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At least 1,387 records · Page 77

Geochemical constraints on bacteriophage infectivity in terrestrial environments

Abstract Lytic phages can be potent and selective inhibitors of microbial growth and can have profound impacts on microbiome composition and function. However, there is uncertainty about the biogeochemical conditions under which phage predation modulates microbial ecosystem function, particularly in terrestrial systems. Ionic strength is critical for infection of bacteria by many phages, but quantitative data is limited on the ion thresholds for phage infection that can be compared with environmental ion concentrations. Similarly, while carbon composition varies in the environment, we do not know how this variability influences the impact of phage predation on microbiome function. Here, we measured the half-maximal effective concentrations (EC50) of 80 different inorganic ions for the infection of E. coli with two canonical dsDNA and ssRNA phages, T4 and MS2, respectively. Many alkaline earth metals and alkali metals enabled lytic infection but the ionic strength thresholds varied for different ions between phages. Additionally, using a freshwater nitrate-reducing microbiome, we found that the ability of lytic phages to influence nitrate reduction end-products depended upon the carbon source as well as ionic strength. For all phage:host pairs, the ion EC50s for phage infection exceeded the ion concentrations found in many terrestrial freshwater systems. Thus, our findings support a model where phages most influence terrestrial microbial functional ecology in hot spots and hot moments such as metazoan guts, drought influenced soils, or biofilms where ion concentration is locally or transiently elevated and nutrients are available to support the growth of specific phage hosts.

Carlson, Hans K. (ORCID:0000000215835313)↗

Consequences of wave-particle interactions on chaotic acceleration

The recent model of Ashour-Abdalla et al. (1991) has proposed that the earth's plasma sheet can be formed by chaotic acceleration in a magnetotail-like field configuration. The ion velocity distributions created by chaotic acceleration have unstable features and represent robust free energy sources for kinetic plasma waves that can modify the original distributions. In the plasma sheet boundary layer, field-aligned ion beamlets are formed which drive a host of instabilities creating a broadbanded noise spectrum and cause thermal spreading of the beamlets. In addition, there is strong heating of any cold background plasma that may be present. In the central plasma sheet, ion antiloss cone distributions are created which are unstable to very low frequency waves that saturate by filling the antiloss cone.

Schriver, David↗

Statistical Study of Auroral Kilometric Radiation Fine Structure Striations Observed by Polar

We have conducted a statistical survey of a semirandom sample of the auroral kilometric radiation (AKR) data observed by the plasma wave instrument wideband receiver on board the Polar spacecraft. We have determined that AKR fine structure patterns with very narrowband, negative drifting striations occur in approximately 6% of the high-resolution wideband spectrograms when AKR is present. Positive sloping striations are also observed, but at a much lower rate. More than 8200 AKR stripes have been scaled. The stripes are predominantly found in the 40 to 215-kHz frequency range and have a frequency extent of about 4 kHz and a duration of usually less than 2 s. The majority of the stripes have drift rates between -8 and -2 kHz/s, with a peak in the distribution between -6 and -4 kHz/s. There is also a much smaller group of striations with positive drift rates of up to about 5 or 6 kHz/s. We have further investigated the change of drift rate with frequency. Almost all striations are observed in the lowest two frequency bands of the wideband receiver (f < 215 kHz). There is an increase in the statistical drift rate with increasing frequency. The statistical slope of the striations increases with frequency from about -4.4 kHz/s at 75 kHz to about -5.7 kHz/s at 170 kHz. This frequency dependence of the drift rate is consistent, under certain conditions, with a production mechanism stimulated by an upward propagating electromagnetic ion cyclotron wave, as had been suggested earlier. However, such a changing drift rate is also compatible with a stimulated source region that propagates upward along the magnetic field line at the velocity of an ion beam accelerated by a local, upward directed electric field, as is typically observed in the auroral region. An explanation for this association is not apparent at this time.

Menietti, J. D.↗

DISTRIBUTION OF ION-EXCHANGEABLE RARE EARTH ELEMENTS AND CRITICAL MINERALS IN COAL-HOSTED CLAYS OF THE POWDER RIVER BASIN, WY

Increasing demand for a more robust domestic supply of rare earth elements (REE) and critical minerals (CM) has led to significant investigation into unconventional sources. Coal and coal byproducts from the Powder River Basin (PRB) of Wyoming are potential sources of REE but lack complete characterization of mineral hosts including ion-adsorption clays (IACs). IACs, which provide a substantial portion of the global REE supply, form when hydrated REE complexes are physiosorbed to negatively charged sites on clay surfaces. Typical IAC minerals include kaolinite, illite, and smectite. REE complexes are easily leached from IACs via ion exchange, making them economically attractive. However, research regarding the partitioning behaviors of strategic metals into PRB coal-hosted clays is limited. This project aims to quantify the modes of occurrence and distribution of REE and CM in clay minerals derived from PRB coals. Strategic metals investigated in this project have historic production or promising deposits within the PRB and/or high anticipated supply risk, and include: REE (lanthanides and Y), V, Ti, platinum group elements (PGE; Pt, Pd, Rh, Ru, Ir, Os), Al, Co, Ga, Zr, and W. Semi-quantitative compositional data from portable x-ray fluorescence spectroscopy (pXRF) on coal core from the PRB is consistent with the known correlation between REE and Al content, suggesting increased REE abundance will be found in clay-rich units. pXRF data also identifies elevated V, Ti, Co, and Zr correlated with Al. Preliminary x-ray diffraction (XRD) data indicates kaolinite, illite, and dickite are abundant minerals in overburden and clay-rich partings. Quantitative analysis via inductively coupled plasma mass spectrometry (ICP-MS) provides insights into REE and CM fractionation in coals as we compare trace metal occurrence to variations in mineralogy. Additionally, we apply scanning electron microscopy (SEM) and energy dispersive x-ray spectroscopy (EDS) data to correlate clay size and morphology to trace metal occurrence. Our findings supplement a broader effort to couple REE and CM extraction with existing domestic coal production and contribute to the fundamental understanding of adsorption processes that occur in low-temperature basin environments.

Stuart, Sophia↗

Thermomagnetic instability of plasma composition gradients

In this paper, we show that, under Braginskii magneto-hydrodynamics, anti-parallel gradients in an average ion charge state and electron temperature can be unstable to the growth of self-generated magnetic fields. The instability is analogous to the field-generating thermomagnetic instability, although it is driven by the collisional thermal force magnetic source term rather than the Biermann battery term. The gradient in ion charge state causes a gradient in collisionality, which couples with temperature perturbations to create a self-generated magnetic field. This magnetic field deflects the electron heat flux in a way that reinforces the temperature perturbation. The derived linearized growth rate, typically on hydrodynamic timescales, includes resistive and thermal smoothing. It increases with large ion composition gradients and electron heat flux, conditions typical of the hohlraum walls or contaminant mix jets in inertial confinement fusion implosions. However, extended magneto-hydrodynamic simulations indicate that the instability is usually dominated and stabilized by nonlinear Nernst advection, in a similar manner to the standard thermomagnetic instability.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Escape and ionization of atomic oxygen from Io

Model calculations of the neutral O cloud of Io, based on atom-electron-impact excitation and ionization processes in the plasma torus, are presented. The model is quantitatively anchored to the 6300-A O I emission intensity observations of Brown (1981), and uses a plasma temperature and density structure based on Voyager 1 and 2 and EUV data. Parameters predicted by the model include satellite emission flux = 1.5 x 10 to the 9th/sq cm sec, ion-loading rate = 6.2 x 10 to the 26th ions/sec, O mass-loading rate = 16.6 kg/sec, and O ion-energy input rate = 2.7 x 10 to the 10th W. The spatial morphologies of the parameters are shown. Rough estimates obtained by accounting for a neutral S cloud and plasma-torus charge-exchange reactions include O source flux = 1.2 x 10 to the 10th/sq cm sec, ion-loading rate = 4.0 x 10 to the 27th ions/sec, ion-diffusive-loss time = 200 days, plasma mass-loading rate = 150 kg/sec, satellite mass-loss rate = 270 kg/sec, and maximum ion-energy input = 4 x 10 to the 11th W.

Smyth, W. H.↗

Destruction of N/2D/ by O2 - A major source of 6300 A dayglow emission

The paper discusses the N(2D) + O2 yields NO + O(1D), for k1 reaction, and examines under different geophysical conditions, the effect of this source of 6300 A surface brightness on the dayglow redline. In calculating the 6300 A volume emission rate, a computer code is used which provides the thermal electron density, photoelectron flux, ion concentrations, electron and ion temperatures and odd nitrogen densities required to evaluate the O(1D) sources and sinks. It is found that under most conditions this source is the dominant mechanism responsible for the production of the 6300 A dayglow above 150 km. The volume emission rate of this source in summer is 2.5 times larger than the sum of all other sources at 180 km, and 1.5 times as large in winter. In addition, when the N(2D) source of O(1D) is taken into account, the rate coefficient for quenching of O(1D) by N2 is estimated to be 4 plus or minus 1 x 10 to the -11th cu cm per sec.

Torr, D. G.↗

Contributions of the low-latitude boundary layer to the finite width magnetotail convection model

Convection of plasma within the terrestrial nightside plasma sheet contributes to the structure and, possibly, the dynamical evolution of the magnetotail. In order to characterize the steady state convection process, we have extended the finite tail width model of magnetotail plasma sheet convection. The model assumes uniform plasma sources and accounts for both the duskward gradient/curvature drift and the earthward E x B drift of ions in a two-dimensional magnetic geometry. During periods of slow convection (i.e., when the cross-tail electric potential energy is small relative to the source plasma's thermal energy), there is a significant net duskward displacement of the pressure-bearing ions. The electrons are assumed to be cold, and we argue that this assumption is appropriate for plasma sheet parameters. We generalize solutions previously obtained along the midnight meridian to describe the variation of the plasma pressure and number density across the width of the tail. For a uniform deep-tail source of particles, the plasma pressure and number density are unrealistically low along the near-tail dawn flank. We therefore add a secondary source of plasma originating from the dawnside low-latitude boundary layer (LLBL). The dual plasma sources contribute to the plasma pressure and number density throughout the magnetic equatorial plane. Model results indicate that the LLBL may be a significant source of near-tail central plasma sheet plasma during periods of weak convection. The model predicts a cross-tail pressure gradient from dawn to dusk in the near magnetotail. We suggest that the plasma pressure gradient is balanced in part by an oppositely directed magnetic pressure gradient for which there is observational evidence. Finally, the pressure to number density ratio is used to define the plasma 'temperature.' We stress that such quantities as temperature and polytropic index must be interpreted with care as they lose their nominal physical significance in regions where the two-source plasmas intermix appreciably and the distributions become non-Maxwellian.

Spence, H. E.↗

Laboratory Anion Chemistry: Implications for the DIBs, and a Potential Formation Mechanism for a Known Interstellar Molecule

Due to recent interest in molecular anions as possible interstellar species, we have carried out several laboratory studies of anion chemistry. The reactions of the series C(sub n)(sup -); and C(sub n)H(sup -) with H and H2 were studied to address the viability of such species in the diffuse interstellar medium and to address their ability to be carriers of the diffuse interstellar bands (DIBs). These same molecules were also reacted with N and O to show possible heteroatomic products. C(sub m)N(sup - was a particularly stable product from the reaction of C(sub n)(sup -) + N. C3N(sup -) was further reacted with H to study chemistry that could produce HC3N, a known interstellar species. The reactions were done in a flowing afterglow selected ion flow tube apparatus (FA-SIFT). The anions were generated in an electron impact or cold cathode discharge source and the anion of interest was then selected by a quadrupole mass filter. The selected ion was then reacted with the atomic or molecular species in the flow tube and products were detected by another quadrupole. While the C(sub n)(sup -) species do not appear to be viable DIB carriers, their possible presence could provide a mechanism for the formation of known heteroatomic neutral molecules detected in the interstellar medium (ISM).

Eichelberger, B.↗

Measurement of photonuclear jet production in ultraperipheral Pb + Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV with the ATLAS detector

In ultrarelativistic heavy ion collisions at the LHC, each nucleus acts a sources of high-energy real photons that can scatter off the opposing nucleus in ultraperipheral photonuclear (𝛾 + 𝐴) collisions. Hard scattering processes initiated by the photons in such collisions provide a novel method for probing nuclear parton distributions in a kinematic region not easily accessible to other measurements. ATLAS has measured production of dijet and multijet final states in ultraperipheral Pb + Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV using a dataset recorded in 2018 with an integrated luminosity of 1.72 nb −1 . Photonuclear final states are selected by requiring a rapidity gap in the photon direction; this selects events where one of the outgoing nuclei remains intact. Jets are reconstructed using the anti-𝑘 t algorithm with radius parameter, 𝑅 = 0.4. Triple-differential cross sections, unfolded for detector response, are measured and presented using two sets of kinematic variables. The first set consists of the total transverse momentum (𝐻 T ), rapidity, and mass of the jet system. The second set uses 𝐻 T and particle-level nuclear and photon parton momentum fractions, 𝑥 A and 𝑧 𝛾 , respectively. The results are compared with leading-order perturbative QCD calculations of photonuclear jet production cross sections, where all leading order predictions using existing fits fall below the data in the shadowing region. More detailed theoretical comparisons will allow these results to strongly constrain nuclear parton distributions, and these data provide results from the LHC directly comparable to early physics results at the planned Electron-Ion Collider.

Parton distribution functions↗

Crosstalk Suppression in Individually Addressed Two-Qubit Gates in a Trapped-Ion Quantum Computer

Crosstalk between target and neighboring spectator qubits due to spillover of control signals represents a major error source limiting the fidelity of two-qubit entangling gates in quantum computers. We show that in our laser-driven trapped-ion system coherent crosstalk error can be modeled as residual $X\hat{σ}_{\phi}$ interaction and can be actively canceled by single-qubit echoing pulses. We propose and demonstrate a crosstalk suppression scheme that eliminates all first-order crosstalk utilizing only local control of target qubits, as opposed to an existing scheme which requires control over all neighboring qubits. We report a two-qubit Bell state fidelity of 99.52(6)% with the echoing pulses applied after collective gates and 99.37(5)% with the echoing pulses applied to each gate in a five-ion chain. Finally, this scheme is widely applicable to other platforms with analogous interaction Hamiltonians.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Evaluation of clad scintillating light pipes

Arrays of fibers made of scintillating material were used as position-sensitive detectors or hodoscopes for beam-finding at ion accelerators. Experiments were made with alpha's from an Am241 source incident upon one end of the fiber, the other end being viewed with a photomultiplier tube. The scintillation light was not detected in any of the fibers tested beyond about 5 cm. The effective useful lengths for detection of relativistic heavy ions were given.

Source record↗

Critical review of functionalized silica sorbent strategies for selective extraction of rare earth elements from acid mine drainage

We report the ubiquitous and growing global reliance on rare earth elements (REEs) for modern technology and the need for reliable domestic sources underscore the rising trend in REE-related research. Adsorption-based methods for REE recovery from liquid waste sources are well-positioned to compete with those of solvent extraction, both because of their expected lower negative environmental impact and simpler process operations. Functionalized silica represents a rising category of low cost and stable sorbents for heavy metal and REE recovery. These materials have collectively achieved high capacity and/or high selective removal of REEs from ideal solutions and synthetic or real coal wastewater and other leachate source. These sorbents are competitive with conventional materials, such as ion exchange resins, activated carbon; and novel polymeric materials like ion-imprinted particles and metal organic frameworks (MOFs). This critical review first presents a data mining analysis for rare earth element recovery publications indexed in Web of science, highlighting changes in REE recovery research foci and confirming the sharply growing interest in functionalized silica sorbents. A detailed examination of sorbent formulation and operation strategies to selectively separate heavy (HREE), middle (MREE), and light (LREE) REEs from the aqueous sources is presented. Selectivity values for sorbents were largely calculated from available figure data and gauged the success of the associated strategies, primarily: (1) silane-grafted ligands, (2) impregnated ligands, and (3) bottom-up ligand/silica hybrids. These were often accompanied by successful co-strategies, especially bite angle control, site saturation, and selective REE elution. Recognizing the need to remove competing fouling metals to achieve purified REE “baskets,” we highlight techniques for eliminating these species from acid mine drainage (AMD) and suggest a novel adsorption-based process for purified REE extraction that could be adapted to different water systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

New O+CO2 Scattering Cross Sections and Their Impact on Photochemical Atmospheric Escape of Oxygen from Mars

Dissociative recombination of O2+ and CO2+ molecular ions in the upper atmosphere of Mars is a major source of suprathermal (hot) oxygen atoms. A significant fraction of hot O atoms are sufficiently fast to overcome Mars' gravitational potential and escape to space. This mechanism is known as photochemical escape (PE) and found to be one of the major escape mechanisms presently active on Mars. The Mars Atmosphere and Volatile Evolution Mission (MAVEN) can constrain the PE rate from measurements of electron temperature and density and ion temperature and density. Escape probabilities of hot O can then be constructed from in-situ neutral densities and escaping O flux loss due to collisions with atmospheric background gases. Due to CO2 abundance in the upper atmosphere, O+CO2 scattering is the most important sink of the escaping hot O flux that strongly affects estimates of total atomic oxygen escape rate obtained from MAVEN data, as outlined above. New O+CO2 elastic and inelastic cross sections were constructed from first principles for collision energies from 0.01-5 eV. O(3P)+CO2 collisions were described using new 4D electronic potential energy surfaces (PESs) for restricted geometries. Three lowest triplet states of CO2 were considered for symmetric, bending, and asymmetric vibrational modes. The cross sections were determined from close-coupling calculations performed on individual surfaces using vibrating rotor approximations for CO2 molecule. Differential and momentum transfer cross sections, of use in energy transfer atmospheric models, were also constructed. The obtained cross sections are in excellent agreement with published results. Our new elastic cross sections are significantly smaller than assumed in earlier atmospheric escape models, resulting in larger photochemical escape rate of O from Mars, as estimated from a 1D escape model. Our results agree well with estimated hot O flux (about 9 x 10(sup 25) s(sup -1)) derived from altitude profiles of 130.4 nm O emission measured up to ~4,000 km by the Imaging Ultraviolet Spectrograph on MAVEN orbiter.

Atmospheric↗

The Retarding Ion Mass Spectrometer on Dynamics Explorer-A

The thermal component of the magnetospheric plasma plays a key role in magnetosphere-ionosphere coupling processes, acting as a strong influence on ionospheric structure at low altitudes and as a source and modifier of the hotter plasma population at high altitudes. The Retarding Ion Mass Spectrometer (RIMS) instrument on Dynamics Explorer-A is designed to measure this important thermal plasma component. Using a combination of retarding potential analysis and magnetic ion mass spectrometer techniques, the RIMS instrument will measure the bulk plasma parameters of ion density (0.1 to 1,000,000 ions/cu cm), temperature (0-45 eV), and bulk flow (greater than 0.5 km/sec) in the inner plasmasphere and ionosphere, and the specific ion pitch angle and energy spectral characteristics in the outer plasmasphere and plasma trough for a mass range of 1-32 amu. The energy and mass spectral step sequences, as well as the multiplexing of the resultant data, can be tailored to accomplish a variety of thermal ion measurements throughout the inner magnetosphere.

Chappell, C. R.↗

Interfacial Dark Aging Is an Overlooked Source of Aqueous Secondary Organic Aerosol

In this work, the relative yields of aqueous secondary organic aerosols (aqSOAs) at the air–liquid (a–l) interface are investigated between photochemical and dark aging using in situ time-of-flight secondary ion mass spectrometry (ToF-SIMS). Our results show that dark aging is an important source of aqSOAs despite a lack of photochemical drivers. Photochemical reactions of glyoxal and hydroxyl radicals (•OH) produce oligomers and cluster ions at the aqueous surface. Interestingly, different oligomers and cluster ions form intensely in the dark at the a–l interface, contrary to the notion that oligomer formation mainly depends on light irradiation. Furthermore, cluster ions form readily during dark aging and have a higher water molecule adsorption ability. This finding is supported by the observation of more frequent organic water cluster ion formation. The relative yields of water clusters in the form of protonated and hydroxide ions are presented using van Krevelen diagrams to explore the underlying formation mechanisms of aqSOAs. Large protonated and hydroxide water clusters (e.g., (H2O)nH+, 17 < n ≤ 44) have reasonable yields during UV aging. In contrast, small protonated and hydroxide water clusters (e.g., (H2O)nH+, 1 ≤ n ≤ 17) form after several hours of dark aging. Moreover, cluster ions have higher yields in dark aging, indicating the overlooked influence of dark aging interfacial products on aerosol optical properties. Molecular dynamic simulation shows that cluster ions form stably in UV and dark aging. AqSOAs molecules produced from dark and photochemical aging can enhance UV absorption of the aqueous surface, promote cloud condensation nuclei (CCN) activities, and affect radiative forcing.

Van Krevelen diagram↗

Simulating Sources of Superstorm Plasmas

We evaluated the contributions to magnetospheric pressure (ring current) of the solar wind, polar wind, auroral wind, and plasmaspheric wind, with the surprising result that the main phase pressure is dominated by plasmaspheric protons. We used global simulation fields from the LFM single fluid ideal MHD model. We embedded the Comprehensive Ring Current Model within it, driven by the LFM transpolar potential, and supplied with plasmas at its boundary including solar wind protons, polar wind protons, auroral wind O+, and plasmaspheric protons. We included auroral outflows and acceleration driven by the LFM ionospheric boundary condition, including parallel ion acceleration driven by upward currents. Our plasmasphere model runs within the CRCM and is driven by it. Ionospheric sources were treated using our Global Ion Kinetics code based on full equations of motion. This treatment neglects inertial loading and pressure exerted by the ionospheric plasmas, and will be superceded by multifluid simulations that include those effects. However, these simulations provide new insights into the respective role of ionospheric sources in storm-time magnetospheric dynamics.

Fok, Mei-Ching↗

Recent developments and operation of polarized photocathodes at Jefferson Lab

Spin-polarized electron sources are critical to a wide range of accelerator-based applications for nuclear and particle physics. At Thomas Jefferson National Accelerator Facility, they play a central role in delivering high-quality polarized beams for precision nuclear physics experiments and next-generation parity-violation measurements, where stringent control of systematic uncertainties is essential. These sources are also expected to be key components of other initiatives, including the Electron-Ion Collider and the potential future positron capabilities at Jefferson Lab. In this talk, I will present ongoing research and development efforts at Jefferson Lab focused on the design, fabrication and optimization of spin-polarized photocathodes. This includes growth using molecular beam epitaxy (MBE) or metal-organic chemical vapor deposition (MOCVD), along with detailed characterization of their performance metrics, such as quantum efficiency (QE), electron spin polarization and QE anisotropy, all of which are increasingly important metrics for polarized electron sources at Jefferson Lab and the Electron-Ion Collider. Strategies to mitigate QE anisotropy, which is critical for reducing helicity-correlated beam asymmetries in precision experiments such as MOLLER will be highlighted. Finally, I will present recent efforts aimed at improving the operational lifetime of spin-polarized photocathodes in injector environments, particularly under high-voltage conditions in DC electron guns. These developments are essential for enabling reliable, high-performance operation of polarized sources for current and future accelerator programs.

Kachwala, Alimohammed [Thomas Jefferson National A↗