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This report presents the financial and system data requirements to support the financial and performance testing of the energy storage systems funded under the Washington State Clean Energy Fund.
The global file system (GFS) is a prototype design for a distributed file system in which cluster nodes physically share storage devices connected via a network-like fiber channel. Networks and network-attached storage devices have advanced to a level of performance and extensibility so that the previous disadvantages of shared disk architectures are no longer valid. This shared storage architecture attempts to exploit the sophistication of storage device technologies whereas a server architecture diminishes a device's role to that of a simple component. GFS distributes the file system responsibilities across processing nodes, storage across the devices, and file system resources across the entire storage pool. GFS caches data on the storage devices instead of the main memories of the machines. Consistency is established by using a locking mechanism maintained by the storage devices to facilitate atomic read-modify-write operations. The locking mechanism is being prototyped in the Silicon Graphics IRIX operating system and is accessed using standard Unix commands and modules.
Neuroscience is entering the era of `extreme data` with little experience and few plans for the associated volume, velocity, variety, and veracity challenges. This is a serious impediment for both the sharing of data across labs, as well as the utilization of modern and high-performance computing capabilities to enable data driven discovery. Here, we introduce BRAINformat, a novel file format and model for management and storage of neuroscience data. The BRAINformat library defines application-independent design concepts and modules that together create a general framework for standardization of scientific data. We describe the formal specification of scientific data standards, which facilitates sharing and verification of data and formats. We introduce the concept of Managed Objects, enabling semantic components of data formats to be specified as self-contained units, supporting modular and reusable design of data format components and file storage. The BRAINformat is built off of HDF5, enabling portable, scalable, and self-describing data storage. We introduce the novel concept of Relationship Attributes for modeling and use of semantic relationships between data objects, and discuss the annotation of data using dedicated data annotation modules provided by the BRAINformat library. Based on these concepts we implement dedicated, application-oriented modules and design a data standard for neuroscience data.The BRAINformat software library is open source, easy-to-use, and provides detailed user and developer documentation and is freely available at: https://bitbucket.org/oruebel/brainformat.
As scientific computing users migrate to petaflop platforms that promise to generate multi-terabyte datasets, there is a growing need in the community to be able to embed sophisticated analysis algorithms in the computing platforms' storage systems. Data Warehouse Appliances (DWAs) are attractive for this work, due to their ability to store and process massive datasets efficiently. While DWAs have been utilized effectively in data-mining and informatics applications, they remain largely unproven in scientific workloads. In this paper we present our experiences in adapting two mesh analysis algorithms to function on five different DWA architectures: two Netezza database appliances, an XtremeData dbX database, a LexisNexis DAS, and multiple Hadoop MapReduce clusters. The main contribution of this work is insight into the differences between these DWAs from a user's perspective. In addition, we present performance measurements for ten DWA systems to help understand the impact of different architectural trade-offs in these systems.
Less processing and storage of data needed. Mathematical basis developed for Kalman filtering of sequential measurements of range from single-channel receiver in Global Positioning System (GPS) to each of several navigation satellites. Range filtering involves separate applications of kinematic Kalman tracking filter to measurements of signal from each satellite in use. State vector consists of pseudorange and time derivatives. Main advantages: simplification of tuning and decreases in required amounts of storage and processing of data for navigation in ships, airplanes, and ground vehicles.
Hadoop distributed file system (HDFS) is becoming more popular in recent years as a key building block of integrated grid storage solution in the field of scientific computing. Wide Area Network (WAN) data transfer is one of the important data operations for large high energy physics experiments to manage, share and process datasets of PetaBytes scale in a highly distributed grid computing environment. In this paper, we present the experience of high throughput WAN data transfer with HDFS-based Storage Element. Two protocols, GridFTP and fast data transfer (FDT), are used to characterize the network performance of WAN data transfer.
This report contains the abstracts and technical papers from the Second International Workshop on Software Engineering and Code Design in Parallel Meteorological and Oceanographic Applications, held June 15-18, 1998, in Scottsdale, Arizona. The purpose of the workshop is to bring together software developers in meteorology and oceanography to discuss software engineering and code design issues for parallel architectures, including Massively Parallel Processors (MPP's), Parallel Vector Processors (PVP's), Symmetric Multi-Processors (SMP's), Distributed Shared Memory (DSM) multi-processors, and clusters. Issues to be discussed include: (1) code architectures for current parallel models, including basic data structures, storage allocation, variable naming conventions, coding rules and styles, i/o and pre/post-processing of data; (2) designing modular code; (3) load balancing and domain decomposition; (4) techniques that exploit parallelism efficiently yet hide the machine-related details from the programmer; (5) tools for making the programmer more productive; and (6) the proliferation of programming models (F--, OpenMP, MPI, and HPF).
Color Doppler flow mapping has played an important role in clinical echocardiography. Most of the clinical work, however, has been primarily qualitative. Although qualitative information is very valuable, there is considerable quantitative information stored within the velocity map that has not been extensively exploited so far. Recently, many researchers have shown interest in using the encoded velocities to address the clinical problems such as quantification of valvular regurgitation, calculation of cardiac output, and characterization of ventricular filling. In this article, we review some basic physics and engineering aspects of color Doppler echocardiography, as well as drawbacks of trying to retrieve velocities from video tape data. Digital storage, which plays a critical role in performing quantitative analysis, is discussed in some detail with special attention to velocity encoding in DICOM 3.0 (medical image storage standard) and the use of digital compression. Lossy compression can considerably reduce file size with minimal loss of information (mostly redundant); this is critical for digital storage because of the enormous amount of data generated (a 10 minute study could require 18 Gigabytes of storage capacity). Lossy JPEG compression and its impact on quantitative analysis has been studied, showing that images compressed at 27:1 using the JPEG algorithm compares favorably with directly digitized video images, the current goldstandard. Some potential applications of these velocities in analyzing the proximal convergence zones, mitral inflow, and some areas of future development are also discussed in the article.
As the need for Big Data in science becomes ever more relevant, networks around the world are upgrading their infrastructure to support high-speed interconnections. To support its mission, the high-energy physics community as a pioneer in Big Data has always been relying on the Fermi National Accelerator Laboratory to be at the forefront of storage and data movement. This need was reiterated in recent years with the data-taking rate of the major LHC experiments reaching tens of petabytes per year. At Fermilab, this resulted regularly in peaks of data movement on the Wide area network (WAN) in and out of the laboratory of about 30 Gbit/s and on the Local are network (LAN) between storage and computational farms of 160 Gbit/s. To address these ever increasing needs, as of this year Fermilab is connected to the Energy Sciences Network (ESnet) through a 100 Gb/s link. To understand the optimal system-and application-level configuration to interface computational systems with the new highspeed interconnect, Fermilab has deployed a Network Research & Development facility connected to the ESnet 100G Testbed. For the past two years, the High Throughput Data Program (HTDP) has been using the Testbed to identify gaps in data movement middleware [5] when transferring data at these high-speeds. The program has published evaluations of technologies typically used in High Energy Physics, such as GridFTP [4], XrootD [9], and Squid [8]. Furthermore, this work presents the new R&D facility and the continuation of the evaluation program.
A summary of technical accomplishments from the Livewire Data Platform since the 2024 Annual Merit Review.
Emerging technologies have provided unprecedented opportunities to transform information into knowledge and disseminate them in a much faster, cheaper, and userfriendly mode. We have set up a system to produce and disseminate high level (gridded) ocean surface wind data from the NASA Scatterometer and European Remote Sensing missions. The data system is being expanded to produce real-time gridded ocean surface winds from an improved sensor SeaWinds on the Quikscat Mission. The wind field will be combined with hydrologic parameters from the Tropical Rain Measuring Mission to monitor evolving weather systems and natural hazard in real time. It will form the basis for spacebased Ocean Surface Exchange Data Analysis System (SOSEDAS) which will include the production of ocean surface momentum, heat, and water fluxes needed for interdisciplinary studies of ocean-atmosphere interaction. Various commercial or non-commercial software tools have been compared and selected in terms of their ability in database management, remote data accessing, graphical interface, data quality, storage needs and transfer speed, etc. Issues regarding system security and user authentication, distributed data archiving and accessing, strategy to compress large-volume geophysical and satellite data/image. and increasing transferring speed are being addressed. A simple and easy way to access information and derive knowledge from spacebased data of multiple missions is being provided. The evolving 'knowledge system' will provide relevant infrastructure to address Earth System Science, make inroads in educating an informed populace, and illuminate decision and policy making.
Modern advanced Phasor Measurement Units (PMUs) are developed with ultra-high reporting rates to meet the demand for monitoring the power systems dynamics in detail. Due to the large volume of data, the communication and storage systems are seriously challenged with the presence of Ultra-High-Density (UHD) synchrophasor and Point on Wave (POW) data. Therefore, it is an urgent task to compress the UHD data for more efficient communication and data storage. This paper proposes several methods to compress the synchrophasor and POW data in a lossless manner. First, an Improved-Time-Series-Special Compression (ITSSC) method is proposed to compress the UHD frequency data. Second, a Delta-difference Huffman method is combined with the TSSC algorithm to compress the UHD phase angle data. Finally, a cyclical high-order delta modulation method is proposed to compress the UHD POW data. The proposed models are extensively tested and compared with different existing lossless compression algorithms using the field-collected synchrophasor and POW data at different reporting rates. The results indicate that the proposed algorithms are efficient in performing lossless compression for the UHD synchrophasor and POW data in real time.
Mass spectrometry imaging (MSI) enables researchers to directly probe endogenous molecules directly within the architecture of the biological matrix. Unfortunately, efficient access, management, and analysis of the data generated by MSI approaches remain major challenges to this rapidly developing field. Despite the availability of numerous dedicated file formats and software packages, it is a widely held viewpoint that the biggest challenge is simply opening, sharing, and analyzing a file without loss of information. Here we present OpenMSI, a software framework and platform that addresses these challenges via an advanced, high-performance, extensible file format and Web API for remote data access (http://openmsi.nersc.gov). The OpenMSI file format supports storage of raw MSI data, metadata, and derived analyses in a single, self-describing format based on HDF5 and is supported by a large range of analysis software (e.g., Matlab and R) and programming languages (e.g., C++, Fortran, and Python). Careful optimization of the storage layout of MSI data sets using chunking, compression, and data replication accelerates common, selective data access operations while minimizing data storage requirements and are critical enablers of rapid data I/O. The OpenMSI file format has shown to provide >2000-fold improvement for image access operations, enabling spectrum and image retrieval in less than 0.3 s across the Internet even for 50 GB MSI data sets. To make remote high-performance compute resources accessible for analysis and to facilitate data sharing and collaboration, we describe an easy-to-use yet powerful Web API, enabling fast and convenient access to MSI data, metadata, and derived analysis results stored remotely to facilitate high-performance data analysis and enable implementation of Web based data sharing, visualization, and analysis.
The National Space Transportation System (NSTS) is comprised of many diverse and highly complex systems incorporating the latest technologies. Data collection associated with ground processing of the various Space Shuttle system elements is extremely challenging due to the many separate processing locations where data is generated. This presents a significant problem when the timely collection, transfer, collation, and storage of data is required. This paper describes how new technology, referred to as Pen-Based computers, is being used to transform the data collection process at Kennedy Space Center (KSC). Pen-Based computers have streamlined procedures, increased data accuracy, and now provide more complete information than previous methods. The end results is the elimination of Shuttle processing delays associated with data deficiencies.
The Upper Atmosphere Research Satellite (UARS) was launched in September 1991 by the Space Shuttle Discovery. Seven of the original ten instruments aboard the UARS are functional and six instruments regularly take measurements. The UARS is in a stable observing configuration, in spite of experiencing several anomalies which have impacted the data tape storage and power available. Power sharing and "real-time" operations using the Tracking and Data Relay Satellites have reduced the data collection over the past five years. Although the UARS measurements have not been continuous, the UARS instruments HALOE, SUSIM, SOLSTICE, HRDI, WINDII, and PEM have provided important observations over an entire solar cycle. The UARS HALOE instrument measures ozone and other constituents important in understanding ozone variations. The UARS SUSIM and SOLSTICE instruments observe ultraviolet light between 120 and 420 nm, which influence middle atmospheric constituent fluctuations. The UARS HRDI and WINDII instruments measure winds in the stratosphere, mesosphere, and thermosphere, which move constituents among the various atmospheric regions. The UARS PEM instrument provides observations of input precipitating charged particles, including both electrons and protons. This paper will provide an overview about the UARS mission and its relevant atmospheric measurements.
A chlorophyll fluorescence measuring system having at least one spectrometer coupled to a data logger. The data logger provides direct control of the spectrometer and includes on-board memory for storage of target and reference spectrum data obtained by the spectrometer. The data logger may be coupled to an external computer that receives and analyzes target and reference spectrum data to determine SIF using a spectral fitting algorithm. The system may include a spectrometer aiming system coupled to and controlled by the data logger. The system may also include one or more environmental sensors configured to measure environment variables. The environmental sensors may be coupled to the data logger for control and data storage. The environmental data may be communicated to the external computer for use in the spectral fitting algorithm. The data logger may be connected to a network for remote monitoring and control.
As part of continuing efforts to develop support, understanding, and infrastructure of data center integration onto the electric grid, our work aims to model and analyze the behavior of data center loads in a microgrid power system. Our model consists of renewable energy sources, batteries, and a nuclear reactor-steam Rankine cycle to power data center loads. The simulation studies investigate the electrical behavior of the microgrid system to assess its ability in supporting large data center electrical demands.
The ATLAS experiment at CERN's LHC stores detector and simulation data in raw and derived data formats across more than 150 Grid sites world-wide, currently in total about 200PB on disk and 250PB on tape. Data have different access characteristics due to various computational workflows, and can be accessed from different media, such as remote I/O, disk cache on hard disk drives or SSDs. Also, larger data centers provide the majority of offline storage capability via tape systems. For the High-Luminosity LHC (HL-LHC), the estimated data storage requirements are several factors bigger than the present forecast of available resources, based on a flat budget assumption. On the computing side, ATLAS Distributed Computing was very successful in the last years with high performance and high throughput computing integration and in using opportunistic computing resources for the Monte Carlo simulation. On the other hand, equivalent opportunistic storage does not exist. ATLAS started the "Data Carousel" project to increase the usage of less expensive storage, i.e. tapes or even commercial storage, so it is not limited to tape technologies exclusively. Data Carousel orchestrates data processing between workload management, data management, and storage services with the bulk data resident on offline storage. The processing is executed by staging and promptly processing a sliding window of inputs onto faster buffer storage, such that only a small percentage of input data are available at any one time. With this project, we aim to demonstrate that this is the natural way to dramatically reduce our storage cost. The first phase of the project was started in the fall of 2018 and was related to I/O tests of the sites archiving systems. Phase II now requires a tight integration of the workload and data management systems. Additionally, the Data Carousel studies the feasibility to run multiple computing workflows from tape. The project is progressing very well and the results presented in this document will be used before the LHC Run 3.