cell Parameters from X-ray Diffraction Powder Patterns (MLCell) v0.1

This software uses machine learning models to perform inference on X-ray diffraction powder patterns, output from a diffractometer, to estimate all 6 unit cell parameters of crystalline lattices. Novel aspects of this software originated from the incorporation of concepts from crystallography to an ML-based approach; The resulting method achieves new performance capabilities without significant loss of accuracy and with less computationally intensive models.

Oklejas, Vanessa↗

Code Description for "Brief Communication: Monitoring snow depth using small, cheap, and easy-to-deploy ground surface temperature sensors"

Temporally continuous snow depth estimates are vital for understanding changing snow patterns and impacts on permafrost in the Arctic. We train a random forest machine learning model to predict snow depth from variability in ground surface temperature. To our knowledge, this is the first time that small ground surface temperature sensors have been used to estimate snow depth. The model performs well at sites where the model was trained and at pan-arctic evaluation sites (RMSE <= 0.15 m). Small temperature sensors are cheap and easy-to-deploy, so this technique enables spatially distributed and temporally continuous snowpack monitoring to an extent previously infeasible. The model is flexible and can be applied to datasets retroactively to retrieve snow depth estimates at additional sites. This code package includes a *.joblib file of the trained random forest model and a *.ipynb file showing how to clean input data, train the random forest model, and apply the model.

Bachand, Claire↗

TransPlatformer

We propose TransPlatformer for translating toxicogenomics from one platform to another. Transcriptomic profiling has evolved through multiple generations of technology, from microarrays (e.g., Affymetrix, CodeLink) to more recent high-throughput sequencing and targeted panels such as S1500+. Microarrays, which dominated gene expression studies in the early 2000s, provided affordable and high-throughput transcript quantification but suffered from cross-hybridization issues and limited dynamic range . RNA-Seq, introduced in the late 2000s, revolutionized transcriptomics by enabling unbiased and comprehensive gene expression analysis, albeit at higher costs and computational demands . Despite advances, many studies rely on historical microarray data, necessitating the translation of legacy data into modern platforms to ensure continuity and comparability. This translation is complicated by factors such as platform-specific probe design, differences in transcript coverage, and batch effects . Existing methods for cross-platform mapping include statistical normalization, machine learning models, and biological anchoring approaches. The ability to translate transcriptomic data between platforms has broad implications, including enhanced meta-analyses, improved toxicological modeling, and better integration of historical datasets with contemporary research. TransPlatformer seeks to contribute to this effort by evaluating translation methodologies and proposing novel strategies to improve cross-platform gene expression harmonization. In this repository there are code examples for TransPlatformer implementation

Cong, Guojing↗

listenr

SAND2024-13902O listenr is an R package containing code that allows users to fit echo state networks (a machine learning model) on data to obtain predictions. The code also allows users to compute spatio-temporal feature importance on the echo state network, as described in “Characterizing Climate Pathways Using Feature Importance on Echo State Networks.” The package also provides a function for computing principal components.

Ries, Daniel↗