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At least 1,369 records · Page 76

Spectral Deconvolution of Electron-Bifurcating Flavoproteins

Electron-bifurcating flavoproteins catalyze the tightly coupled reduction of high- and low-potential acceptors using a median-potential electron donor, and are invariably complex systems with multiple redox-active centers in two or more subunits. Methods are described that permit, in favorable cases, the deconvolution of spectral changes associated with reduction of specific centers, making it possible to dissect the overall process of electron bifurcation into individual, discrete steps.

electron bifurcation↗

Newton-Okounkov bodies of chemical reaction systems

Despite their noted potential in polynomial-system solving, there are few concrete examples of Newton-Okounkov bodies arising from applications. Accordingly, in this paper, we introduce a new application of Newton-Okounkov body theory to the study of chemical reaction networks and compute several examples. An important invariant of a chemical reaction network is its maximum number of positive steady states Here, we introduce a new upper bound on this number, namely the ‘Newton-Okounkov body bound’ of a chemical reaction network. Further, through explicit examples, we show that the Newton-Okounkov body bound of a network gives a good upper bound on its maximum number of positive steady states. We also compare this Newton-Okounkov body bound to a related upper bound, namely the mixed volume of a chemical reaction network, and find that it often achieves better bounds.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Critical cooling rates for amorphous-to-ordered complexion transitions in Cu-rich nanocrystalline alloys

Amorphous complexions in nanocrystalline metals have the potential to improve mechanical properties and radiation tolerance, as well as resistance to grain growth. In this study, the stability of amorphous complexions in binary and ternary Cu-based alloys is investigated by observing the effect of cooling rate from high temperature on the occurrence of amorphous-to-ordered complexion transitions. Bulk Cu-Zr and Cu-Zr-Hf alloy samples were annealed to induce boundary premelting and then quenched through a procedure that induces a gradient of local cooling rate through the sample height. Amorphous complexion thickness distributions were found to be invariant to local cooling rate in the Cu-Zr-Hf alloy, demonstrating enhanced stability of the amorphous complexion structure compared to the Cu-Zr alloy, which had thinner amorphous complexions in the regions that were slowly cooled. The experimental results are used to construct time-temperature-transformation diagrams for the amorphous-to-ordered complexion transition in both the binary and ternary alloys, enabling a deeper understanding of the influence of cooling rate and grain boundary chemistry on complexion transitions. In conclusion, the critical cooling rate necessary to avoid complexion transitions in the ternary alloy is found to be at least three orders of magnitude slower than that for the binary alloy.

36 MATERIALS SCIENCE↗

Thermodynamic properties of the Nd-Bi system via emf measurements, $\mathrm{DFT}$ calculations, machine learning, and $\mathrm{CALPHAD}$ modeling

Thermodynamic properties of the Nd-Bi system were investigated using a combination of experimental measurements, first-principles calculations based on density functional theory (DFT), data mining and machine learning (DM + ML) predictions, and calculation of phase diagrams (CALPHAD) modeling. The electromotive force (emf) of Nd-Bi alloys in molten LiCl-KCl-NdCl 3 at 773–973 K was measured via coulometric titration of Nd into Bi for the determination of thermochemical properties such as activity coefficients and solubilities of Nd in Bi. A new peritectic reaction of [liquid + NdBi 2 = Nd 3 Bi 7 ] at 774 K was confirmed using differential scanning calorimetry, structural (X-ray diffraction), and microstructural (scanning electron microscopy) analyses. The unknown crystal structure of NdBi2 was suggested to be a mixture of the anti-La 2 Sb configuration and the La 2 Te-type configuration based on ML predictions for over 26,000 data-mined AB 2 -type configurations together with DFT-based verifications. Using the newly acquired experimental data and DFT-based calculations, the thermodynamic description of the Nd-Bi system was remodeled, and a more complete Nd-Bi phase diagram was calculated, including the Nd 3 Bi 7 compound, invariant transition reactions, and liquidus temperatures.

36 MATERIALS SCIENCE↗

The complexity of { 11 2 ¯ 1 } twin interface structure and energetics in HCP materials

Here, the quest for a deeper understanding of the mechanical properties of HCP alloys has been an ongoing effort. Due to the lack of a sufficient number of slip systems, twin nucleation and migration originate as a substantial plastic deformation mechanism in HCP metals. The paper uncovers the energetics and atomistic mechanism of the {$11\overline{2}1$} < $11\overline{2}6$ > which is one of the most prominent twin modes in HCP materials that has not been fully understood. In view of corrugated {$11\overline{2}1$} interfaces, the positioning of lattice/motif atoms needs to be clarified. First, we establish the initial twin boundary (TB) structure unambiguously via the lattice offsets resulting in volume invariancy and correct relative positioning of the twin variants. Secondly, the TB migration mechanism is determined from a crystallographic (zero net shuffle, $Σ\vec{s}$ = 0) and energetic standpoints (minimum energy path). The Generalized Planar Fault Energy (GPFE) curves are calculated for Ti, Hf, Mg, and Zr. Such GPFE curves for this twin mode are calculated for the first time, and point to unusually high unstable energies (300-850 mJ/m 2 ), and low migration barriers (<60 mJ/m 2 ) for twinning accompanied with large shuffle magnitudes, |$\vec{s}$|, comparable to the Burger’s vector (|$\vec{s}$| ≅ $b_e$ > 0.44Å)

36 MATERIALS SCIENCE↗

The influence of cooling rates on strain phase diagrams and domain structures of ferroelectric thin films: A case study of PbTiO 3

Strain engineering has been established as an effective approach to control phase equilibria, domain configurations, and functional properties of ferroelectric thin films. Temperature-strain phase diagrams have been used as powerful tools for providing insights into strain engineering. However, almost all existing phase diagrams established using the phase-field approach assume quenching conditions without considering actual cooling rates during the post-deposition annealing process of ferroelectric thin films. Within this work, we systematically investigate the influence of cooling rates on domain structures and the strain-phase diagram of ferroelectric thin films using phase-field simulations, taking PbTiO 3 thin films as a model system. We found that both the position of phase boundaries in the strain phase diagrams and the domain morphology are significantly influenced by the cooling rates. It is revealed that while the paraelectric-ferroelectric phase boundary remains invariant, the phase boundaries between single-phase and multi-phase regions tend to shift toward the corresponding multi-phase region as the cool rate reduces. Slow cooling generally leads to more ordered domain structures with increased domain size. Using the obtained equilibrium domain structures, we calculated effective thermal conductivities and found significant variations that can be tuned by the cooling rates. In conclusion, this work reveals an underexplored yet critical impact of cooling rates on phase equilibria and domain structures in ferroelectric thin films, which may inspire further fine-tuning of domains and domain walls in low-dimensional ferroelectrics for multifunctional applications.

Domain structures↗

SIF-based GPP modeling for evergreen forests considering the seasonal variation in maximum photochemical efficiency

Solar-induced chlorophyll fluorescence (SIF) has shown great potential in estimating gross primary production (GPP). However, their quantitative relationship is not invariant, which undermines the reliability of empirical SIF-based GPP estimation at fine spatiotemporal scales, especially under extreme conditions. In this study, we developed a parsimonious mechanistic model for SIF-based GPP estimation in evergreen needle forests (ENF) by employing the Mechanistic Light Response framework and Eco-Evolutionary theory to describe the light and dark reactions during photosynthesis, respectively. Specifically, we found that considering the seasonal variation in a key parameter of the MLR framework, the maximum photochemical efficiency of photosystem II (Φ PSIImax ), can avoid the GPP overestimation in winter and early spring due to the relatively low environmental sensitivity of SIF. Compared to the estimates from other benchmark models, our GPP estimates were closer to the 1: 1 line and had higher accuracy (average R 2 = 0.86, RMSE=1.99 μmol m -2 s -1 ) across sites. Furthermore, the changes in the relationship between SIF and J (refers to the electron transport rate) contribute a lot to the dynamic SIF–GPP relationship in this study, while the J–GPP relationship is less variant when the temperature drops. Further, the seasonal variation in the SIF–J relationship, especially the reduction in its slope at low temperatures, is found largely explained by the Φ PSIImax . These results indicate the importance of the uncertainty caused by the variation in the SIF–J relationship for SIF-based GPP estimation, and the consideration of changes in Φ PSIImax under extreme conditions (such as severe winter in this study) is crucial for the improvement of GPP estimation via SIF.

59 BASIC BIOLOGICAL SCIENCES↗

A covariant simultaneous action for branes

Highlights: • A novel variational approach is presented. • It provides a shortcut towards the second variation of geometrical models. • This should be of interest, for its generality, to various areas of theoretical physics. - Abstract: A covariant simultaneous action for branes in an arbitrary curved background spacetime is considered. The term ‘simultaneous’ is imported from variational calculus and refers to the fact that extremization of the action produces at once both the first and second variations of a given geometrical action for the brane. The action depends on a pair of independent field variables, the brane embedding functions, through the canonical momentum of a reparametrization invariant geometric model for the brane, and an auxiliary vector field. The form of the action is analogous to a symplectic potential. Extremization of the simultaneous action produces at once the equations of motion and the Jacobi equations for the brane geometric model, and it also provides a convenient shortcut towards its second variation. In this note, we consider geometric models depending only on the intrinsic geometry of the brane worldvolume, and discuss briefly the generalization to extrinsic geometry dependent models. The approach is illustrated for Dirac–Nambu–Goto [DNG] branes. For a relativistic particle, a simultaneous action was introduced by Ba z-dot ański, that served as an inspiration for the present work.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Diagonal entropy and topological phase transitions in extended Kitaev chains

We investigate the diagonal entropy for ground states of the extended Kitaev chains with extensive pairing and hopping terms. The systems contain rich topological phases equivalently represented by topological invariant winding numbers and Majorana zero modes. Both the finite size scaling law and block scaling law of the diagonal entropy are studied, which indicates that the diagonal entropy demonstrates volume effect. The parameter of volume term is regarded as the diagonal entropy density, which can identify the critical points of symmetry-protected topological phase transitions efficiently in the studied models, even for those with higher winding numbers. The formulation of block scaling law and the capability of diagonal entropy density in detecting topological phase transitions are independent of the chosen bases. In order to manifest the advantage of diagonal entropy, we also calculate the global entanglement, which cannot show clear signatures of the topological phase transitions. This work provides a new quantum-informatic approach to characterize the feature of the topologically ordered states and may motivate a deep understanding of the quantum coherence and diagonal entropy in various condensed matter systems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Near-threshold incoherent pion photoproduction on the deuteron with final-state interaction effects

Highlights: • Incoherent pion photoproduction on the deuteron near threshold is investigated including rescattering effects. • For the first time, polarization observables are predicted near threshold. • The influence of NN-FSI effect is moderate in the π{sup 0}-production. • πN-rescattering has a noticeable contribution only in the π{sup 0}-production. • The unpolarized cross sections have a satisfactory agreement with experiment and other theories. - Abstract: Incoherent pion photoproduction on the deuteron γd→πNN is investigated in the energy region E{sub γ}{sup thr}≤E{sub γ}≤ 160 MeV. The model applied contains the amplitudes of the impulse approximation as well as the NN and πN rescattering in the final state. For the elementary γN→πN amplitude, the unitary isobar MAID-2007 model is used. This model is parameterized in terms of invariant amplitudes and allows one to give a more reliable description of the threshold region. The half-off-shell NN and πN scattering amplitudes are obtained from separable representations of realistic NN and πN interactions, respectively. For the first time, numerical results for the linear photon asymmetry Σ, vector T{sub 11} and tensor T{sub 2M} (M=0,1,2) deuteron spin asymmetries for the reactions γd→π{sup −}pp, γd→π{sup +}nn, and γd→π{sup 0}np are presented. In addition, results for the unpolarized differential and total cross sections are given. We found that the influence of NN rescattering is moderate in both charged-and neutral-pion production channels, whereas πN rescattering is almost negligible in the charged-pion production channels which is not the case in neutral-pion production since a noticeable contribution is obtained. The calculated results for unpolarized differential and total cross sections are compared with the available experimental data and other theoretical models, and a satisfactory agreement is obtained.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Strong-coupling expansion of multi-band interacting models: Mapping onto the transverse-field J 1 - J 2 Ising model

We investigate a class of two-dimensional two-band microscopic models in which the inter-band repulsive interactions play the dominant role. We first demonstrate three different schemes of constraining the ratios between the three types of inter-band interactions – density-density, spin exchange, and pair-hopping – that render the model free of the fermionic sign-problem for any filling and, consequently, amenable to efficient Quantum Monte Carlo simulations. We then study the behavior of these sign-problem-free models in the strong-coupling regime. In the cases where spin-rotational invariance is preserved or lowered to a planar symmetry, the strong-coupling ground state is a quantum paramagnet. However, in the case where there is only a residual Ising symmetry, the strong-coupling expansion maps onto the transverse-field J 1 - J 2 Ising model, whose pseudospins are associated with local inter-band magnetic order. We show that by varying the band structure parameters within a reasonable range of values, a variety of ground states and quantum critical points can be accessed in the strong-coupling regime, some of which are not realized in the weak-coupling regime. Here, we compare these results with the case of the single-band Hubbard model, where only intra-band repulsion is present, and whose strong-coupling behavior is captured by a simple Heisenberg model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Casimir effect in Very Special Relativity at finite temperature

Recently a great deal of interest in field theories formulated in a Lorentz violating framework has been developed. Here the Very Special Relativity (VSR) is considered. The main aspect in the VSR proposal is that laws of physics are invariant under the subgroups of the Poincaré group preserving the basic elements of special relativity. An important point is that the photon acquires a mass. In this context, the energy–momentum tensor for the electromagnetic field is calculated. From this, the Stefan–Boltzmann law and Casimir effect at finite temperature in VSR are obtained. The effects of temperature are introduced using the Thermo Field Dynamics (TFD) formalism. A comparative analysis with the Casimir effect for the standard electromagnetic case is developed.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Electromagnetic and gravitational interactions from Lagrangian mechanics

Highlights: • Background Maxwell and Einstein fields are universal features of Lagrangian systems. • The Lagrangian function is promoted to a dynamic field. • The Einstein–Maxwell theory is derived from Lagrangian mechanics. Background fields of electromagnetic and gravitational type emerge in the low kinetic energy limit of any regular Lagrangian system and, in particular, in the corresponding limit of any spacetime theory in which the free motion of test particles is described by an unspecified regular Lagrangian. Electromagnetic and gravitational type interactions are therefore a universal feature of low kinetic energy Lagrangian systems. These background interactions can be consistently turned into dynamic Einstein–Maxwell fields by promoting the Lagrangian function to a dynamic scalar field on the tangent bundle of the configuration space. Accordingly, Einstein–Maxwell theory can be deduced from the assumption that the motion of elementary test particles in spacetime is described by Lagrangian mechanics. For higher kinetic energy-type values, identified with the square of the invariant mass of the particle, the Lagrangian induces higher rank interactions that seem however too weak to have been detected in spacetime physics, but which might prove relevant at the Planck scale.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Theory of multi-orbital topological superconductivity in transition metal dichalcogenides

We study possible superconducting states in transition metal dichalcogenide (TMD) monolayers, assuming an on-site pairing potential that includes both intra- and inter-orbital terms. We find that if the mirror symmetry with respect to the system’s plane is broken (e.g., by a substrate), this type of pairing can give rise to unconventional superconductivity, including time-reversal-invariant nodal and fully gapped topological phases. Using a multi-orbital renormalization group procedure, we show how these phases may result from the interplay between the local Coulomb repulsion, Hund’s rule coupling, and phonon-mediated attraction. In particular, for a range of interaction parameters, the system transitions from a trivial phase to a nodal phase and finally to a gapped topological phase upon increasing the strength of the mirror symmetry breaking term.

36 MATERIALS SCIENCE↗

Geometry and entanglement in the scattering matrix

A formulation of nucleon–nucleon scattering is developed in which the S-matrix, rather than an effective-field theory (EFT) action, is the fundamental object. Spacetime plays no role in this description: the S-matrix is a trajectory that moves between RG fixed points in a compact theory space defined by unitarity. This theory space has a natural operator definition, and a geometric embedding of the unitarity constraints in four-dimensional Euclidean space yields a flat torus, which serves as the stage on which the S-matrix propagates. Trajectories with vanishing entanglement are special geodesics between RG fixed points on the flat torus, while entanglement is driven by an external potential. The system of equations describing S-matrix trajectories is in general complicated, however the very-low-energy S-matrix –that appears at leading-order in the EFT description– possesses a UV/IR conformal invariance which renders the system of equations integrable, and completely determines the potential. In this geometric viewpoint, inelasticity is in correspondence with the radius of a three-dimensional hyperbolic space whose two-dimensional boundary is the flat torus. This space has a singularity at vanishing radius, corresponding to maximal violation of unitarity. The trajectory on the flat torus boundary can be explicitly constructed from a bulk trajectory with a quantifiable error, providing a simple example of a holographic quantum error correcting code.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Current-conserving relativistic linear response for collisional plasmas

Here we investigate the response of a relativistic plasma to electromagnetic fields in the framework of the Boltzmann equation incorporating a collision term in the relaxation rate approximation selected in a form assuring current conservation. We obtain an explicit solution for the linearized perturbation of the Fermi–Dirac equilibrium distribution in terms of the average relaxation rate k. We study the resulting covariant, gauge invariant, and current conserving form of the polarization tensor in the ultrarelativistic and non-relativistic limits. We evaluate the susceptibility in the ultrarelativistic limit and explore their dependence on k. Finally, we study the dispersion relations for the longitudinal and transverse poles of the propagator. We show that for k >2ω p , where ω p is the plasma frequency, the plasma wave modes are overdamped. In the opposite case, k$\ll$ ω p , the propagating plasma modes are weakly damped.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Cauchy data space and multisymplectic formulation of conformal classical field theories

In this article we inspect the dynamics of classical field theories with a local conformal behavior. Our interest in the multisymplectic setting comes from its suitable description of field theories, and the conformal character has been added to account for field theories that are scale invariant, flat spaces, and because some conformal fields can be exactly solved or classified. In particular, we will solve the example of a conformal scalar field using the geometric Hamilton–Jacobi theory that is explicitly proposed for conformal fields on a multisymplectic manifold. To complete the geometric approach to study field theories, we propose the Hamilton–Jacobi theory for conformal fields in a Cauchy data space, in which space and time are split separately and the dynamics is depicted in an infinite-dimensional manifold.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

New solutions of coupled nonlocal NLS and coupled nonlocal mKdV equations

In this study, we provide several novel solutions of the coupled Ablowitz–Musslimani (AM) version of the nonlocal nonlinear Schrödinger (NLS) equation and the coupled nonlocal modified Korteweg–de Vries (mKdV) equation. In each case we compare and contrast the corresponding solutions of the relevant coupled local equations. Further, we provide new solutions of the coupled local NLS and coupled local mKdV equations which are not the solutions of the corresponding nonlocal equations. We also show that the nonlocal coupled (as well as uncoupled) mKdV equations have hidden Galilean invariance and admit novel solutions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗