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At least 1,369 records · Page 76

2-D soil zymography: Accounting for the spatial variation of pH

Soil zymography is commonly used to quantify spatial distribution of hydrolytic enzyme activities on soil and plant root surfaces. It is recommended to adjust pH in zymography substrates and calibration solutions with respect to soil/root pH. However, pH values may vary greatly within a few mm of plant rhizosphere, potentially altering the distribution of pH in zymography membranes. Despite the fact that the effect of pH on the calibration of zymography membranes is generally known, its potential impact on zymography results is unaccounted for in processing zymography images and calculations of enzyme activity. In this study we assessed the effect of pH variations on the persistency of the methylumbelliferone (MUF) calibration. The studied pH values ranged from 4.5 to 7.5. The MUF calibration curves greatly deviated from that at a reference pH of 6.5, with a marked nonlinear increase of deviation with greater membrane brightness. We suggest that the problem can be partially alleviated by reducing the membrane incubation time. However, such deviations suggest the need for a more comprehensive resolution via mapping pH and using pH-specific calibrations to process zymography images. Here, we developed a MATLAB code to implement a pixel-based correction of enzyme activity for pH in processing time-lapse zymography images.

59 BASIC BIOLOGICAL SCIENCES↗

Generalized models for inflationary preheating: Oscillations and symmetries

The paradigm of the inflationary universe provides a possible explanation for several observed cosmological properties. In order for such solutions to be successful, the universe must convert the energy stored in the inflaton potential into standard model particles through a process known as reheating. In this paper, we reconsider the reheating process for the case where the inflaton potential respects an approximate (but spontaneously broken) conformal symmetry during the reheating epoch. After reviewing the Effective Field Theory of Reheating, we present solutions for the nonlinear oscillations of the inflaton field, derive the corresponding Hill’s equation for the coupled reheating field, and determine the stability diagram for parametric resonance. For this class of models —the simplest realization being a scalar field with a quartic term—the expansion of the universe drives the coupled field toward a more unstable part of parameter space, in contrast to the standard case. We also generalize this class of models to include quadratic breaking terms in the potential during the reheating epoch and address the process of stability in that universality class of models.

Barrowes, Leia [University of Michigan, Ann Arbor]↗

Superconductivity Devices: Commercial Use of Space

The work described in this report covers various aspects of the Rainbow solid-state actuator and sensor technologies. It is presented in five parts dealing with sensor applications, nonlinear properties, stress-optic and electrooptic properties, stacks and arrays, and publications. The Rainbow actuator technology is a relatively new materials development which had its inception in 1992. It involves a new processing technique for preparing pre-stressed, high lead containing piezoelectric and electrostrictive ceramic materials. Ceramics fabricated by this method produce bending-mode actuator devices which possess several times more displacement and load bearing capacity than present-day benders. Since they can also be used in sensor applications, Rainbows are part of the family of materials known as smart ceramics. During this period, PLZT Rainbow ceramics were characterized with respect to their piezoelectric properties for potential use in stress sensor applications. Studies of the nonlinear and stress-optic/electrooptic birefringent properties were also initiated during this period. Various means for increasing the utility of stress-enhanced Rainbow actuators are presently under investigation.

Haertling, Gene↗

Nonlinear Shock Acceleration and Photon Emission in Supernova Remnants

We have extended a simple model of nonlinear diffusive shock acceleration (Berezhko & Ellison 1999: Ellison &, Berezhko 1999a) to include the injection and acceleration of electrons and the production of photons from bremsstrahlung, synchrotron, inverse Compton, and pion-decay processes. We argue that, the results of this model, which is simpler to use than more elaborate ones, offer a significant improvement, over test-particle, power-law spectra which are often used in astrophysical applications of diffusive shock acceleration. With an evolutionary supernova remnant (SNR) model to obtain shock parameters as functions of ambient interstellar medium parameters and time, we predict broad-band continuum photon emission from supernova remnants in general, and SN1006 in particular, showing that our results compare well with the more complete time-dependent and spherically symmetric nonlinear model of Berezhko, Ksenofontov, & Petukhov (1999a). We discuss the implications nonlinear shock acceleration has for X-ray line emission, and use our model to describe how ambient conditions determine the TeV/radio flux ratio, an important parameter for gamma-ray observations of radio SNRs.

Ellison, Donald C.↗

Evaluating the effect of meso/submesoscale current–wave interactions on wave energy resource characterization at northeast U.S. coast

Wave energy is a promising renewable resource, but accurate assessment is difficult in regions with strong currents due to wave–current interactions (WCI). Here, this study develops a two-way coupled WCI model within the Coupled Ocean Atmosphere Wave Sediment Transport (COAWST) framework at 2 km resolution to improve wave energy characterization along the northeastern U.S. coast, including the Mid-Atlantic Bight and Gulf of Maine. The model integrates WaveWatchIII (WWIII) and the Regional Ocean Modeling System (ROMS) to enhance wave hindcasting by accounting for Doppler-shift, refraction, and nonlinear energy exchanges. Validation against buoy and satellite observations confirms model accuracy. Analysis shows that Doppler-shifting can alter wave power density by over 20%, while strong current gradients and shear distort wave crests via focusing/defocusing and stretching/squeezing, modifying wave direction and frequency. These processes together can induce wave power fluctuations of up to 40% on synoptic scales. Applying a 2.5 MW Ocean Energy Converter power matrix shows that WCI may change harvested energy by up to 100% in shallow-waters and 60% in deep-waters. These results underscore the importance of incorporating nonlinear WCI for reliable wave climate predictions and resource assessments in energetic coastal regions.

doppler-shift↗

Efficient data-driven regression for reduced-order modeling of spatial pattern formation

We present an efficient data-driven regression approach for constructing reduced-order models (ROMs) of reaction-diffusion systems exhibiting pattern formation. The ROMs are learned non-intrusively from available training data of physically accurate numerical simulations. The method can be applied to general nonlinear systems through the use of polynomial model form, while not requiring knowledge of the underlying physical model, governing equations, or numerical solvers. The process of learning ROMs is posed as a low-cost least-squares problem in a reduced-order subspace identified via Proper Orthogonal Decomposition (POD). Numerical experiments on classical pattern-forming systems–including the Schnakenberg and Mimura–Tsujikawa models–demonstrate that higher-order surrogate models significantly improve prediction accuracy while maintaining low computational cost. The proposed method provides a flexible, non-intrusive model reduction framework, well suited for the analysis of complex spatio-temporal pattern formation phenomena.

Data-driven modeling↗

Decentralized digital twins of complex dynamical systems

Abstract In this article, we introduce a decentralized digital twin (DDT) modeling framework and its potential applications in computational science and engineering. The DDT methodology is based on the idea of federated learning, a subfield of machine learning that promotes knowledge exchange without disclosing actual data. Clients can learn an aggregated model cooperatively using this method while maintaining complete client-specific training data. We use a variety of dynamical systems, which are frequently used as prototypes for simulating complex transport processes in spatiotemporal systems, to show the viability of the DDT framework. Our findings suggest that constructing highly accurate decentralized digital twins in complex nonlinear spatiotemporal systems may be made possible by federated machine learning.

97 MATHEMATICS AND COMPUTING↗

Recipes for when physics fails: recovering robust learning of physics informed neural networks

Abstract Physics-informed neural networks (PINNs) have been shown to be effective in solving partial differential equations by capturing the physics induced constraints as a part of the training loss function. This paper shows that a PINN can be sensitive to errors in training data and overfit itself in dynamically propagating these errors over the domain of the solution of the PDE. It also shows how physical regularizations based on continuity criteria and conservation laws fail to address this issue and rather introduce problems of their own causing the deep network to converge to a physics-obeying local minimum instead of the global minimum. We introduce Gaussian process (GP) based smoothing that recovers the performance of a PINN and promises a robust architecture against noise/errors in measurements. Additionally, we illustrate an inexpensive method of quantifying the evolution of uncertainty based on the variance estimation of GPs on boundary data. Robust PINN performance is also shown to be achievable by choice of sparse sets of inducing points based on sparsely induced GPs. We demonstrate the performance of our proposed methods and compare the results from existing benchmark models in literature for time-dependent Schrödinger and Burgers’ equations.

97 MATHEMATICS AND COMPUTING↗

Anomalous ellipticity dependence of the generation of near-threshold harmonics in noble gases

We measured the ellipticity dependence of the harmonic yield of He, Ne, Ar, Kr, and Xe. It is found that the harmonic yield in general decreases monotonically with increasing laser ellipticity but anomalous dependence does occur for each atom for some harmonic orders. Additionally, we found that the degree of anomaly is weakest in helium but is stronger for the heavier atoms. The anomaly also depends on laser intensity. To explain these features, we developed a quantum trajectory Monte Carlo (QTMC) model based on the quantum path integral theory to study high-order harmonic generation (HHG). The model includes the effect of Coulomb potential from the target ion, thus it is capable of calculating near-threshold harmonics quantitatively. This model reveals that the presence of Coulomb potential would generate orbiting trajectories which are responsible for the anomalous ellipticity dependence near the threshold.

74 ATOMIC AND MOLECULAR PHYSICS↗

Nonlinear control of an experimental beam by IMSC

Results are reported from an experiment designed to control the vibratory motion of a beam at NASA, Langley Research Center. The experimental setup consists of a free-free uniform beam acted upon by four electromagnetic force actuators, with the motion being measured by nine displacement sensors. The entire assembly is linked to a CDC Cyber 175 computer which permits on-line real-time computation of the control forces. The control scheme is based on Independent Modal-Space Control (IMSC), whereby the modal forces are computed using a nonlinear, on-off control law. The actuator forces are then synthesized using a linear transformation, resulting in quantized forces. The sensors data is processed by modal filters. It is observed that the controls designed on the basis of the IMSC method are very effective in suppressing the vibratory motion of the beam, even though there is about a 50 percent differene between the actual and the analytically computed frequencies.

Meirovitch, L.↗

ICIASF '85 - International Congress on Instrumentation in Aerospace Simulation Facilities, 11th, Stanford University, CA, August 26-28, 1985, Record

Developments related to laser Doppler velocimetry are discussed, taking into account a three-component dual beam laser-Doppler-anemometer to be operated in large wind tunnels, a new optical system for three-dimensional laser-Doppler-anemometry using an argon-ion and a dye laser, and a two-component laser Doppler velocimeter by switching fringe orientation. Other topics studied are concerned with facilities, instrumentation, control, hot wire/thin film measurements, optical diagnostic techniques, signal and data processing, facilities and adaptive wall test sections, data acquisition and processing, ballistic instrument systems, dynamic testing and material deformation measurements, optical flow measurements, test techniques, force measurement systems, and holography. Attention is given to nonlinear calibration of integral wind tunnel balances, a microcomputer system for real time digitized image compression, and two phase flow diagnostics in propulsion systems.

Source record↗

Effect of ephemeris errors on the accuracy of the computation of the tangent point altitude of a solar scanning ray as measured by the SAGE 1 and 2 instruments

An analysis was made of the error in the minimum altitude of a geometric ray from an orbiting spacecraft to the Sun. The sunrise and sunset errors are highly correlated and are opposite in sign. With the ephemeris generated for the SAGE 1 instrument data reduction, these errors can be as large as 200 to 350 meters (1 sigma) after 7 days of orbit propagation. The bulk of this error results from errors in the position of the orbiting spacecraft rather than errors in computing the position of the Sun. These errors, in turn, result from the discontinuities in the ephemeris tapes resulting from the orbital determination process. Data taken from the end of the definitive ephemeris tape are used to generate the predict data for the time interval covered by the next arc of the orbit determination process. The predicted data are then updated by using the tracking data. The growth of these errors is very nearly linear, with a slight nonlinearity caused by the beta angle. An approximate analytic method is given, which predicts the magnitude of the errors and their growth in time with reasonable fidelity.

Buglia, James J.↗

The Sizing and Optimization Language (SOL): A computer language to improve the user/optimizer interface

The nonlinear mathematical programming method (formal optimization) has had many applications in engineering design. A figure illustrates the use of optimization techniques in the design process. The design process begins with the design problem, such as the classic example of the two-bar truss designed for minimum weight as seen in the leftmost part of the figure. If formal optimization is to be applied, the design problem must be recast in the form of an optimization problem consisting of an objective function, design variables, and constraint function relations. The middle part of the figure shows the two-bar truss design posed as an optimization problem. The total truss weight is the objective function, the tube diameter and truss height are design variables, with stress and Euler buckling considered as constraint function relations. Lastly, the designer develops or obtains analysis software containing a mathematical model of the object being optimized, and then interfaces the analysis routine with existing optimization software such as CONMIN, ADS, or NPSOL. This final state of software development can be both tedious and error-prone. The Sizing and Optimization Language (SOL), a special-purpose computer language whose goal is to make the software implementation phase of optimum design easier and less error-prone, is presented.

Lucas, S. H.↗

Self-calibration of robot-sensor system

The process of finding the coordinate transformation between a robot and an external sensor system has been addressed. This calibration is equivalent to solving a nonlinear optimization problem for the parameters that characterize the transformation. A two-step procedure is herein proposed for solving the problem. The first step involves finding a nominal solution that is a good approximation of the final solution. A varational problem is then generated to replace the original problem in the next step. With the assumption that the variational parameters are small compared to unity, the problem that can be more readily solved with relatively small computation effort.

Yeh, Pen-Shu↗

Protein-Precipitant-Specific Criteria for the Impact of Reduced Gravity on Crystal Perfection

The objective of this research is to provide quantitative criteria for the impact of reduced or enhanced convective transport on protein crystal perfection. Our earlier work strongly suggests that the magnitude of (lattice defect-inducing) fluctuations in the crystallization rate of proteins arise from the coupling of bulk transport and nonlinear interface kinetics. Hence, we surmised that, depending on the relative weight of bulk transport and interface kinetics in the control of the crystallization process on Earth, these fluctuations can either increase or decrease under reduced gravity conditions. The sign and magnitude of these changes depend on the specific protein-precipitant system. As a consequence, space environments can be either beneficial or detrimental for achieving structural perfection in protein crystals. The task objectives consist in systematic investigations of this hypothesis.

Vekilov, Peter G.↗

Correspondence between discrete and continuous models of excitable media: trigger waves

We present a theoretical framework for relating continuous partial differential equation (PDE) models of excitable media to discrete cellular automata (CA) models on a randomized lattice. These relations establish a quantitative link between the CA model and the specific physical system under study. We derive expressions for the CA model's plane wave speed, critical curvature, and effective diffusion constant in terms of the model's internal parameters (the interaction radius, excitation threshold, and time step). We then equate these expressions to the corresponding quantities obtained from solution of the PDEs (for a fixed excitability). This yields a set of coupled equations with a unique solution for the required CA parameter values. Here we restrict our analysis to "trigger" wave solutions obtained in the limiting case of a two-dimensional excitable medium with no recovery processes. We tested the correspondence between our CA model and two PDE models (the FitzHugh-Nagumo medium and a medium with a "sawtooth" nonlinear reaction source) and found good agreement with the numerical solutions of the PDEs. Our results suggest that the behavior of trigger waves is actually controlled by a small number of parameters.

Non-NASA Center↗

An Algorithm for the Fitting of Planet Models to Kepler Light Curves

We describe an algorithm which fits model planetary system parameters to light curves from Kepler Mission target stars. The algorithm begins by producing an initial model of the system which is used to seed the fit,with particular emphasis on obtaining good transit timing parameters. An attempt is then made to determine whether the observed transits are more likely due to a planet or an eclipsing binary. In the event that the transits are consistent with a transiting planet, an iterative fitting process is initiated: a wavelet-based whitening filter is used to eliminate stellar variations on timescales long compared to a transit; a robust nonlinear fitter operating on the whitened light curve produces a new model of the system; and the procedure iterates until convergence upon a self-consistent whitening filter and planet model. The fitted transits are removed from the light curve anda search for additional planet candidates is performed upon the residual light curve. The fitted models are used in additional tests which identify false positive planet detections: multiple planet candidates with near-identical fitted periods are far more likely to be an eclipsing binary, for example, while target stars in which the model lightcurve is correlated with the star centroid position may indicate a background eclipsing binary, and subtraction of all model planet candidates yields a light curve of pure noise and stellar variability, which can be used to study the probability that the planet candidates result from statistical fluctuations in the data.

Exoplanet↗

A chaotic attractor in timing noise from the Vela pulsar?

Fourteen years of timing residual data from the Vela pulsar have been analyzed in order to determine if a chaotic dynamical process is the origin of timing noise. Using the correlation sum technique, a dimension of about 1.5 is obtained. This low dimension indicates underlying structure in the phase residuals which may be evidence for a chaotic attractor. It is therefore possible that nonlinear dynamics intrinsic to the spin-down may be the cause of the timing noise in the Vela pulsar. However, it has been found that the stimulated random walks in frequency and frequency derivative often used to model pulsar timing noise also have low fractal dimension, using the same analysis technique. Recent work suggesting that random processes with steep power spectra can mimic strange attractors seems to be confirmed in the case of these random walks. It appears that the correlation sum estimator for dimension is unable to distinguish between chaotic and random processes.

Harding, Alice K.↗