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At least 1,369 records · Page 76

Time-resolved atomic-resolution Brownian tomography of single nanocrystals reveals size-dependent dynamics

Atomic-resolution structure identification of nanocrystals by graphene liquid cell electron microscopy (GLC-EM) has revealed that small, solubilized platinum nanocrystals consist of an ordered crystalline core surrounded by mobile surface atoms, which dissociate during oxidative etching, resulting in distinct temporal structural states. Requirements imposed by the 3D reconstruction algorithm limit the number of structural states that can be resolved. We introduce a regularized 3D reconstruction algorithm that exploits the redundancy inherent in the experimental data, allowing us to improve the time resolution. Our developments provide a comprehensive molecular picture at unprecedented spatial and temporal resolution of the nonlinear, linear, and fluctuating dynamic phenomena that single nanocrystals undergo during the GLC-EM experiment. We determined atomic structures of 66 temporal structural states, extracted from 15 time trajectories of individual nanocrystals. Large (478 to 698 atoms) and small (<300 atoms) nanocrystals show etching that preserves a stable core, whereas mid-sized (351 to 571 atoms) nanocrystals present dynamics that change the coordination of the core.

Meana-Pañeda, Rubén↗

Determination of jet calibration and energy resolution in proton–proton collisions at $\sqrt{s} = 8~\hbox {TeV}$ using the ATLAS detector

The jet energy scale, jet energy resolution, and their systematic uncertainties are measured for jets reconstructed with the ATLAS detector in 2012 using proton–proton data produced at a centre-of-mass energy of 8 TeV with an integrated luminosity of 20fb -1 . Jets are reconstructed from clusters of energy depositions in the ATLAS calorimeters using the anti-k t algorithm. A jet calibration scheme is applied in multiple steps, each addressing specific effects including mitigation of contributions from additional proton–proton collisions, loss of energy in dead material, calorimeter non-compensation, angular biases and other global jet effects. The final calibration step uses several in situ techniques and corrects for residual effects not captured by the initial calibration. Furthermore, these analyses measure both the jet energy scale and resolution by exploiting the transverse momentum balance in γ + jet, Z + jet, dijet, and multijet events. A statistical combination of these measurements is performed. In the central detector region, the derived calibration has a precision better than 1% for jets with transverse momentum 150 GeV < p T < 1500 GeV, and the relative energy resolution is (8.4 ± 0.6)% for p T =100 GeV and (23 ± 2)% for p T =20 GeV. The calibration scheme for jets with radius parameter R = 1.0, for which jets receive a dedicated calibration of the jet mass, is also discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

On resolutions of cosmological singularities in higher-spin gravity

We study the resolution of certain cosmological singularity in the context of higher-spin three-dimensional gravity. We consider gravity coupled to a spin-3 field realized as Chern–Simons theory with gauge group [Formula: see text]. In this context, we elaborate and extend a singularity resolution scheme proposed by Krishnan and Roy. We discuss the resolution of a big bang singularity in the case of gravity coupled to a spin-4 field realized as Chern–Simons theory with gauge group [Formula: see text]. In all these cases, we show the existence of gauge transformations that do not change the holonomy of the Chern–Simons gauge potential and lead to metrics without the initial singularity. We argue that such transformations always exist in the context of gravity coupled to a spin-[Formula: see text] field when described by Chern–Simons with gauge group [Formula: see text].

Astronomy & Astrophysics↗

Shallow Cumulus Properties as Captured by Adiabatic Fraction in High-Resolution LES Simulations

Abstract Shallow convective clouds are important players in Earth’s energy budget and hydrological cycle, and are abundant in the tropical and subtropical belts. They greatly contribute to the uncertainty in climate predictions due to their unresolved, complex processes that include coupling between the dynamics and microphysics. Analysis of cloud structure can be simplified by considering cloud motions as a combination of moist adiabatic motions like adiabatic updrafts and turbulent motions leading to deviation from adiabaticity. In this work, we study the sizes and occurrence of adiabatic regions in shallow cumulus clouds during their growth and mature stages, and use the adiabatic fraction (AF) as a continuous metric to describe cloud processes and properties from the core to the edge. To do so, we simulate isolated trade wind cumulus clouds of different sizes using the System of Atmospheric Modeling (SAM) model in high resolution (10 m) with the Hebrew University spectral bin microphysics (SBM). The fine features in the clouds’ dynamics and microphysics, including small near-adiabatic volumes and a thin transition zone at the edge of the cloud (∼20–40 m in width), are captured. The AF is shown to be an efficient measure for analyzing cloud properties and key processes determining the droplet-size distribution formation and shape during the cloud evolution. Physical processes governing the properties of droplet size distributions at different cloud regions (e.g., core, edge) are analyzed in relation to AF. Significance Statement 1) This study investigates the evolution of cumulus clouds (Cu) using a 10-m-resolution LES model with spectral bin microphysics. 2) The study improves the understanding of the mutual effects of adiabatic updrafts and lateral entrainment and mixing. 3) The study demonstrates the existence of an adiabatic core in nonprecipitating Cu. 4) Shapes of the droplet size distributions are closely related to the adiabatic fraction values. 5) Utilization of high resolution reveals the existence of physically significant small features in the cloud structure, such as a narrow cloud interface zone and small adiabatic volumes.

54 ENVIRONMENTAL SCIENCES↗

Dynamic Subgrid Turbulence Modeling for Shallow Cumulus Convection Simulations beyond LES Resolutions

A scale-dependent dynamic Smagorinsky model is implemented in the Met Office/NERC Cloud (MONC) model using two averaging flavors, along Lagrangian pathlines and local moving averages. The dynamic approaches were compared against the conventional Smagorinsky–Lilly scheme in simulating the diurnal cycle of shallow cumulus convection. The simulations spanned from the LES to the near-gray-zone and gray-zone resolutions and revealed the adaptability of the dynamic model across the scales and different stability regimes. The dynamic model can produce a scale- and stability-dependent profile of the subfilter turbulence length scale across the chosen resolution range. At gray-zone resolutions the adaptive length scales can better represent the early precloud boundary layer leading to temperature and moisture profiles closer to the LES compared to the standard Smagorinsky. As a result, the initialization and general representation of the cloud field in the dynamic model is in good agreement with the LES. In contrast, the standard Smagorinsky produces a less well-mixed boundary layer, which fails to ventilate moisture from the boundary layer, resulting in the delayed spinup of the cloud layer. Moreover, strong downgradient diffusion controls the turbulent transport of scalars in the cloud layer. However, the dynamic approaches rely on the resolved field to account for nonlocal transports, leading to overenergetic structures when the boundary layer is fully developed and the Lagrangian model is used. Introducing the local averaging version of the model or adopting a new Lagrangian time scale provides stronger dissipation without significantly affecting model behavior.

54 ENVIRONMENTAL SCIENCES↗

Resolution Dependence of Future Tropical Cyclone Projections of CAM5.1 in the U.S. CLIVAR Hurricane Working Group Idealized Configurations

The four idealized configurations of the U.S. CLIVAR Hurricane Working Group are integrated using the global Community Atmospheric Model version 5.1 at two different horizontal resolutions, approximately 100 and 25 km. The publicly released 0.9° × 1.3° configuration is a poor predictor of the sign of the 0.23° × 0.31° model configuration’s change in the total number of tropical storms in a warmer climate. However, it does predict the sign of the higher-resolution configuration’s change in the number of intense tropical cyclones in a warmer climate. In the 0.23° × 0.31° model configuration, both increased CO 2 concentrations and elevated sea surface temperature (SST) independently lower the number of weak tropical storms and shorten their average duration. Conversely, increased SST causes more intense tropical cyclones and lengthens their average duration, resulting in a greater number of intense tropical cyclone days globally. Increased SST also increased maximum tropical storm instantaneous precipitation rates across all storm intensities. It was found that while a measure of maximum potential intensity based on climatological mean quantities adequately predicts the 0.23° × 0.31° model’s forced response in its most intense simulated tropical cyclones, a related measure of cyclogenesis potential fails to predict the model’s actual cyclogenesis response to warmer SSTs. These analyses lead to two broader conclusions: 1) Projections of future tropical storm activity obtained by a direct tracking of tropical storms simulated by coarse-resolution climate models must be interpreted with caution. 2) Projections of future tropical cyclogenesis obtained from metrics of model behavior that are based solely on changes in long-term climatological fields and tuned to historical records must also be interpreted with caution.

54 ENVIRONMENTAL SCIENCES↗

Quantifying the Impact of Vertical Resolution on the Representation of Marine Boundary Layer Physics for Global-Scale Models

Abstract While GCM horizontal resolution has received the majority of scale improvements in recent years, ample evidence suggests that a model’s vertical resolution exerts a strong control on its ability to accurately simulate the physics of the marine boundary layer. Here we show that, regardless of parameter tuning, the ability of a single-column model (SCM) to simulate the subtropical marine boundary layer improves when its vertical resolution is improved. We introduce a novel objective tuning technique to optimize the parameters of an SCM against profiles of temperature and moisture and their turbulent fluxes, horizontal winds, cloud water, and rainwater from large-eddy simulations (LES). We use this method to identify optimal parameters for simulating marine stratocumulus and shallow cumulus. The novel tuning method utilizes an objective performance metric that accounts for the uncertainty in the LES output, including the covariability between model variables. Optimization is performed independently for different vertical grid spacings and value of time step, ranging from coarse scales often used in current global models (120 m, 180 s) to fine scales often used in parameterization development and large-eddy simulations (10 m, 15 s). Uncertainty-weighted disagreement between the SCM and LES decreases by a factor of ∼5 when vertical grid spacing is improved from 120 to 10 m, with time step reductions being of secondary importance. Model performance is shown to converge at a vertical grid spacing of 20 m, with further refinements to 10 m leading to little further improvement. Significance Statement In successive generations of computer models that simulate Earth’s atmosphere, improvements have been mainly accomplished by reducing the horizontal sizes of discretized grid boxes, while the vertical grid spacing has seen comparatively lesser refinements. Here we advocate for additional attention to be paid to the number of vertical layers in these models, especially in the model layers closest to Earth’s surface where climatologically important marine stratocumulus and shallow cumulus clouds reside. Our experiments show that the ability of a one-dimensional model to represent physical processes important to these clouds is strongly dependent on the model’s vertical grid spacing.

Meteorology & Atmospheric Sciences↗

Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF’s summit supercomputer

Clouds represent a key uncertainty in future climate projection. While explicit cloud resolution remains beyond our computational grasp for global climate, we can incorporate important cloud effects through a computational middle ground called the Multi-scale Modeling Framework (MMF), also known as Super Parameterization. This algorithmic approach embeds high-resolution Cloud Resolving Models (CRMs) to represent moist convective processes within each grid column in a Global Climate Model (GCM). The MMF code requires no parallel data transfers and provides a self-contained target for acceleration. This study investigates the performance of the Energy Exascale Earth System Model-MMF (E3SM-MMF) code on the OLCF Summit supercomputer at an unprecedented scale of simulation. Hundreds of kernels in the roughly 10K lines of code in the E3SM-MMF CRM were ported to GPUs with OpenACC directives. A high-resolution benchmark using 4600 nodes on Summit demonstrates the computational capability of the GPU-enabled E3SM-MMF code in a full physics climate simulation.

58 GEOSCIENCES↗

Spectroscopic setup for submicrometer-resolution mapping of low-signal absorption and luminescence using photothermal heterodyne imaging and photon-counting techniques

A spectroscopic setup that enables one to map the absorption and photoluminescence with submicrometer spatial resolution and high sensitivity is described. Here a photothermal heterodyne imaging pump/probe technique is employed for absorption mapping, and low-signal, spatially resolved photoluminescence is recorded using photon counting. High-spatial-resolution mapping is accomplished by using high-numerical-aperture microscope objective focusing laser beams (pump and probe) into a submicrometer spot and raster-scanning sample mounted on the nanopositioning translation stage. Performance of the setup is illustrated by mapping absorption and luminescence of the hafnium oxide film with embedded hafnium nanoparticles and multilayer dielectric grating. In both cases submicrometer spatial resolution is demonstrated and possible physical mechanisms leading to image contrast on a submicrometer scale is discussed

47 OTHER INSTRUMENTATION↗

Programmable, direct space-to-time picosecond resolution pulse shaper with nanosecond record

In this work, we demonstrate a novel, to the best of our knowledge, extension of optical arbitrary waveform generation capable of picosecond resolution over nanosecond duration. The method, called space–time induced linearly encoded transcription for temporal optimization, is based on direct space-to-time pulse shaping and is extended here to single-mode output with a programmable temporal profile. We develop the theory of operation and discuss ultimate limits on resolution, record length, and efficiency. We report on the results of an experimental demonstration showing ~1ps resolution over 600 ps.

42 ENGINEERING↗

Improved high-resolution mapping of phase-matching conditions in second-order nonlinear crystals via imaging

Large-aperture nonlinear crystals for frequency conversion and parametric amplification exhibit spatial variations in phase-matching conditions, which affect the performance of high-power laser systems. We demonstrate significant improvements in speed and resolution to a technique that spatially maps these phase-matching conditions using imaging of the beam resulting from detuned second-harmonic generation. The phase-matching conditions at the pyramidal sector boundary of partially deuterated potassium dihydrogen phosphate (DKDP) are mapped with sub-0.1-mm resolution. We examine the effect of further increases in scan rate on the precision of the technique and demonstrate a scan rate of 0.8 cm 2 per minute at the aforementioned resolution.

Wampler, R. [Univ. of Rochester, NY (United States↗

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein

Molecular Dynamics (MD) simulations seek to provide atomic-level insights into conformationally dynamic biological systems at experimentally relevant time resolutions, such as those afforded by single-molecule fluorescence measurements. However, limitations in the time scales of MD simulations and the time resolution of single-molecule measurements have challenged efforts to obtain overlapping temporal regimes required for close quantitative comparisons. Achieving such overlap has the potential to provide novel theories, hypotheses, and interpretations that can inform idealized experimental designs that maximize the detection of the desired reaction coordinate. Here, we report MD simulations at time scales overlapping with in vitro single-molecule Förster (fluorescence) resonance energy transfer (smFRET) measurements of the amino acid binding protein LIV-BP SS at sub-millisecond resolution. Computationally efficient all-atom structure-based simulations, calibrated against explicit solvent simulations, were employed for sampling multiple cycles of LIV-BP SS clamshell-like conformational changes on the time scale of seconds, examining the relationship between these events and those observed by smFRET. The MD simulations agree with the smFRET measurements and provide valuable information on local dynamics of fluorophores at their sites of attachment on LIV-BP SS and the correlations between fluorophore motions and large-scale conformational changes between LIV-BP SS domains. We further utilize the MD simulations to inform the interpretation of smFRET data, including Förster radius (R 0 ) and fluorophore orientation factor (κ 2 ) determinations. The approach we describe can be readily extended to distinct biochemical systems, allowing for the interpretation of any FRET system conjugated to protein or ribonucleoprotein complexes, including those with more conformational processes, as well as those implementing multi-color smFRET.

59 BASIC BIOLOGICAL SCIENCES↗

Detection of local-scale changes in greenhouse gas emissions in urban environments using micrometeorological methods and comparison to a high-resolution inventory

We used the Monin–Obukhov similarity theory (MOST) flux-variance relationship to estimate greenhouse gas (GHG) fluxes from high-precision mole fraction measurements at 3 instrumented urban communication towers over several years, demonstrating the ability of this method to detect and quantify changes in emissions. Depending on data availability, we used carbon dioxide (CO 2 ) and carbon monoxide (CO) measurements and/or tracer ratios to estimate fluxes at 1 urban site (Site 3) and 1 suburban site (Site 7) in Indianapolis, IN, USA, and 1 urban site (COM) in Los Angeles, CA, USA. We also compared the estimated fluxes of CO 2 from fossil fuel sources (CO 2 ff) at Sites 3 and 7 and the total CO 2 fluxes at Site 3 to 20 m, hourly resolution subdomains of the high-resolution CO 2 emissions inventory, Hestia, for the year 2020, introducing a new way to evaluate emissions inventories at small spatial and temporal scales. Using the flux-variance relationship, we detected and quantified abrupt decreases in CO and CO 2 fluxes at Site 3 and COM in April 2020, coinciding with the stay-at-home order due to COVID-19 pandemic, as well as abrupt decreases in CO and CO 2 fluxes at Site 3 in July 2018 coinciding with a highway closure next to the site. The Hestia emissions inventory detected a decrease in emissions in April 2020 at Sites 3 and 7, but this decrease differed in magnitude from those detected in the atmospheric estimates. Seasonal trends in emissions are similar between Hestia and the atmospheric estimates at Site 7. We use differences in seasonal and spatial trends between the flux estimation methods to identify potential sources of uncertainty in both the atmospheric and inventory methods. The results from this study show that the flux-variance estimation method is a useful tool to monitor local-scale emissions and evaluate high-resolution emissions inventories.

Carbon dioxide↗

New materials for high-energy-resolution x-ray optics

The use of crystals other than silicon for x-ray optics is becoming more common for many challenging experiments such as resonant inelastic x-ray scattering and nuclear resonant scattering. As more—and more specialized—spectrometers become available at many synchrotron radiation facilities, interest in pushing the limits of experimental energy resolution has increased. The potentially large improvements in resolution and efficiency that nonsilicon optics offer are beginning to be realized. Furthermore, this article covers the background and state of the art for nonsilicon crystal optics with a focus on a resolution of 10 meV or better, concentrating on compounds that form trigonal crystals, including sapphire, quartz, and lithium niobate, rather than the more conventional cubic materials, including silicon, diamond, and germanium.

36 MATERIALS SCIENCE↗

Effects of hydro mesh resolution on Detonation Shock Dynamics (DSD)

Detonation Shock Dynamics (DSD) is a programmed-burn scheme that calculates the propagation of the detonation front in the HE before a full hydro computation begins. DSD calculations are performed on a uniform Cartesian grid which is independent from the hydro mesh, and its burntime calculation algorithm is second-order accurate. However, its boundary condition application is first-order accurate with respect to the grid resolution. The geometry of the HE is represented by two fields in DSD — distance function (Ψ) and material ID (matID). The former is the distance from a given DSD grid point to the nearest HE boundary and the latter is the material identification at that grid point. Those two fields must be determined from the information supplied by the hydro code. Since the hydro mesh resolution is almost always dictated by analysis and computational requirements, DSD must adhere to this restriction. Even though the effects of body-fitted hydro resolution has been briefly documented previously, this report elaborates further and describes its ramifications.

97 MATHEMATICS AND COMPUTING↗

Effect of Resolution on Propagating Detonation Wave

Simulations of the cylinder test are used to illustrate the effect of mesh resolution on a propagating detonation wave. For this study we use the xRage code with the SURF burn model for PBX 9501. The adaptive mesh capability of xRage is used to vary the resolution of the reaction zone. We focus on two key properties: the detonation speed and the cylinder wall velocity. The latter is related to the release isentrope behind the detonation wave. As the reaction zone is refined (2 to 15 cells for cell size of 62 to 8μm), both the detonation speed and final wall velocity change by a small amount; less than 1 per cent. The detonation speed decreases with coarser resolution. Even when the reaction zone is grossly under-resolved (cell size twice the reaction-zone width of the burn model) the wall velocity is within a per cent and the detonation speed is low by only 2 per cent.

97 MATHEMATICS AND COMPUTING↗

Methodology for Clustering High-Resolution Spatiotemporal Solar Resource Data

In this report, we introduce a methodology to achieve multiple levels of spatial resolution reduction of solar resource data, with minimal impact on data variability, for use in energy systems modeling. The selection of an appropriate clustering algorithm, parameter selection including cluster size, methods of temporal data segmentation, and methods of cluster evaluation are explored in the context of a repeatable process. In describing this process, we illustrate the steps in creating a reduced resolution, but still viable, dataset to support energy systems modeling, e.g. capacity expansion or production cost modeling. This process is demonstrated through the use of a solar resource dataset; however, the methods are applicable to other resource data represented through spatiotemporal grids, including wind data. In addition to energy modeling, the techniques demonstrated in this paper can be used in a novel top-down approach to assess renewable resources within many other contexts that leverage variability in resource data but require reduction in spatial resolution to accommodate modeling or computing constraints.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

On Radar Resolution in Coherent Change Detection.

It is commonly observed that resolution plays a role in coherent change detection. Although this is the case, the relationship of the resolution in coherent change detection is not yet defined . In this document, we present an analytical method of evaluating this relationship using detection theory. Specifically we examine the effect of resolution on receiver operating characteristic curves for coherent change detection.

47 OTHER INSTRUMENTATION↗