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At least 1,387 records · Page 77

Far-infrared line spectra of active galaxies from the Herschel/PACS spectrometer: The complete database

We present a coherent database of spectroscopic observations of far-IR fine-structure lines from the Herschel/Photoconductor Array Camera and Spectrometer archive for a sample of 170 local active galactic nuclei (AGNs), plus a comparison sample of 20 starburst galaxies and 43 dwarf galaxies. Published Spitzer/IRS and Herschel/SPIRE line fluxes are included to extend our database to the full 10–600 μm spectral range. The observations are compared to a set of Cloudy photoionization models to estimate the above physical quantities through different diagnostic diagrams. We confirm the presence of a stratification of gas density in the emission regions of the galaxies, which increases with the ionization potential of the emission lines. The new [O iv]{sub 25.9μm}/[O iii]{sub 88μm} versus [Ne iii]{sub 15.6μm}/[Ne ii]{sub 12.8μm} diagram is proposed as the best diagnostic to separate (1) AGN activity from any kind of star formation and (2) low-metallicity dwarf galaxies from starburst galaxies. Current stellar atmosphere models fail to reproduce the observed [O iv]{sub 25.9μm}/[O iii]{sub 88μm} ratios, which are much higher when compared to the predicted values. Finally, the ([Ne iii]{sub 15.6μm} + [Ne ii]{sub 12.8μm})/([S iv]{sub 10.5μm} +[S iii]{sub 18.7μm}) ratio is proposed as a promising metallicity tracer to be used in obscured objects, where optical lines fail to accurately measure the metallicity. The diagnostic power of mid- to far-infrared spectroscopy shown here for local galaxies will be of crucial importance to study galaxy evolution during the dust-obscured phase at the peak of the star formation and black hole accretion activity (1<z<4). This study will be addressed by future deep spectroscopic surveys with present and forthcoming facilities such as the James Webb Space Telescope, the Atacama Large Millimeter/submillimeter Array, and the Space Infrared telescope for Cosmology and Astrophysics.

79 ASTRONOMY AND ASTROPHYSICS↗

The HOSTS Survey for Exozodiacal Dust: Observational Results from the Complete Survey

The Large Binocular Telescope Interferometer (LBTI) enables nulling interferometric observations across the N band (8 to 13 μm) to suppress a star’s bright light and probe for faint circumstellar emission. We present and statistically analyze the results from the LBTI/Hunt for Observable Signatures of Terrestrial Systems survey for exozodiacal dust. By comparing our measurements to model predictions based on the solar zodiacal dust in the N band, we estimate a 1σ median sensitivity of 23 zodis times the solar system dust surface density in its habitable zone (HZ; 23 zodis) for early-type stars and 48 zodis for Sun-like stars, where 1 zodi is the surface density of HZ dust in the solar system. Of the 38 stars observed, 10 show significant excess. A clear correlation of our detections with the presence of cold dust in the systems was found, but none with the stellar spectral type or age. The majority of Sun-like stars have relatively low HZ dust levels (best-fit median: 3 zodis, 1σ upper limit: 9 zodis, 95% confidence: 27 zodis based on our N band measurements), while ~20% are significantly more dusty. The solar system’s HZ dust content is consistent with being typical. Our median HZ dust level would not be a major limitation to the direct imaging search for Earth-like exoplanets, but more precise constraints are still required, in particular to evaluate the impact of exozodiacal dust for the spectroscopic characterization of imaged exo-Earth candidates.

79 ASTRONOMY AND ASTROPHYSICS↗

Toward Complete Characterization: Prospects for Directly Imaging Transiting Exoplanets

High-contrast direct imaging of exoplanets can provide many important observables, including measurements of the orbit, spectra that probe the lower layers of the atmosphere, and phase variations of the planet, but cannot directly measure planet radius or mass. Our future understanding of directly imaged exoplanets will therefore rely on extrapolated models of planetary atmospheres and bulk composition, which need robust calibration. We estimate the population of extrasolar planets that could serve as calibrators for these models. Critically, this population of “standard planets” must be accessible to both direct imaging and the transit method, allowing for radius measurement. We show that the search volume of a direct imaging mission eventually overcomes the transit probability falloff with semimajor axis, so that as long as cold planets are not exceedingly rare, the population of transiting planets and directly imageable planets overlaps. Using current extrapolations of Kepler occurrence rates, we estimate that ∼8 standard planets could be characterized shortward of 800 nm with an ambitious future direct imaging mission like LUVOIR-A and several dozen could be detected at the V band. We show the design space that would expand the sample size and discuss the extent to which ground- and space-based surveys could detect this small but crucial population of planets.

79 ASTRONOMY AND ASTROPHYSICS↗

The Complete Light-curve Sample of Spectroscopically Confirmed SNe Ia from Pan-STARRS1 and Cosmological Constraints from the Combined Pantheon Sample

Here, we present optical light curves, redshifts, and classifications for 365 spectroscopically confirmed Type Ia supernovae (SNe Ia) discovered by the Pan-STARRS1 (PS1) Medium Deep Survey. We detail improvements to the PS1 SN photometry, astrometry, and calibration that reduce the systematic uncertainties in the PS1 SN Ia distances. We combine the subset of 279 PS1 SNe Ia (0.03 < z < 0.68) with useful distance estimates of SNe Ia from the Sloan Digital Sky Survey (SDSS), SNLS, and various low-z and Hubble Space Telescope samples to form the largest combined sample of SNe Ia, consisting of a total of 1048 SNe Ia in the range of 0.01 < z < 2.3, which we call the Pantheon Sample. When combining Planck 2015 cosmic microwave background (CMB) measurements with the Pantheon SN sample, we find Ω m = 0.307 ± 0.012 and w = -1.026 ± 0.041 for the wCDM model. When the SN and CMB constraints are combined with constraints from BAO and local H 0 measurements, the analysis yields the most precise measurement of dark energy to date: w 0 = -1.007 ± 0.089 and w α = -0.222 ± 0.407 for the w 0 w α CDM model. Tension with a cosmological constant previously seen in an analysis of PS1 and low-z SNe has diminished after an increase of 2× in the statistics of the PS1 sample, improved calibration and photometry, and stricter light-curve quality cuts. We find that the systematic uncertainties in our measurements of dark energy are almost as large as the statistical uncertainties, primarily due to limitations of modeling the low-redshift sample. This must be addressed for future progress in using SNe Ia to measure dark energy.

79 ASTRONOMY AND ASTROPHYSICS↗

All-sky Faint DA White Dwarf Spectrophotometric Standards for Astrophysical Observatories: The Complete Sample

Hot DA white dwarfs (DAWDs) have fully radiative pure hydrogen atmospheres that are the least complicated to model. Pulsationally stable, they are fully characterized by their effective temperature T eff and surface gravity log g, which can be deduced from their optical spectra and used in model atmospheres to predict their spectral energy distributions (SEDs). Based on this, three bright DAWDs have defined the spectrophotometric flux scale of the CALSPEC system of the Hubble Space Telescope (HST). In this paper we add 32 new fainter (16.5 < V < 19.5) DAWDs spread over the whole sky and within the dynamic range of large telescopes. Using ground-based spectra and panchromatic photometry with HST/WFC3, a new hierarchical analysis process demonstrates consistency between model and observed fluxes above the terrestrial atmosphere to <0.004 mag rms from 2700 to 7750 Å and to 0.008 mag rms at 1.6 μm for the total set of 35 DAWDs. These DAWDs are thus established as spectrophotometric standards with unprecedented accuracy from the near-ultraviolet to the near infrared, suitable for both ground- and space-based observatories. They are embedded in existing surveys like the Sloan Digital Sky Survey, Pan-STARRS, and Gaia, and will be naturally included in the Large Synoptic Survey Telescope survey by the Rubin Observatory. With additional data and analysis to extend the validity of their SEDs further into the infrared, these spectrophotometric standard stars could be used for JWST, as well as for the Roman and Euclid observatories.

79 ASTRONOMY AND ASTROPHYSICS↗

The Completed Sloan Digital Sky Survey IV Extended Baryon Oscillation Spectroscopic Survey: The Damped Lyα Systems Catalog

We present the characteristics of the damped Lyα (DLA) systems found in data release DR16 of the extended Baryon Oscillation Spectroscopic Survey of the Sloan Digital Sky Survey. The DLAs were identified using the convolutional neural network of Parks et al. (2018). A total of 117,458 absorber candidates were found with 2 ≤ $z_{DLA}$ ≤ 5.5 and 19.7 ≤ log(N(H I )/cm -2 ) ≤ 22, including 57,136 DLA candidates with log(N(H I )/cm -2 ) ≥ 20.3. Mock quasar spectra were used to estimate the DLA detection efficiency and the purity of the resulting catalog. Restricting the quasar sample to bright forests, i.e., those with mean forest fluxes $\bar{f_{λ}}$ > 2 × 10 -19 W m -2 nm -1 , the efficiency and purity are greater than 90% for DLAs with column densities in the range 20.1 ≤ log(N(H I )/cm -2 ) ≤ 22.

79 ASTRONOMY AND ASTROPHYSICS↗

Probing the Diffuse Ly α Emission on Cosmological Scales: Ly α Emission Intensity Mapping Using the Complete SDSS-IV eBOSS

Based on Sloan Digital Sky Survey Data Release 16, we have detected the large-scale structure of Lyα emission in the universe at redshifts z = 2–3.5 by cross-correlating quasar positions and Lyα emission imprinted in the residual spectra of luminous red galaxies. We apply an analytical model to fit the corresponding Lyα surface brightness profile and multipoles of the redshift-space quasar–Lyα emission cross-correlation function. The model suggests an average cosmic Lyα luminosity density of $6.6^{+3.3}_{-3.1}$ x 10 40 erg s -1 cMpc -3 , a ~2σ detection with a median value about 8–9 times those estimated from deep narrowband surveys of Lyα emitters at similar redshifts. Although the low signal-to-noise ratio prevents us from a significant detection of the Lyα forest–Lyα emission cross-correlation, the measurement is consistent with the prediction of our best-fit model from quasar–Lyα emission cross-correlation within current uncertainties. We rule out the scenario where the Lyα photons mainly originate from quasars. We find that Lyα emission from star-forming galaxies, including contributions from that concentrated around the galaxy centers and that in diffuse Lyα-emitting halos, is able to explain the bulk of the Lyα luminosity density inferred from our measurements. Ongoing and future surveys can further improve the measurements and advance our understanding of the cosmic Lyα emission field.

79 ASTRONOMY AND ASTROPHYSICS↗

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006.

59 BASIC BIOLOGICAL SCIENCES↗

Complete genome sequence of Halorhodospira halophila SL1

Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here we report the determination of its entire genome in a single contig. This is the first genome of a phototrophic extreme halophile. The genome consists of 2,678,452 bp, encoding 2493 predicted genes as determined by automated genome annotation. Of the 2407 predicted proteins, 1905 were assigned to a putative function. Future detailed analysis of this genome promises to yield insights into the halophilic adaptations of this organism, its ability for photoautotrophic growth under extreme conditions, and its characteristic sulfur metabolism.

phile↗

Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil

Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1 of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mallensis is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates. These include gene modules encoding the carbohydrate-active enzyme (CAZyme) family involved in breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides including plant based carbon polymers. The genome of Granulicella mallensis MP5ACTX8(T) consists of a single replicon of 6,237,577 base pairs (bp) with 4,907 protein-coding genes and 53 RNA

Acidobacteria↗

Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271T)

Mesorhizobium ciceri bv. biserrulae strain WSM1271T was isolated from root nodules of the pasture legume Biserrula pelecinus growing in the Mediterranean basin. Previous studies have shown this aerobic, motile, Gram negative, non-spore-forming rod preferably nodulates B. pelecinus a legume with many beneficial agronomic attributes for sustainable agriculture in Australia. We describe the genome of Mesorhizobium ciceri bv. biserrulae strain WSM1271T consisting of a 6,264,489 bp chro-mosome and a 425,539 bp plasmid that together encode 6,470 protein-coding genes and 61 RNA-only encoding genes.

Alphaproteobacteria↗

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)

Mesorhizobium australicum strain WSM2073T was isolated from root nodules on the pasture legume Biserrula pelecinus growing in Australia in 2000. This aerobic, motile, gram negative, nonspore-forming rod is poorly effective in N2 fixation on B. pelecinus and has gained the ability to nodulate B. pelecinus following in situ lateral transfer of a symbiosis island from the original inoculant strain for this legume, Mesorhizobium ciceri bv. biserrulae WSM1271. We describe that the genome size of M. australicum strain WSM2073T is 6,200,534 bp encoding 6,013 proteincoding genes and 67 RNA-only encoding genes. This genome does not contain any plasmids but has a 455.7 kb genomic island from Mesorhizobium ciceri bv. biserrulae WSM1271 that has been integrated into a phenylalanine-tRNA gene.

59 BASIC BIOLOGICAL SCIENCES↗

Complete genome sequence of Granulicella tundricola type strain MP5ACTX9T, an Acidobacteria from tundra soil

Granulicella tundricola strain MP5ACTX9T is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-adapted acidophile and a versatile heterotroph that hydro-lyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates, including gene modules encoding for the carbohydrate-active enzyme (CAZy) families for the break-down, utilization and biosynthesis of diverse structural and storage polysaccharides such as plant based carbon polymers. The genome of G. tundricola strain MP5ACTX9T consists of 4,309,151 bp of a circular chromosome and five mega plasmids with a total genome con-tent of 5,503,984 bp. The genome comprises 4,705 protein-coding genes and 52 RNA genes.

Acidobacteria↗

Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

Burkholderia phymatum is a soil bacterium able to develop a nitrogen-fixing symbiosis with species of the legume genus Mimosa, and is frequently found associated specifically with Mimosa pudica. The type strain of the species, STM 815T , was isolated from a root nodule in French Guiana in 2000. The strain is an aerobic, motile, non-spore forming, Gram-negative rod, and is a highly competitive strain for nodulation compared to other Mimosa symbionts, as it also nodulates a broad range of other legume genera and species. The 8,676,562 bp genome is composed of two chromosomes (3,479,187 and 2,697,374 bp), a megaplasmid (1,904,893 bp) and a plasmid hosting the symbiotic functions (595,108 bp).

59 BASIC BIOLOGICAL SCIENCES↗