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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,387 records · Page 77
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Structure of human Frizzled5 by fiducial-assisted cryo-EM supports a heterodimeric mechanism of canonical Wnt signaling

Frizzleds (Fzd) are the primary receptors for Wnt morphogens, which are essential regulators of stem cell biology, yet the structural basis of Wnt signaling through Fzd remains poorly understood. Here we report the structure of an unliganded human Fzd5 determined by single-particle cryo-EM at 3.7 Å resolution, with the aid of an antibody chaperone acting as a fiducial marker. We also analyzed the topology of low-resolution XWnt8/Fzd5 complex particles, which revealed extreme flexibility between the Wnt/Fzd-CRD and the Fzd-TM regions. Analysis of Wnt/β-catenin signaling in response to Wnt3a versus a ‘surrogate agonist’ that cross-links Fzd to LRP6, revealed identical structure-activity relationships. Thus, canonical Wnt/β-catenin signaling appears to be principally reliant on ligand-induced Fzd/LRP6 heterodimerization, versus the allosteric mechanisms seen in structurally analogous class A G protein-coupled receptors, and Smoothened. These findings deepen our mechanistic understanding of Wnt signal transduction, and have implications for harnessing Wnt agonism in regenerative medicine.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

A Garnet-Type Solid-Electrolyte-Based Molten Lithium–Molybdenum–Iron(II) Chloride Battery with Advanced Reaction Mechanism

Solid-electrolyte-based molten-metal batteries have attracted considerable attention for grid-scale energy storage. Although ZEBRA batteries are considered one of the promising candidates, they still have the potential concern of metal particle growth and ion exchange with the β”-Al 2 O 3 electrolyte. Herein, a Li 6.4 La 3 Zr 1.4 Ta 0.6 O 12 solid-electrolyte-based molten lithium–molybdenum–iron(II) chloride battery (denoted as Li–Mo–FeCl 2 ) operated at temperature of 250 °C, comprising a mixture of Fe and LiCl cathode materials, a Li anode, a garnet-type Li-ion ceramic electrolyte, and Mo additive, is designed to overcome these obstacles. Different from conventional battery reaction mechanisms, this battery revolutionarily synchronizes the reversible Fe–Mo alloying–dealloying reactions with the delithiation–lithiation processes, meaning that the porous Mo framework derived from Fe–Mo alloy simultaneously suppresses the growth of pure Fe particles. By adopting a Li anode and a Li-ion ceramic electrolyte, the corrosion problem between the cathode and the solid electrolyte is overcome. With similar battery cost ($12 kWh –1 ), the theoretical energy density of Li–Mo–FeCl 2 battery surpasses that of a Na–FeCl 2 ZEBRA battery over 25%, to 576 Wh kg –1 and 2216 Wh L –1 , respectively. Experimental results further prove this cell has excellent cycling performance (472 mAh g LiCl –1 after 300 cycles, 50 mg active material) and strong tolerance against the overcharge–overdischarge (3–1.6 V) and freezing–thawing (25–250 °C) incidents.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Diurnal Trends and Meteorological Factors Influencing the Variability of Fluorescent Bioaerosol in Mt. Crested Butte, Colorado During SAIL

Abstract Despite the crucial role of bioaerosol particles (BAP) in our climate system, local ecosystems, and human health, our grasp on their atmospheric interactions is hampered by a lack of high‐resolution and long‐term data, which is essential for understanding their abundance and variability in response to meteorological conditions. To discern these relationships in a high‐altitude mountainous terrain is even less well‐studied. Therefore, we deployed a Wideband Integrated Bioaerosol Sensor (WIBS‐Neo) for three months during the first biologically active season of the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign in summer 2022 on Mt. Crested Butte in Colorado (elevation 3,140 m ASL). Here, we report real‐time fluorescent BAP (FBAP) data collected from 15 June to 13 September 2022, sampled from within the ARM Aerosol Observing System (AOS). To our knowledge, these are the first high altitude (>3,000 m ASL) continuous measurements of FBAP made in North America. During this deployment, we observed on average 21% and as many as 48% (hourly maximum) of particles within the detection size range ( to ) of the WIBS as FBAP. Our analysis presents the diurnal cycles for seven distinct types of FBAP, showing unique patterns and, in some cases, correlations with temperature and solar radiation cycles. Abundance and composition of FBAP varied with relative humidity and precipitation. Precipitation events appeared to both cause emission and removal of FBAP, whereas dust and smoke events had no significant effect, highlighting the critical role of meteorology on FBAP at high altitudes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Towards predictive control of reversible nanoparticle assembly with solid-binding proteins

Although a broad range of ligand-functionalized nanoparticles and physico-chemical triggers have been exploited to create stimuli-responsive colloidal systems, little attention has been paid to the reversible assembly of unmodified nanoparticles with non-covalently bound proteins. Previously, we reported that a derivative of green fluorescent protein engineered with oppositely located silica-binding peptides mediates the repeated assembly and disassembly of 10-nm silica nanoparticles when pH is toggled between 7.5 and 8.5. We captured the subtle interplay between interparticle electrostatic repulsion and their protein-mediated short-range attraction with a multiscale model energetically benchmarked to collective system behavior captured by scattering experiments. Here, in this work, we show that both solution conditions (pH and ionic strength) and protein engineering (sequence and position of engineered silica-binding peptides) provide pathways for reversible control over growth and fragmentation, leading to clusters ranging in size from 25 nm protein-coated particles to micrometer-size aggregate. We further find that the higher electrolyte environment associated with successive cycles of base addition eventually eliminates reversibility. Our model accurately predicts these multiple length scales phenomena. The underpinning concepts provide design principles for the dynamic control of other protein- and particle-based nanocomposites.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Active conditioning of ASDEX Upgrade tungsten plasma-facing components and discharge enhancement through boron and boron nitride particulate injection

The injection of boron (B) and boron nitride (BN) powders into ASDEX Upgrade H-mode discharges have demonstrated effective control of tungsten influx in low density/collisionality operational regimes, similar to conventional boronization methods. Sub-mm powder particles are gravitationally accelerated into the upper edge of a lower single null H-mode plasma with a boundary shape roughly conforming to the shape of the poloidal midplane limiters. Visible spectroscopy measurements at one of the outer limiter showed increases in both B and N signal levels, as well as elevated B levels in the divertor, and an increase in total radiated power by greater than a factor of two during BN injection. Globally the BN injection improved energy confinement by 10%–20%, associated with improvements in pedestal performance similar to gaseous N injection. Following conditioning discharges with B powder injection, three low gas-fueling discharges with magnetic perturbations for ELM suppression were successfully conducted. Furthermore, these first results suggest that the application of B containing powders can be used to both improve plasma performance in real-time, and to improve overall wall conditions for subsequent discharges.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2019

Multidrug Core–Shell Bead: A System for Bacterial Infection Treatment in Fish

This study was developed to improve the durability and bioavailability of polymer matrix containing the antibacterial agent’s bacitracin (BAC), berberine (BER) and sodium nitroprusside (SNP), an ionotropic gelation method was successfully applied to prepare alginate/chitosan core–shell beads. The structure and properties of different core–shell beads were characterized by scanning electron microscopy (SEM), zeta potential, Fourier transform infrared spectroscopy (FTIR), thermal analysis (DSC), swelling tests, bioadhesive assay, release kinetic profile and antibacterial/antibacteriostatic activity in bacterial model. The morphology of beads was investigated by SEM, display relatively spherical shape and revealed rough surface was also observed the appearance of cracks probably caused by partial collapsing of the polymer network during drying. The diameter means particle size observed was around 1.04 ± 0.13 mm, the particles showed a neutral value, around + 0.305 mV. Using UV–Vis technique was observed a high entrapment efficiency of compounds BAC, BER and SNP (> 95%) in the alginate/chitosan core–shell beads. As demonstrated, there is increase in the swelling degree in pH 6.2. The drug release profile showed a pH-dependent release kinetics. At pH 5.0 the most suitable kinetic model is Higuchi, at pH 6.2 a zero-order model is observed, while at pH 7.4 the Korsmeyer–Peppas model present a good fit. The presence of compounds on beads was confirmed using FTIR analyses, and the results indicated that there is no interaction between drugs and vehicle used in the formulation. We can consider after DSC analysis that beads containing BAC, BER and SNP are thermally more stable than separate formulations having the characteristics required for application at room temperature. The release system produced has physical characteristics that allow the storage of the drugs for long periods of time maintaining their chemical and pharmacological properties unchanged. The percentage of adhesion displayed value of 66%, that indicates the improvement in adherence time on the absorbing surfaces to improves drug bioavailability and effectiveness of compounds. In this study is displayed the additive effect between BAC, BER and SNP shown the potential application of compound combinations as an efficient, novel therapeutic tool for antibiotic-resistant bacterial infections. These results indicate that the proposed strategy improves drug bioavailability and effectiveness of compounds in the treatment of fish.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Blowing Snow at McMurdo Station, Antarctica During the AWARE Field Campaign: Surface and Ceilometer Observations

Blowing snow (BLSN) is an impactful process in cold climates, affecting regional thermodynamics, radiation properties, and the surface mass balance of snow. Though it has significant climatic impacts, the process is still poorly understood and not widely included in weather and climate models. In 2016, the AWARE Field Campaign saw the deployment of a large suite of in situ and remote sensing instruments to McMurdo Station, Antarctica allowing for investigation of BLSN. A ceilometer–based BLSN detection algorithm used elsewhere in Antarctica is applied to data from AWARE, yielding a BLSN frequency of 14.1% compared to 8.2% as detected by human observers. To increase confidence in detections, the algorithm is updated to have shorter temporal averaging and to include a variety of meteorological thresholds to limit false detections due to fog. Efforts to incorporate a laser disdrometer into the algorithm were unsuccessful. An unphysical dependence of particle size distributions on wind speed is found suggesting observations are problematic at wind speeds greater than 10 m s –1 . The revised algorithm detected a BLSN frequency of 7.4%, increasing agreement with human observations and confidence that the process is actively occurring at the observation site. Furthermore, these observations are put into context of a climatology of human observations of BLSN at McMurdo station from 2002–2018. An annual average of 8.0%–14.0% is estimated, with a total annual range of 3.4%–21.3%. Regardless of whether BLSN is observed by humans or instrument, the majority of cases at this location are associated with ongoing precipitation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Resistive wall mode stability and resonant field amplification in MAST high beta plasma

The n=1 (n is the toroidal mode number) resistive wall mode (RWM) instability and the resonant field amplification (RFA) due to a stable RWM response are numerically investigated for a MAST high-pressure plasma scenario, utilizing the MARS-F (Liu Y.Q. et al 2000 Phys. Plasmas 7 3681) and MARS-K (Liu Y.Q. et al 2008 Phys. Plasmas 15 112503) codes, for the purpose of understanding the potential RWM behavior in MAST-U plasmas. Ideal kink stability analysis identifies a target plasma, with parameters similar to that of the reference equilibrium reconstructed from a MAST high-pressure discharge, that accesses the RWM regime. The unstable n=1 RWM for the target equilibrium is subject to strong damping by the plasma toroidal flow and/or the drift kinetic effects from thermal particles. As a result, the mode is found to be stable under the experimental flow conditions, or even without flow stabilization if drift kinetic stabilization is included. The stability prediction is robust against variation of the assumed resistive wall minor radius. Active magneto-hydrodynamic (MHD) spectroscopy modeling, using the magnetic coils designed for controlling the edge localized modes (ELMs) in MAST-U as the antenna, shows strong resonant field amplification due to a stable RWM response in the target plasma. Maximal amplification, of 6-7 times larger than the applied vacuum field within the plasma, is obtained assuming a coil phasing of 120-180 degrees between the upper and lower rows of the ELM control coils. The MHD-kinetic hybrid model predicts generally higher RFA than the fluid model, in particular near the low-field and high-field sides of the plasma boundary surface. Furthermore, the MARS-F/K modeling thus shows that the RWM in MAST-U is subject to strong flow and kinetic stabilization, but can nevertheless be detected by active MHD spectroscopy.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Transport and confinement physics: Chapter 2 of the special issue: on the path to tokamak burning plasma operation

Progress in physics understanding and theoretical model development of plasma transport and confinement (TC) in the ITPA TC Topical Group since the publication of the ITER Physics Basis (IPB) document (Doyle et al 2007 Nucl. Fusion 47 S18) was summarized focusing on the contributions to ITER and burning plasma prediction and control. This paper provides a general and streamlined overview on the advances that were mainly led by the ITPA TC joint experiments and joint activities for the last 15 years (see JEX/JA table in appendix). This paper starts with the scientific strategy and scope of the ITPA TC Topical group and overall picture of the major progress, followed by the progress of each research field: particle transport, impurity transport, ion and electron thermal turbulent transport, momentum transport, impact of 3D magnetic fields on transport, confinement mode transitions, global confinement, and reduced transport modeling. Cross references with other Topical Groups are given in order to highlight overlapped topics, such as the 3D effect on the plasma transport in the edge and L-H transition physics. The increasing overlap between the topical groups is a reflection of the progress on integrating the known physics into comprehensive models that are better and better able to reproduce the plasma transport. In recent years, such integration has become increasingly prevalent when considering transport from the SOL, through the edge pedestal, and into the plasma core. In the near future, increased collaboration also with the magneto-hydrodynamic and energetic particles community will be important as we approach burning plasma conditions in next-step fusion devices. A summary of remaining challenges and next steps for each research field is given in the Summary section.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Active Control of Alfvén Eigenmodes by Externally Applied 3D Magnetic Perturbations

The suppression and excitation of Alfvén eigenmodes have been experimentally obtained, for the first time, by means of externally applied 3D perturbative fields with different spatial spectra in a tokamak plasma. The applied perturbation causes an internal fast-ion redistribution that modifies the phase-space gradients responsible for driving the modes, determining, ultimately their existence. Hybrid kinetic-magnetohydrodynamic simulations reveal an edge resonant transport layer activated by the 3D perturbative field as the responsible mechanism for the fast-ion redistribution. Finally, the results presented here may help to control fast-ion driven Alfvénic instabilities in future burning plasmas with a significant fusion born alpha particle population.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Simulations of short-term exposure to NO 2 and PM 2.5 to inform capture efficiency standards

The California building code requires all new or renovated residential dwelling units to have kitchen exhaust ventilation to manage air pollutants and moisture generated during cooking. Current performance requirements are specified as a minimum airflow and maximum sound level. This report presents an analysis to support consideration of adding a capture efficiency requirement to the code. The analysis uses a physics-based simulation model to calculate air pollutant concentrations in homes that result from cooking and the inflow of outdoor air, mediated by loss and removal process including deposition, dwelling unit ventilation, and the use of a range hood with varying levels of capture efficiency. Calculated pollutant concentrations are compared to relevant, health-based guidelines. The analysis considers the highest 1-hour concentration of nitrogen dioxide (NO 2 ), which is a product of natural gas combustion and the highest 24-hour concentrations of fine particulate matter (PM 2.5 ) which is emitted in substantial quantities from frying, broiling and grilling among other cooking activities. For NO 2 , the analysis considers cooking of a dinner for 3-4 persons consisting of pasta, meat sauce, a par-boiled vegetable, and baked garlic bread. For PM 2.5 , the analysis considers a day in which breakfast emitted particles at the 80th percentile and lunch and dinner entailed particle emissions at the 50th percentile of cooking emission events reported in the literature. Model simulations were performed to determine the level of range hood capture efficiency that will allow these cooking scenarios to occur in the vast majority (>99%) of new homes being built in California while maintaining pollutant concentrations below the health-based guidelines, if the range hood is used throughout cooking. All homes were assumed to have dwelling unit ventilation at the rate required in the building code. Simulation model input parameters were specified using a Monte Carlo approach to represent a range of housing characteristics, outdoor conditions, and indoor pollutant dynamics. Simulation results suggest that requiring a minimum capture efficiency of at least 70% is needed to avoid unacceptably high NO 2 (1-h average concentration of 100 ppb or higher) and at least 60% to avoid unacceptably high PM 2.5 (24-h average of 25 μg/m³ or higher). These results were driven by multi-family homes, which have a smaller volume of air to dilute any pollutants not captured and removed at the cooking area, resulting in higher concentrations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Fast Dissipation of Colliding Alfvén Waves in a Magnetically Dominated Plasma

Magnetic energy around compact objects often dominates over plasma rest mass, and its dissipation can power the object's luminosity. We describe a dissipation mechanism that works faster than magnetic reconnection. The mechanism involves two strong Alfvén waves with anti-aligned magnetic fields B 1 and B 2 that propagate in opposite directions along the background magnetic field B 0 and collide. The collision forms a thin current sheet perpendicular to B 0 , which absorbs the incoming waves. The current sheet is sustained by an electric field E breaking the magnetohydrodynamic condition E < B and accelerating particles to high energies. We demonstrate this mechanism with kinetic plasma simulations using a simple setup of two symmetric plane waves with amplitude A = B 1 / B 0 = B 2 /B 0 propagating in a uniform B 0 . The mechanism is activated when A > 1/2. It dissipates a large fraction of the wave energy, † = (2A - 1)/A 2 , reaching 100% when A = 1. The plane geometry allows one to see the dissipation process in a one-dimensional simulation. We also perform two-dimensional simulations, enabling spontaneous breaking of the plane symmetry by the tearing instability of the current sheet. At moderate A of main interest, the tearing instability is suppressed. Dissipation transitions to normal, slower, magnetic reconnection at A $\gg$ 1. The fast dissipation described in this paper may occur in various objects with perturbed magnetic fields, including magnetars, jets from accreting black holes, and pulsar wind nebulae.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Gamma-Ray Emission from Galaxies Hosting Molecular Outflows

Many star-forming galaxies and those hosting active galactic nuclei show evidence of massive outflows of material in a variety of phases including ionized, neutral atomic, and molecular. Molecular outflows in particular have been the focus of recent interest as they may be responsible for removing gas from the galaxy, thereby suppressing star formation. As material is ejected from the cores of galaxies, interactions of the outflowing material with the interstellar medium can accelerate cosmic rays and produce high-energy gamma rays. In this work, we search for gamma-ray emission from a sample of local galaxies known to host molecular outflows using data collected by the Fermi Large Area Telescope. We employ a stacking technique in order to search for and characterize the average gamma-ray emission properties of the sample. Gamma-ray emission is detected from the galaxies in our sample at the 4.4σ level with a power-law photon index of Γ ≈ 2 in the 1–800 GeV energy range. The emission is found to correlate with tracers of star formation activity, namely the 8–1000 μm infrared luminosity. We also find that the observed signal can be predominantly attributed to H II galaxies hosting energy-driven outflows. While we do not find evidence suggesting that the outflows are accelerating charged particles directly, galaxies with molecular outflows may produce more gamma rays than galaxies without outflows. In particular, the set consisting of gamma-ray-detected galaxies with molecular outflows are nearly perfect calorimeters and may be future targets for searches of high-energy neutrinos.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Analysis of MINERvA tunings of GENIE based on Hadron Multiplicity using Machine Learning

Scientists with the MINERvA neutrino interaction experiment have long studied distributions of hadrons (protons and pions) to improve the models for these reactions. Until now, most work has relied on easy to find, energetic, and well tracked hadrons. But in order to take full advantage of MINERνA data it is necessary to develop an efficient enough tool to recognize hadron tracks with lower energy, more transverse angle and more challenging patterns of activity. In this analysis, a Machine Learning tool based on Convolutional Neural Network and Transfer Learning has been developed to tackle that issue. It is found to be extremely capable of recognizing hadron activities especially when there are few and not very energetic hadrons, the accuracy is 76%. But it is also found that this network is very reluctant to classify too many hadrons. The classification is also affected by the presence of other particles in the event such photons, hadrons below a threshold or neutrons. This network is used to compare hadron multiplicity of data to the MC models and distinguish between different MC tunes. Some MINERνA tunes are explored in this analysis, but none of them described the data very well, especially not for all different hadrons multiplicities at once. Four combinations of those tunes were more successful, but none of them could be recognized as the best one. Nevertheless, this analysis develops an ML network that sets the basis of further exploration of hadron multiplicity as a tool to analyze MC tunes at MINERνA and beyond.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Evaluation of HPK n + - p planar pixel sensors for the CMS Phase-2 upgrade

To cope with the challenging environment of the planned high luminosity upgrade of the Large Hadron Collider (HL-LHC), scheduled to start operation in 2029, CMS will replace its entire tracking system. The requirements for the tracker are largely determined by the long operation time of 10 years with an instantaneous peak luminosity of up to 7.5 × 10 34 cm –2 s –1 in the ultimate performance scenario. Depending on the radial distance from the interaction point, the silicon sensors will receive a particle fluence corresponding to a non-ionizing energy loss of up to $\Phi_{\text {eq}}$ = 3.5 × 10 16 cm –2 . Here this paper focuses on planar pixel sensor design and qualification up to a fluence of $\Phi_{\text {eq}}$ = 1.4 × 10 16 cm –2 . For the development of appropriate planar pixel sensors an R&D program was initiated, which includes $n^+ -p$ sensors on 150 mm (6”) wafers with an active thickness of 150 μm with pixel sizes of 100 × 25 μm 2 and 50 × 50 μm 2 manufactured by Hamamatsu. Single chip modules with ROC4Sens and RD53A readout chips were made. Irradiation with protons and neutrons, as well was an extensive test beam campaign at DESY were carried out. This paper presents the investigation of various assemblies mainly with ROC4Sens readout chips. It demonstrates that multiple designs fulfill the requirements in terms of breakdown voltage, leakage current and efficiency. The single point resolution for 50 × 50 μm 2 pixels is measured as 4.0 μm for non-irradiated samples, and 6.3 μm after irradiation to $\Phi_{\text {eq}}$ = 7.2 × 10 15 cm –2 .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2023

Letter of Intent for a Drell-Yan experiment with a polarized proton target

It is well known that the proton is a spin-1/2 particle, but how the constituents (quarks and gluons) assemble to this quantized spin is still a mystery. There is a worldwide effort to map out the individual contributions to the proton spin. It is established that the quark spins contribute around 30%, while the gluon intrinsic angular momentum is still under active investigation at the Relativistic Heavy Ion Collider. Fully resolving the proton spin puzzle requires information on the orbital angular momentum (OAM) of both quarks and gluons. Recent studies have shown that the so-called transverse momentum dependent parton distribution functions (TMDs) can inform us about the OAM of the partons.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Unsupervised learning for identifying events in active target experiments

This article presents novel applications of unsupervised machine learning methods to the problem of event separation in an active target detector, the Active-Target Time Projection Chamber (AT-TPC). The overarching goal is to group similar events in the early stages of the data analysis, thereby improving efficiency by limiting the computationally expensive processing of unnecessary events. The application of unsupervised clustering algorithms to the analysis of two-dimensional projections of particle tracks from a resonant proton scattering experiment on 46 Ar is introduced. We explore the performance of autoencoder neural networks and a pre-trained VGG16 Simonyan and Zisserman (2015) convolutional neural network. We study clustering performance on both data from a simulated 46 Ar experiment, and real events from the AT-TPC detector. We find that a -means algorithm applied to simulated data in the VGG16 latent space forms almost perfect clusters. Additionally, the VGG16+-means approach finds high purity clusters of proton events for real experimental data. Here, we also explore the application of clustering the latent space of autoencoder neural networks for event separation. While these networks show strong performance, they suffer from high variability in their results.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

Permeability-Engineered Compartmentalization Enables In Vitro Reconstitution of Sustained Synthetic Biology Systems

In nature, biological compartments such as cells rely on dynamically controlled permeability for matter exchange and complex cellular activities. Likewise, the ability to engineer compartment permeability is crucial for in vitro systems to gain sustainability, robustness, and complexity. However, rendering in vitro compartments such a capability is challenging. Here, a facile strategy is presented to build permeability-configurable compartments, and marked advantages of such compartmentalization are shown in reconstituting sustained synthetic biology systems in vitro. Through microfluidics, the strategy produces micrometer-sized layered microgels whose shell layer serves as a sieving structure for biomolecules and particles. In this configuration, the transport of DNAs, proteins, and bacteriophages across the compartments can be controlled an guided by a physical model. Through permeability engineering, a compartmentalized cell-free protein synthesis system sustains multicycle protein production; ≈100 000 compartments are repeatedly used in a five-cycle synthesis, featuring a yield of 2.2 mg mL -1 . Further, the engineered bacteria-enclosing compartments possess near-perfect phage resistance and enhanced environmental fitness. In a complex river silt environment, compartmentalized whole-cell biosensors show maintained activity throughout the 32 h pollutant monitoring. It is anticipated that permeability-engineered compartmentalization should pave the way for practical synthetic biology applications such as green bioproduction, environmental sensing, and bacteria-based therapeutics.

59 BASIC BIOLOGICAL SCIENCES↗