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At least 1,369 records · Page 76

EPCAPE-PT-LANL Measurements: Cloud Condensation Nuclei Counter

Coastal cities offer a unique environment for studying aerosol-cloud interactions and the effects of urban emissions on cloud properties. As part of the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE), the Partitioning Thrust by Los Alamos National Laboratory (EPCAPE-PT-LANL) was conducted. Our campaign focused on measuring the optical and chemical properties of aerosols and their interactions within marine stratocumulus clouds in La Jolla, California. EPCAPE-PT-LANL enhances the primary goals of EPCAPE through innovative observations of vapor-phase transitions between aerosols and cloud droplets, the impact of black carbon on aerosol-cloud dynamics, and the effects of cloud processing on aerosol optical properties. Instrument: Cloud Condensation Nuclei Counter, single column (Droplet Measurements Technology) Files: data_10sec_CCNc.csv, data_10min_CCNc.csv Header: - SuperSaturation[unitless]: The level of supersaturation, expressed as a unitless percentage, at which cloud condensation nuclei (CCN) activity is measured. - NumberConcentration[/cm3]: Number concentration of particles acting as CCN at the baseline supersaturation level, measured in particles per cubic centimeter. - NumberConcentration_SS2[/cm3]: Number concentration of particles acting as CCN at a supersaturation level of 0.2%, measured in particles per cubic centimeter. - NumberConcentration_SS4[/cm3]: Number concentration of particles acting as CCN at a supersaturation level of 0.4%, measured in particles per cubic centimeter. - QualityControl_Flag[bool]: A boolean flag indicating whether the data point passed quality control checks. - CVI_Flag[bool]: A boolean flag indicating whether the Counterflow Virtual Impactor (CVI) was active (true) or inactive (false) during the measurement.

54 ENVIRONMENTAL SCIENCES↗

EPCAPE-PT-LANL Measurements: Ground based counterflow virtual impactor

Coastal cities offer a unique environment for studying aerosol-cloud interactions and the effects of urban emissions on cloud properties. As part of the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE), the Partitioning Thrust by Los Alamos National Laboratory (EPCAPE-PT-LANL) was conducted. Our campaign focused on measuring the optical and chemical properties of aerosols and their interactions within marine stratocumulus clouds in La Jolla, California. EPCAPE-PT-LANL enhances the primary goals of EPCAPE through innovative observations of vapor-phase transitions between aerosols and cloud droplets, the impact of black carbon on aerosol-cloud dynamics, and the effects of cloud processing on aerosol optical properties. Instrument: Ground based counter flow virtual impactor (Brechtel Inc) Data Notes: A factor of 6.7 needs to be applied to all cloud droplet residual concentration to correct the enhancement of the concentration because all the residual samples collected at 100 lpm were delivered into the 15 lpm of CVI sample flow. [https://amt.copernicus.org/articles/5/1259/2012/amt-5-1259-2012.html] Header: - Visibility[m]: The atmospheric visibility at the time of measurement, expressed in meters. - QualityControl_Flag[bool]: A boolean flag indicating whether the measurement passed quality control checks. - Temperature[C]: The ambient temperature at the time of the measurement, expressed in degrees Celsius. - CVI_Flag[bool]: A boolean flag indicating whether the Counterflow Virtual Impactor (CVI) was active (true) or inactive (false) during the measurement. - RelativeHumidity[%]: The relative humidity at the time of the measurement, expressed as a percentage

54 ENVIRONMENTAL SCIENCES↗

ARM Aerial Facility (AAF) - Unmanned Aircraft Systems, Cloud Droplet Probe with QC and lat/lon/alt

The Cloud Droplet Probe (CDP) is designed to measure cloud droplet size distribution from 2 µm to 50 µm. The CDP and an appropriate data system can also calculate various other parameters including particle concentrations, effective diameter (ED), Median Volume Diameter (MVD), and Liquid Water Content (LWC). The b1 level adds standard quality control flags, and merges in flight navigation data.

54 ENVIRONMENTAL SCIENCES↗

CACTI CSAPR2 Taranis Retrievals

Taranis is an end-to-end processing chain for radar data written in Python with C extension for computation performance. Features include: masking for quality control, specific differential phase (Kdp), attenuation correction for reflectivity factor (Z) and differential reflectivity (Zdr) in rain, and additional geophysical retrievals. Retrievals are mostly drawn from literature or open-source software when appropriate, and have been tested, tuned, and modified to work with one another cohesively rather than using isolated off-the-shelf algorithms. Incorporated algorithms include hydrometeor (echo) identification, rain water content, raindrop mass-weighted mean diameter (gamma size distribution assumption), and rainfall rate (QPE). Taranis data sets exist for CSAPR2 PPI, HSRHI, and sector RHI scans. Cartesian-gridded data sets were also produced as well as a near-surface rain rate retrieval. More details can be found in the README.

54 ENVIRONMENTAL SCIENCES↗

KAZR2CFRGEQC

Ka-Band ARM Zenith Radar, 2nd Generation, General Sensitivity, Quality Control Corrections Applied

Radar Doppler↗

KAZR2CFRMDQC

Ka-Band ARM Zenith Radar, 2nd Generation, Medium Sensitivity, Quality Control Corrections Applied

Radar Doppler↗

KAZR2CFRPRQC

Ka-Band ARM Zenith Radar, 2nd Generation, Precipitation Mode, Quality Control Corrections Applied

Radar Doppler↗

NCAR/EOL ISFS Data for LASSO-CACTI Overview Paper

5 minute averages of surface meteorology and flux data collected by the NCAR/EOL Integrated Surface Flux System (ISFS) at 15 sites during the RELAMPAGO field campaign. These data have been quality-controlled and are available in NetCDF format. Winds reported by the sonic anemometers have been tilt corrected and rotated into geographic coordinates. Data providence, citation, and acknowledgement This ARM data set is a copy of v2.0 of the NCAR data set obtained on 6-Jun-2024 from https://doi.org/10.26023/ZPHJ-JW9W-2B0Y. The citation for the original data source is: NCAR/EOL In-situ Sensing Facility, Oncley, S. 2021. NCAR/EOL ISFS Surface Meteorology and Flux Products, 5-minute. Version 2.0. UCAR/NCAR - Earth Observing Laboratory. https://doi.org/10.26023/ZPHJ-JW9W-2B0Y Accessed 06 Jun 2024. In addition to the citation reference and any other acknowledgements, please acknowledge NCAR/EOL in your publications with text such as: "Data provided by NCAR/EOL under the sponsorship of the National Science Foundation. https://data.eol.ucar.edu/"

atmosphere: surface↗

NGEE Arctic Leaf Spectral Absorptance, Utqiagvik (Barrow), Alaska, 2015-2016

Leaf level reflectance on each sample leaf was measured using a portable, full range (i.e. 0.35 to 2.5 microns) Spectra Vista Corporation (SVC) HR-1024i spectroradiometer, together with a leaf clip assembly with an internal, calibrated light source (SVC, Poughkeepsie, NY, USA). Each measurement was referenced against a LabSphere Spectralon (R) standard (LabSphere, Inc., North Sutton, NH, USA) to calculate leaf reflectance from the ratio of target and standard calibrated radiance measurements for each leaf. For each leaf, we collected two to five measurements over the leaf adaxial surface to calculate an average, depending on the leaf size and morphology. Spectral discontinuities in the detector overlap areas were corrected using the SVC instrument software prior to sample averaging and other quality control steps, as described previously (Serbin et al., 2014) using the R-FieldSpectra package (https://github.com/serbinsh/R-FieldSpectra). Refer to Serbin et al (2017) for the complete spectral reflectance dataset. We then calculated leaf spectral absorptance using the measured leaf reflectance following the approach of Wu et al., (2018), based on the original method derived by Shiklomanov et al., (2016) using the PEcAnRTM package (https://github.com/PecanProject/pecan/tree/develop/modules/rtm). This dataset contains one xlsx file, one csv file, and one pdf file.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

tRNA ligase structure reveals kinetic competition between non-conventional mRNA splicing and mRNA decay

Yeast tRNA ligase (Trl1) is an essential trifunctional enzyme that catalyzes exon-exon ligation during tRNA biogenesis and the non-conventional splicing of HAC1 mRNA during the unfolded protein response (UPR). The UPR regulates the protein folding capacity of the endoplasmic reticulum (ER). ER stress activates Ire1, an ER-resident kinase/RNase, which excises an intron from HAC1 mRNA followed by exon-exon ligation by Trl1. The spliced product encodes for a potent transcription factor that drives the UPR. Here we report the crystal structure of Trl1 RNA ligase domain from Chaetomium thermophilum at 1.9 Å resolution. Structure-based mutational analyses uncovered kinetic competition between RNA ligation and degradation during HAC1 mRNA splicing. Incompletely processed HAC1 mRNA is degraded by Xrn1 and the Ski/exosome complex. We establish cleaved HAC1 mRNA as endogenous substrate for ribosome-associated quality control. We conclude that mRNA decay and surveillance mechanisms collaborate in achieving fidelity of non-conventional mRNA splicing during the UPR.

59 BASIC BIOLOGICAL SCIENCES↗

Universally high transcript error rates in bacteria

Errors can occur at any level during the replication and transcription of genetic information. Genetic mutations derived mainly from replication errors have been extensively studied. However, fundamental details of transcript errors, such as their rate, molecular spectrum, and functional effects, remain largely unknown. To globally identify transcript errors, we applied an adapted rolling-circle sequencing approach to Escherichia coli, Bacillus subtilis, Agrobacterium tumefaciens, and Mesoplasma florum, revealing transcript-error rates 3 to 4 orders of magnitude higher than the corresponding genetic mutation rates. The majority of detected errors would result in amino-acid changes, if translated. With errors identified from 9929 loci, the molecular spectrum and distribution of errors were uncovered in great detail. A G→A substitution bias was observed in M. florum, which apparently has an error-prone RNA polymerase. Surprisingly, an increased frequency of nonsense errors towards the 3' end of mRNAs was observed, suggesting a Nonsense-Mediated Decay-like quality-control mechanism in prokaryotes.

59 BASIC BIOLOGICAL SCIENCES↗

Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria

To reach their final destinations, outer membrane proteins (OMPs) of gram-negative bacteria undertake an eventful journey beginning in the cytosol. Multiple molecular machines, chaperones, proteases, and other enzymes facilitate the translocation and assembly of OMPs. These helpers usually associate, often transiently, forming large protein assemblies. They are not well understood due to experimental challenges in capturing and characterizing protein-protein interactions (PPIs), especially transient ones. Using AF2Complex, we introduce a high-throughput, deep learning pipeline to identify PPIs within the Escherichia coli cell envelope and apply it to several proteins from an OMP biogenesis pathway. Among the top confident hits obtained from screening ~1500 envelope proteins, we find not only expected interactions but also unexpected ones with profound implications. Subsequently, we predict atomic structures for these protein complexes. These structures, typically of high confidence, explain experimental observations and lead to mechanistic hypotheses for how a chaperone assists a nascent, precursor OMP emerging from a translocon, how another chaperone prevents it from aggregating and docks to a β-barrel assembly port, and how a protease performs quality control. This work presents a general strategy for investigating biological pathways by using structural insights gained from deep learning-based predictions.

60 APPLIED LIFE SCIENCES↗

Transportation Secure Data Center

The Transportation Secure Data Center (TSDC) at https//www.nrel.gov/tsdc provides free access to detailed transportation data from travel surveys and studies conducted across the nation. It features millions of data points including second-by-second GPS readings, vehicle characteristics, and demographics for all modes of travel. NREL screens the initial data for quality control, translates each data set into a consistent format, and interprets the data for spatial analysis. NREL processing routines add information on fuel economy and road grades and join data points to the road network. NREL maintains the TSDC in partnership with the U.S. Department of Transportation and the U.S. Department of Energy. Before viewing the data for the first time, you will be required to fill out a short registration form. If you use TSDC data in a publication, please notify NREL at tsdc@nrel.gov and include a citation consistent with the following format: "Transportation Secure Data Center." ([YEAR]). National Renewable Energy Laboratory. Accessed [DATE]: www.nrel.gov/tsdc.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗