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At least 1,369 records · Page 76

Visualizing Hierarchical Performance Profiles of Parallel Codes Using CallFlow

Calling context trees (CCTs) couple performance metrics with call paths, helping understand the execution and performance of parallel programs. To identify performance bottlenecks, programmers and performance analysts visually explore CCTs to form and validate hypotheses regarding degraded performance. However, due to the complexity of parallel programs, existing visual representations do not scale to applications running on a large number of processors. In this work, we present CallFlow, an interactive visual analysis tool that provides a high-level overview of CCTs together with semantic refinement operations to progressively explore CCTs. Using a flow-based metaphor, we visualize a CCT by treating execution time as a resource spent during the call chain, and demonstrate the effectiveness of our design with case studies on large-scale, production simulation codes.

97 MATHEMATICS AND COMPUTING↗

Detecting Hardware Trojans in PCBs Using Side Channel Loopbacks

Malicious modifications to printed circuit boards (PCBs) are known as hardware Trojans. These may arise when malafide third parties alter PCBs premanufacturing or postmanufacturing and are a concern in safety-critical applications, such as industrial control systems. In this research, we examine how data-driven detection can be utilized to detect such Trojans at run-time. We develop a flexible and reconfigurable PCB test bed derived from the popular open-source programmable logic controller (PLC) platform “OpenPLC.” We then develop a Trojan detection framework, which utilizes and analyzes multimodal side channels (e.g., timing, magnetic signals, power, and hardware performance counters). We consider defender-configurable input/output (I/O) loopback test, comparison with design-document baselines, and magnetometer-aided monitoring of system behavior under defender-chosen excitations. Our approach can extend to golden-free environments. Golden (known-good) versions of the PCBs are assumed not available, but design information, datasheets, and component-level data are available. We demonstrate the efficacy of our approach on a range of Trojans instantiated in the test bed.

42 ENGINEERING↗

Ecological acclimation: A framework to integrate fast and slow responses to climate change

Ecological responses to climate change occur across vastly different time-scales, from minutes for physiological plasticity to decades or centuries for community turnover and evolutionary adaptation. Accurately predicting the range of ecosystem trajectories will require models that incorporate both fast processes that may keep pace with climate change and slower ones likely to lag behind and generate disequilibrium dynamics. However, the knowledge necessary for this integration is currently fragmented across disciplines. We develop ‘ecological acclimation’ as a unifying framework to emphasize the similarity of dynamics driven by processes operating on dramatically different time-scales and levels of biological organization. The framework focuses on ecoclimate sensitivities, measured as the change in an ecological response variable per unit of climate change. Acclimation processes acting at different time-scales cause these sensitivities to shift in magnitude and even direction over time. We highlight shifting ecoclimate sensitivities in case studies from diverse ecosystems, including terrestrial plant communities, coral reefs and soil microbiomes. Models predicting future ecosystem states inevitably make assumptions about acclimation processes; these assumptions must be explicit for users to evaluate whether a model is appropriate for a given forecast horizon. Similarly, decision frameworks that clearly account for multiple acclimation processes and their distinct time-scales will help natural resource managers plan for ecological impacts of climate change from years to many decades into the future. We outline a synthetic research programme focused on the time-scales of ecological acclimation to reduce uncertainty in ecological forecasts.

climate adaptation↗

Cost‐effective monitoring of biological invasions under global change: a model‐based framework

Summary Ecological monitoring programmes are designed to detect and measure changes in biodiversity and ecosystems. In the case of biological invasions, they can contribute to anticipating risks and adaptively managing invaders. However, monitoring is often expensive because large amounts of data might be needed to draw inferences. Thus, careful planning is required to ensure that monitoring goals are realistically achieved. Species distribution models ( SDM s) can provide estimates of suitable areas to invasion. Predictions from these models can be applied as inputs in optimization strategies seeking to identify the optimal extent of the networks of areas required for monitoring risk of invasion under current and future environmental conditions. A hierarchical framework is proposed herein that combines SDM s, scenario analysis and cost analyses to improve invasion assessments at regional and local scales. We illustrate the framework with Acacia dealbata Link. (Silver‐wattle) in northern Portugal. The framework is general and applicable to any species. We defined two types of monitoring networks focusing either on the regional‐scale management of an invasion, or management focus within and around protected areas. For each one of these two schemes, we designed a hierarchical framework of spatial prioritization using different information layers (e.g. SDM s, habitat connectivity, protected areas). We compared the performance of each monitoring scheme against 100 randomly generated models. In our case study, we found that protected areas will be increasingly exposed to invasion by A. dealbata due to climate change. Moreover, connectivity between suitable areas for A. dealbata is predicted to increase. Monitoring networks that we identify were more effective in detecting new invasions and less costly to management than randomly generated models. The most cost‐efficient monitoring schemes require 18% less effort than the average networks across all of the 100 tested options. Synthesis and applications . The proposed framework achieves cost‐effective monitoring networks, enabling the interactive exploration of different solutions and the combination of quantitative information on network performance with orientations that are rarely incorporated in a decision support system. The framework brings invasion monitoring closer to European legislation and management needs while ensuring adaptability under rapid climate and environmental change.

Vicente, Joana R.↗

Dispersal behaviour of Euwallacea nr. fornicatus (Coleoptera: Curculionidae: Scolytinae) in avocado groves and estimation of lure sampling range

Abstract Invasive ambrosia beetles in the Euwallacea nr. fornicatus species complex (Coleoptera: Curculionidae: Scolytinae) threaten avocado production in multiple countries. These pests are currently monitored with lures containing quercivorol; α‐copaene was also recently discovered to be an effective attractant. We investigated dispersal behaviour of female E . nr . fornicatus in two Florida avocado groves using mark–release–recapture experiments and laboratory flight mills. Additionally, we estimated the sampling range of quercivorol and α‐copaene lures deployed alone and in tandem. The two‐component lure recaptured 31.2% of marked beetles, which was significantly more than quercivorol (11.2%) or α‐copaene (8.8%) alone. Contour analysis indicated that wind speed and direction can influence the number of females that disperse, as well as the direction and distance of their flight. Two methods were used to estimate sampling range and both of them indicated comparable effective ranges for the three lure treatments, with 80% of marked beetles being recaptured within 30–35 m of the release point. Average total flight distance in laboratory tests was 81.0 m in 24 h, with a maximum distance recorded at 400 m. The combination of quercivorol and α‐copaene lures provides the best detection of pest E . nr. fornicatus in Florida, with a recommended trap spacing of approximately 30 m in surveillance programmes for this pest in avocado groves.

Owens, David↗

Combining landscape suitability and habitat connectivity to conserve the last surviving population of cheetah in Asia

Abstract Aim The Asiatic cheetah, Acinonyx jubatus venaticus , a critically endangered large felid, has disappeared from vast tracks of its historical range across south‐western Asia. It is currently confined to the arid ecosystems of central Iran for which little is known about its distribution and habitat linkages. We proposed the first evaluation of Asiatic cheetah's distribution and developed models of landscape suitability and connectivity to inform future conservation planning. Location Central Iran. Methods We analysed presence data of a 14‐year‐long cheetah monitoring programme according to environmental and anthropogenic factors, and generated an ensemble model of habitat suitability based on seven species distribution models ( SDM s). We then used the concept of circuit theory and landscape connectivity prioritization ( LCP ) on resultant core habitats and landscape suitability to evaluate potential linkages between core areas. Results Core habitats, that is, the areas hosting the largest continuous suitable habitats for Asiatic cheetahs, covered approximately 49,144 km 2 ( c . 6.3% of the study area). Availability of prey species, avoidance of human‐dominated areas and their infrastructures, and rough landscapes covered with sparse vegetation were the most predictive factors of the core habitats for the last cheetah population in Asia. Although relatively vast, the area of potential core habitats available to cheetahs appeared to be fragmented with limited connectivity between the northern and southern parts of this distribution. Main conclusions Our approach highlights the importance of distribution models to recognize, at a coarse‐scale level, a spatial population structure and habitat suitability characteristics for a large carnivore surviving at very low density. We have identified specific areas of suitable habitat where developing new landscape protection and adaptive conservation management; and improving the safety of important linkages between core habitats are likely to promote the conservation of the last surviving population of cheetah in Asia.

Ahmadi, Mohsen↗

Contrasting student and staff perceptions of preclinical‐to‐clinical transition at a Chilean dental school

Abstract Introduction Dental education is a challenging and demanding field of study as students are expected to acquire various competencies to fulfil their professional requirements after graduation. The objective of this study was to investigate and compare dental students' and clinical staff instructors' perceptions of the preclinical‐to‐clinical transition training at a Dental School in Santiago, Chile. Material and Methods Two questionnaires containing 11 quantitative and one qualitative item were developed to assess our year three, four and five ( n = 244) dental undergraduate students' challenges when they begin treating patients, and clinical staff ( n = 78) perceptions of the preparedness to treat patients of the same students. Both questionnaires were voluntarily and anonymously implemented eight weeks after the beginning of the 2019 academic year. Responses were analysed using a Chi‐squared test for each quantitative question, while qualitative comments were studied to form themes and dimensions. RESULTS A total of 234 (96%) students and 60 (77%) instructors completed their respective questionnaire. There were considerable variations between students in the different years of the programme, as well as between students and staff members. Students and instructors felt the former had enough knowledge to treat patients though it was difficult for them to apply it in clinical practice. Again, both believed they could communicate with patients, but third year students asked for more training on this. Regarding practical skills, fourth‐ and fifth‐year students felt prepared but not third year students, who preferred to work in pairs with senior students, a preference that was shared by the instructors. All student groups asked clinical staff to provide more frequent, constructive and consistent feedback and felt that the difference between simulation and clinical environments and the amount of clinical work to fulfil clinical requirements made them feel stressed. Another mentioned stressor was students' low self‐confidence when working with patients. Among the requested improvements, students requested better training on how the dental clinic works to save time. Conclusions Preclinical‐to‐clinical transition training presents several challenges. Some of the problems highlighted by both students and clinical staff members persisted with the transition after three, four and even five years of training, which needs to be addressed.

Tricio, Jorge↗

Global change pressures on soils from land use and management

Abstract Soils are subject to varying degrees of direct or indirect human disturbance, constituting a major global change driver. Factoring out natural from direct and indirect human influence is not always straightforward, but some human activities have clear impacts. These include land‐use change, land management and land degradation (erosion, compaction, sealing and salinization). The intensity of land use also exerts a great impact on soils, and soils are also subject to indirect impacts arising from human activity, such as acid deposition (sulphur and nitrogen) and heavy metal pollution. In this critical review, we report the state‐of‐the‐art understanding of these global change pressures on soils, identify knowledge gaps and research challenges and highlight actions and policies to minimize adverse environmental impacts arising from these global change drivers. Soils are central to considerations of what constitutes sustainable intensification. Therefore, ensuring that vulnerable and high environmental value soils are considered when protecting important habitats and ecosystems, will help to reduce the pressure on land from global change drivers. To ensure that soils are protected as part of wider environmental efforts, a global soil resilience programme should be considered, to monitor, recover or sustain soil fertility and function, and to enhance the ecosystem services provided by soils. Soils cannot, and should not, be considered in isolation of the ecosystems that they underpin and vice versa. The role of soils in supporting ecosystems and natural capital needs greater recognition. The lasting legacy of the International Year of Soils in 2015 should be to put soils at the centre of policy supporting environmental protection and sustainable development.

Smith, Pete↗

Tallo: A global tree allometry and crown architecture database

Abstract Data capturing multiple axes of tree size and shape, such as a tree's stem diameter, height and crown size, underpin a wide range of ecological research—from developing and testing theory on forest structure and dynamics, to estimating forest carbon stocks and their uncertainties, and integrating remote sensing imagery into forest monitoring programmes. However, these data can be surprisingly hard to come by, particularly for certain regions of the world and for specific taxonomic groups, posing a real barrier to progress in these fields. To overcome this challenge, we developed the Tallo database, a collection of 498,838 georeferenced and taxonomically standardized records of individual trees for which stem diameter, height and/or crown radius have been measured. These data were collected at 61,856 globally distributed sites, spanning all major forested and non‐forested biomes. The majority of trees in the database are identified to species (88%), and collectively Tallo includes data for 5163 species distributed across 1453 genera and 187 plant families. The database is publicly archived under a CC‐BY 4.0 licence and can be access from: https://doi.org/10.5281/zenodo.6637599 . To demonstrate its value, here we present three case studies that highlight how the Tallo database can be used to address a range of theoretical and applied questions in ecology—from testing the predictions of metabolic scaling theory, to exploring the limits of tree allometric plasticity along environmental gradients and modelling global variation in maximum attainable tree height. In doing so, we provide a key resource for field ecologists, remote sensing researchers and the modelling community working together to better understand the role that trees play in regulating the terrestrial carbon cycle.

Jucker, Tommaso↗

Radiation capture and conversion efficiencies of Miscanthus sacchariflorus , M. sinensis and their naturally occurring hybrid M . × giganteus

Abstract Miscanthus is a rhizomatous C4 grass of great interest as a biofuel crop because it has the potential to produce high yields over a wide geographical area with low agricultural inputs on marginal land less suitable for food production. At the moment, a clonal interspecific hybrid Miscanthus × giganteus is the most widely cultivated and studied in Europe and the United States, but breeding programmes are developing newer more productive varieties. Here, we quantified the physiological processes relating to whole season yield in a replicated plot trial in Wales, UK . Light capture and conversion efficiency were parameterized for four carefully selected genotypes ( M. sinensis , M. sacchariflorus and Miscanthus × giganteus ). Differences in the canopy architecture in mature stands as measured by the extinction coefficient ( k ) were small (0.55–0.65). Sensitivity analysis on a mathematical model of Miscanthus was performed to quantify the accumulative intercepted photosynthetically active radiation ( iPAR ) in the growing season using (i) k, (ii) variation in the thermal responses of leaf expansion rate, (iii) base temperature for degree days and (iv) date start of canopy expansion. A 10% increase in k or leaf area per degree day both had a minimal effect on iPAR (3%). Decreasing base temperature from 10 to 9 °C gave an 8% increase in iPAR . If the starting date for canopy expansion was the same as shoot emergence date, then the iPAR increases by 12.5%. In M . × giganteus, the whole season above ground and total (including below ground) radiation‐use efficiency ( RUE ) ranged from 45% to 37% higher than the noninterspecific hybrid genotypes. The greater yields in the interspecific hybrid M. × giganteus are explained by the higher RUE and not by differences in iPAR or partitioning effects. Studying the mechanisms underlying this complex trait could have wide benefits for both fuel and food production.

Davey, Christopher Lyndon↗

Influence of the loading system on mode I delamination results in Carbon-Epoxy composites

In this paper, a modified mechanical grip fitting is used to perform double cantilever beam (DCB) tests. The advantage of using mechanical grips instead of piano hinges or end blocks lies in the fact that the use of adhesive bonding is not required to fix the sample. Adhesive bonding can be an important source of uncertainty and unexpected debondings in fatigue tests. Mechanical fittings are also well suited for high temperature applications where adhesive bonds usually undergo premature failure. An experimental programme has been developed in order to compare the performance of the modified mechanical hinges with classical hinges and end blocks. The highest G{sub Ic} values and scattering were found for the end block system, while hinges and mechanical hinges furnished similar results. The material used to perform the experimental study was a Hexcel AS4/3501-6 unidirectional laminate.

36 MATERIALS SCIENCE↗

The role of ceramic and glass science research in meeting societal challenges: Report from an NSF-sponsored workshop

Under the sponsorship of the U.S. National Science Foundation, a workshop on emerging research opportunities in ceramic and glass science was held in September 2016. Reported here are proceedings of the workshop. The report details eight challenges identified through workshop discussions: Ceramic processing: Programmable design and assembly; The defect genome: Understanding, characterizing, and predicting defects across time and length scales; Functionalizing defects for unprecedented properties; Ceramic flatlands: Defining structure-property relations in free-standing, supported, and confined two-dimensional ceramics; Ceramics in the extreme: Discovery and design strategies; Ceramics in the extreme: Behavior of multimaterial systems; Understanding and exploiting glasses and melts under extreme conditions; and Rational design of functional glasses guided by predictive modeling. It is anticipated that these challenges, once met, will promote basic understanding and ultimately enable advancements within multiple sectors, including energy, environment, manufacturing, security, and health care.

36 MATERIALS SCIENCE↗

Towards engineering hybrid incompatibility in plants

The potential for gene flow between genetically modified organisms (GMOs) and non-GMO relatives poses a significant challenge to the development and regulatory approval of GMO crops (Wedger et al., 2024), for example, the spread of herbicide resistance transgenes from crops such as rice or sorghum to cross-pollinating weedy species. Addressing this concern, we developed Engineered Genetic Incompatibility (EGI) (Maselko et al., 2017), a system that establishes species-like barriers to gene flow between otherwise sexually compatible populations. EGI employs Programmable Transcriptional Activators (PTAs) to drive lethal over- and/or ectopic expression of tightly regulated genes following undesired hybridization events (Figure 1a,b). A benign mutation of the target promoter in the EGI organism protects it from ill effects of the PTA, which acts as a sentinel for the wild-type (WT) promoter sequence. Given numerous potential PTA targets, multiple mutually incompatible subpopulations are feasible (Maselko et al., 2020). EGI has been demonstrated in yeast as a proof-of-concept (Maselko et al., 2017) and in insects as a strategy for genetic biocontrol of pests (Maselko et al., 2020; Upadhyay et al., 2022). EGI in plants would provide a strategy to halt gene flow between engineered crops and their domestic and wild relatives without altering normal cultivation or propagation practices. Here, we present promising results towards the demonstration of EGI in plants and highlight technical challenges that still need to be overcome.

CRISPRa↗

Effects of exogenous GnRH administration on lambing performance of oestrus‐synchronized Kazak ewes during the breeding season

Abstract The objective of this study was to investigate the effects of GnRH at insemination on lambing performance of Kazak ewes. Oestrus was synchronized in 774 adult Kazak ewes using an intravaginal sponge impregnated with flurogestone acetate. The sponge was left in the vagina for 12 days followed with an injection of 330 IU of eCG at sponge removal. Each ewe was inseminated twice at 48 h and 60 h after sponge removal. The treatment group ( n = 387) was intramuscularly injected at the first insemination with a dose of 25 μg GnRH and the control group ( n = 387) with saline solution. The results showed that GnRH administration significantly decreased the fertility rate. In addition, significant differences were observed between the two groups in terms of the twin birth rate, the abortion rate and the litter size. In conclusion, GnRH administration at insemination was not recommended in Kazak ewes undergoing the fixed time artificial insemination during the breeding season. The breed may be a critical determinant of the potential for the exploitation of GnRH application in sheep breeding programmes.

Zhang, Jing↗

Expecting a child: pregnancy in light of an ontological health model

Aim To make visible the existential character of pregnancy by searching for its health dimensions as it is described in the ontological health model. Method Eight women were interviewed two or three times during their pregnancy and one time shortly after birth. The women have taken part in the routine programme that constitutes maternity care in S weden. A hermeneutic approach inspired by G adamer was used to analyse the data. An ontological health model was used to interpret the findings. Findings Nine themes on a rational and a contextual level were clustered to three themes on an existential level: A new life stage, The new life takes shape and Health is jeopardised. Contents of these themes were interpreted together with an ontological health model. Expecting a child means to do, be and become in expectation of the new life. Suffering and health are two different dimensions in a woman's life during pregnancy; they are integrated with one another and ever‐present. It is in the meeting with the inevitable, life‐changing gravidity and vulnerability that the integrative movement creates the new. Longing is the desire that provides motivation to continue.

Larsson, Åsa↗

A genetic link between leaf carbon isotope composition and whole-plant water use efficiency in the C 4 grass Setaria

Genetic selection for whole-plant water use efficiency (yield per transpiration; WUE plant ) in any crop-breeding programme requires high-throughput phenotyping of component traits of WUE plant such as intrinsic water use efficiency (WUE i ; CO 2 assimilation rate per stomatal conductance). Measuring WUE i by gas exchange measurements is laborious and time consuming and may not reflect an integrated WUE i over the life of the leaf. Alternatively, leaf carbon stable isotope composition (δ 13 C leaf ) has been suggested as a potential time-ntegrated proxy for WUE i that may provide a tool to screen for WUE plant . However, a genetic link between δ 13 C leaf and WUE plant in a C 4 species has not been well established. Thus, to confirm if there is a genetic relationship in a C 4 plant between δ 13 C leaf and WUE plant under well watered and water-limited growth conditions, a high-throughput phenotyping facility was used to measure WUE plant in a recombinant inbred line (RIL) population created between the C 4 grasses Setaria viridis and S. italica . Three quantitative trait loci (QTL) for δ 13 C leaf were found and co-localized with transpiration, biomass accumulation, and WUE plant . Additionally, WUE plant for each of the δ 13 C leaf QTL allele classes was negatively correlated with δ 13 C leaf , as would be predicted when WUE i influences WUE plant . These findings demonstrate that δ 13 C leaf is genetically linked to WUE plant , likely to be through their relationship with WUE i , and can be used as a high-throughput proxy to screen for WUE plant in these C 4 species.

59 BASIC BIOLOGICAL SCIENCES↗

Demonstrating SolarPILOT’s Python API Through Heliostat Optimal Aimpoint Strategy Use Case

SolarPILOT is a software package that generates solar field layouts and characterizes the optical performance of concentrating solar power (CSP) tower systems. SolarPILOT was developed by the National Renewable Energy Laboratory (NREL) as a stand-alone desktop application but has also been incorporated into NREL’s1 System Advisor Model (SAM) in a simplified format. Prior means for user interaction with SolarPILOT have included the application’s graphical interface, the SAM routines with limited configurability, and through a built-in scripting language called “LK.” This paper presents a new, full-featured, Python-based application programmable interface (API) for SolarPILOT, which we hereafter refer to as CoPylot. CoPylot provides access to all SolarPILOT’s capabilities to generate and characterize power tower CSP systems seamlessly through Python. Supported capabilities include (i) creating and destroying a model instance with message reporting tools; (ii) accessing and setting any SolarPILOT variable including custom land boundaries for field layouts; (iii) programmatically managing receiver and heliostat objects with varied attributes for systems with multiple receiver or heliostat types; (iv) generating, assigning, and modifying solar field layouts including the ability to set individual heliostat locations, aimpoints, soiling rates, and reflectivity levels; (v) simulating solar field performance; (vi) returning detailed results describing performance of individual heliostats, the aggregate field, and receiver flux distribution; and, (vii) exporting Python-based model instances to multiple file formats. CoPylot enables Python users to perform detailed CSP tower analysis utilizing either the Hermite expansion technique (analytical) or the SolTrace ray-tracing engine. In addition to CoPylot’s functionality, Python users have access to the over 100,000 open-source libraries to develop, analyze, optimize, and visualize power tower CSP research. This enables CSP researchers to perform analysis that was previously not possible through SolarPILOT’s existing interfaces. This paper discusses the capabilities of CoPylot and presents a use case wherein we demonstrate optimal solar field aiming strategies.

41 EE - Solar Energy Technologies Office (EE-4S)↗

Direct disposal of spent fuel: developing solutions tailored to Japan

With the past Government policy of 100% reprocessing in Japan now open to discussion, options for direct disposal of spent fuel (SF) are now being considered in Japan. The need to move rapidly ahead in developing spent fuel management concepts is closely related to the ongoing debate on the future of nuclear power in Japan and the desire to understand the true costs of the entire life cycle of different options. Different scenarios for future nuclear power - and associated decisions on extent of reprocessing - will give rise to quite different inventories of SF with different disposal challenges. Although much work has been carried out spent fuel disposal within other national programmes, the potential for mining the international knowledge base is limited by the boundary conditions for disposal in Japan. Indeed, with a volunteer approach to siting, no major salt deposits and few undisturbed sediments, high tectonic activity, relatively corrosive groundwater and no deserts, it is evident that a tailored solution is needed. Nevertheless, valuable lessons can be learned from projects carried out worldwide, if focus is placed on basic principles rather than implementation details. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗