Vapor-Phase Halogenation of Hydrogen-Terminated Silicon(100) Using N -Halogen-succinimides
Not Available
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
SEARCH · Engineering Papers
Results for “Functional groups”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Interplay between Facets and Defects during the Dissociative and Molecular Adsorption of Water on Metal Oxide Surfaces
Both surface terminations and defects play a central role in determining how water interacts with metal oxides, thereby setting important properties of the interface that govern reactivity such as the type and distribution of hydroxyl groups. However, the interconnections between facets and defects remain poorly understood, limiting the usefulness of conventional notions such as that hydroxylation is controlled by metal cation exposure at the surface. Here, using hematite (α-Fe 2 O 3 ) as a model system, we show how oxygen vacancies overwhelm surface cation-dependent hydroxylation behavior. Synchrotron-based ambient-pressure X-ray photoelectron spectroscopy was used to monitor the adsorption of molecular water and its dissociation to form hydroxyl groups in situ on (001), (012), or (104) facet-engineered hematite nanoparticles. Supported by density functional theory calculations of the respective surface energies and oxygen vacancy formation energies, the findings show how oxygen vacancies are more prone to form on higher energy facets and induce surface hydroxylation at extremely low relative humidity values of 5 x10 - 5 %. Further, when these vacancies are eliminated, the extent of surface hydroxylation across the facets is as expected from the areal density of exposed iron cations at the surface. These findings help answer fundamental questions about the nature of reducible metal oxide-water interfaces in natural and technological settings and lay the groundwork for rational design of improved oxide-based catalysts.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Holographic codes from hyperinvariant tensor networks
Holographic quantum-error correcting codes are models of bulk/boundary dualities such as the anti-de Sitter/conformal field theory (AdS/CFT) correspondence, where a higher-dimensional bulk geometry is associated with the code’s logical degrees of freedom. Previous discrete holographic codes based on tensor networks have reproduced the general code properties expected from continuum AdS/CFT, such as complementary recovery. However, the boundary states of such tensor networks typically do not exhibit the expected correlation functions of CFT boundary states. In this work, we show that a new class of exact holographic codes, extending the previously proposed hyperinvariant tensor networks into quantum codes, produce the correct boundary correlation functions. This approach yields a dictionary between logical states in the bulk and the critical renormalization group flow of boundary states. Furthermore, these codes exhibit a state-dependent breakdown of complementary recovery as expected from AdS/CFT under small quantum gravity corrections.
97 MATHEMATICS AND COMPUTING↗
Group IV topological quantum alloy and the role of short-range order: the case of Ge-rich Ge 1– x Pb x
Despite the explosion of interest in topological materials over the last decades, their applications remain limited due to challenges in growth and incorporation with today’s microelectronics. As a potential bridge to close this gap, we investigate the group-IV alloy Ge 1–x Pb x , in the Ge-rich condition using density functional theory and show that relatively low concentrations of Pb (~9.4%) can lead to a topological phase transition. Furthermore, the calculation of the Z 2 invariant for both the random alloy and the alloy with short-range order (SRO) indicate that the topological phase of the material can be directly modified by the degree of SRO. These findings are understood in terms of local structural relaxation, which decreases the bandgap in the random alloy. However, in the SRO case, the mutual avoidance of Pb leads to minimal structural relaxation, alleviating strain. Our findings not only highlight the emerging importance of SRO in alloy properties but also indicate the possibility of constructing topological interfaces between materials of identical composition (and nominally identical structure). Moreover, they uncover a viable avenue toward the monolithic integration of quantum materials with today’s semiconductor industry.
36 MATERIALS SCIENCE↗
An open database of computed bulk ternary transition metal dichalcogenides
Abstract We present a dataset of structural relaxations of bulk ternary transition metal dichalcogenides (TMDs) computed via plane-wave density functional theory (DFT). We examined combinations of up to two chalcogenides with seven transition metals from groups 4–6 in octahedral (1T) or trigonal prismatic (2H) coordination. The full dataset consists of 672 unique stoichiometries, with a total of 50,337 individual configurations generated during structural relaxation. Our motivations for building this dataset are (1) to develop a training set for the generation of machine and deep learning models and (2) to obtain structural minima over a range of stoichiometries to support future electronic analyses. We provide the dataset as individual VASP xml files as well as all configurations encountered during relaxations collated into an ASE database with the corresponding total energy and atomic forces. In this report, we discuss the dataset in more detail and highlight interesting structural and electronic features of the relaxed structures.
36 MATERIALS SCIENCE↗
A heterogeneous iridium single-atom-site catalyst for highly regioselective carbenoid O–H bond insertion
Transition-metal-catalysed carbenoid insertion of hydroxyl groups represents a robust and versatile method to forge C–O bonds. Achieving site-selective functionalization of alcohols using this transformation has undoubted synthetic value but remains challenging. Here we report a strategy for selective carbenoid O–H insertion that exploits an engineered heterogeneous iridium single-atom catalyst, thus providing opportunities for organic transformations by merging material science and catalysis. This catalytic protocol delivers excellent selectivities (up to 99:1) for the functionalization of aliphatic over phenolic O–H bonds, whereas the analogous homogeneous catalyst, Ir(ttp)COCl (ttp = 5,10,15,20-tetra-p-tolylporphyrinato), provided modest preferences. Density-functional-theory calculations suggest that the site-selectivity derives from the lower oxidation state of the iridium metal centre in the heterogeneous catalyst and its impact on the absorption energies of the reactants. These results showcase an example of a heterogeneous single-atom catalyst providing superior site-selectivity and provide a complementary strategy to address challenges in catalysis for organic synthesis. [Figure not available: see fulltext.]
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Lost in translation: What we have learned from attributes that do not translate from Arabidopsis to other plants
Abstract Research in Arabidopsis thaliana has a powerful influence on our understanding of gene functions and pathways. However, not everything translates from Arabidopsis to crops and other plants. Here, a group of experts consider instances where translation has been lost and why such translation is not possible or is challenging. First, despite great efforts, floral dip transformation has not succeeded in other species outside Brassicaceae. Second, due to gene duplications and losses throughout evolution, it can be complex to establish which genes are orthologs of Arabidopsis genes. Third, during evolution Arabidopsis has lost arbuscular mycorrhizal symbiosis. Fourth, other plants have evolved specialized cell types that are not present in Arabidopsis. Fifth, similarly, C4 photosynthesis cannot be studied in Arabidopsis, which is a C3 plant. Sixth, many other plant species have larger genomes, which has given rise to innovations in transcriptional regulation that are not present in Arabidopsis. Seventh, phenotypes such as acclimation to water stress can be challenging to translate due to different measurement strategies. And eighth, while the circadian oscillator is conserved, there are important nuances in the roles of circadian regulators in crop plants. A key theme emerging across these vignettes is that even when translation is lost, insights can still be gained through comparison with Arabidopsis.
Biochemistry & Molecular Biology↗
Microscopic study of the coupled-wire construction and plausible realization in spin-dependent optical lattices
Coupled-wire constructions offer particularly simple and powerful models to capture the essence of strongly correlated topological phases of matter. They often rely on effective theories valid in the low-energy and strong-coupling limits, which impose severe constraints on the physical systems where they could be realized. In this work, we investigate the microscopic relevance of a class of coupled-wire models and their possible experimental realization in cold-atom experiments. We connect with earlier results and prove the emergence of fractional quantum Hall states in the limit of strong interwire tunneling. Contrary to previous studies relying on renormalization group arguments, our microscopic approach exposes the connection between coupled-wire constructions and model wave functions in continuum Landau levels. Then, we use exact-diagonalization methods to investigate the appearance of these fractional quantum Hall states in more realistic settings. We examine the parameter regimes where these strongly correlated phases arise, and provide a way to detect their appearance in cold-atom experiments through standard time-of-flight measurements. Motivated by this experimental probe, we finally propose a realization of our model with cold atoms in spin-dependent optical lattices. Our estimates show that the previous fractional quantum Hall phases lie within experimentally accessible parameter regimes, giving a viable route toward their experimental study.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Revisiting the gluon density from the Balitsky-Kovchegov equation with kinematical constraints and large 𝑥 terms
We perform analysis of the small 𝑥 nonlinear evolution equation formulated in momentum space supplemented by higher order terms. The equation is defined in the wide range of transverse momentum and longitudinal momentum fractions extending previous studies performed in Kutak and Kwiecinski [Screening effects in the ultrahigh-energy neutrino interactions, Eur. Phys. J. C 29, 521 (2003).] and in Kutak and Stasto [Unintegrated gluon distribution from modified BK equation, Eur. Phys. J. C 41, 343 (2005).]. The linear part of the equation is motivated by the renormalization group improved small 𝑥 approach, which accounts for resummation of higher orders, and includes collinear splitting functions and kinematical constraints. The solution to the equation is then used to perform the fit to deep inelastic scattering reduced cross section data.
Perturbative QCD↗
Accelerated Aging of a Polymer-Supported Molecular Amine Direct Air Capture Sorbent: Experiments and Theory
Amine-functionalized polymer sorbents are the preferred materials for CO2 extraction from air (DAC) due to their “high” CO2 adsorption capacity and selectivity at ultra-dilute conditions. The lifetime of adsorbents is a key property of equal importance as adsorption capacity, selectivity and kinetics with direct impact on the economics of commercial-scale operations. Therefore, a detailed investigation into the contributing factors (e.g. temperature, humidity) as well as the mechanism of amine degradation is vital for the development of amines with long-term stability. Herein, in situ attenuated total reflection (ATR) Fourier transform infrared spectroscopy (FTIR) is used to monitor the real time changes to amine-based sorbents under systematically varied conditions. In addition, IR spectra obtained from density functional theory molecular dynamics are used to obtain mechanistic insights pertaining to the degradation of amine groups in DAC sorbents.
Muldoon, Patrick↗
Metabolic Signaling Cascades Prompted by Glutaminolysis in Cancer
Aberrant glutamatergic signaling has been implicated in altered metabolic activity and the demand to synthesize biomass in several types of cancer including melanoma. In the last decade, there has been a significant contribution to our understanding of metabolic pathways. An increasing number of studies are now emphasizing the importance of glutamate functioning as a signaling molecule and a building block for cancer progression. To that end, our group has previously illustrated the role of glutamatergic signaling mediated by metabotropic glutamate receptor 1 (GRM1) in neoplastic transformation of melanocytes in vitro and spontaneous development of metastatic melanoma in vivo. Glutamate, the natural ligand of GRM1, is one of the most abundant amino acids in humans and the predominant excitatory neurotransmitter in the central nervous system. Elevated levels of glutaminolytic mitochondrial tricarboxylic acid (TCA) cycle intermediates, especially glutamate, have been reported in numerous cancer cells. Herein, we highlight and critically review metabolic bottlenecks that are prevalent during tumor evolution along with therapeutic implications of limiting glutamate bioavailability in tumors.
Shah, Raj (ORCID:0000000204400189)↗
White Dwarf Binaries across the H-R Diagram
We created the APOGEE-GALEX-Gaia catalog to study white dwarf (WD) binaries. This database aims to create a minimally biased sample of WD binary systems identified from a combination of GALEX, Gaia, and APOGEE data to increase the number of WD binaries with orbital parameters and chemical compositions. We identify 3414 sources as WD binary candidates, with nondegenerate companions of spectral types between F and M, including main-sequence stars, main-sequence binaries, subgiants, sub-subgiants, red giants, and red clump stars. Among our findings are (a) a total of 1806 systems having inferred WD radii R < 25 R ⊕ , which constitute a more reliable group of WD binary candidates within the main sample; (b) a difference in the metallicity distribution function between WD binary candidates and the control sample of most luminous giants (M H < -3.0); (c) the existence of a population of sub-subgiants with WD companions; (d) evidence for shorter periods in binaries that contain WDs compared to those that do not, as shown by the cumulative distributions of APOGEE radial velocity shifts; (e) evidence for systemic orbital evolution in a sample of 252 WD binaries with orbital periods, based on differences in the period distribution between systems with red clump, main-sequence binary, and sub-subgiant companions and systems with main-sequence or red giant companions; and (f) evidence for chemical enrichment during common envelope (CE) evolution, shown by lower metallicities in wide WD binary candidates (P > 100 days) compared to post-CE (P < 100 days) WD binary candidates.
79 ASTRONOMY AND ASTROPHYSICS↗
Zoned namespaces for computing device main memory
Disclosed in some examples are methods, systems, memory devices, memory controllers, and machine-readable mediums which provide for reserving physical memory device resources to specific execution units. Execution units may include processes, threads, virtual machines, functions, procedures, or the like. Physical memory device resources may include channels, modules, ranks, banks, bank groups, and the like. For example, a physical memory device resource that is reservable may be a smallest unit that allows for parallel access with another of the same size unit.
Sheridan, Patrick Michael↗
Translocation mechanism of xeroderma pigmentosum group D protein on single-stranded DNA and genetic disease etiology
Abstract XPD is a key nucleotide excision repair (NER) protein whose function is vital for genome integrity. During NER, XPD serves as a 5′−3′ single-strand DNA translocase that enables lesion scanning and verification in genomic DNA. Yet, its translocation mechanism is incompletely understood. Here we use molecular simulations and chain-of-replicas path optimization methods to model the ATP-driven translocation mechanisms of XPD and its bacterial homolog DinG, revealing all on-path metastable intermediates and corresponding kinetic rates. We identify the XPD(DinG) global domain motions that modulate the strength of DNA association at the opposing ends of the DNA-binding groove. During the ATP hydrolysis cycle, alternating weak and strong interactions at two defined groove constrictions enable DNA reptation and forward displacement of the ATPase. Moreover, we show that DNA- or ATP-binding residues directly involved in translocation are hotspots for genetic disease mutations. Thus, our findings shed light on the etiology of XPD-associated genetic syndromes.
Paul, Tanmoy↗
Competitive effects of glucan’s main hydrolysates on biochar formation: A combined experiment and density functional theory analysis
We report the complexity of polysaccharide hydrothermal products increases the difficulty of exploring the formation of biochar, limiting the development of biochar. This work clarifies the completive effects of glucan’s main hydrolysates on biochar formation from three aspects: experimental, thermodynamic, and kinetic. The products distribution illustrates that 5-HMF, FA, and LA are mainly involved in the formation of biochar. Biochar mainly includes furan ring, ether group, and ester group by the analysis of magic-angle-spinning nuclear magnetic resonance, X-ray photoelectron spectroscopy, and elemental analysis. Combined experiments and density functional theory analysis, the etherification reaction of 5-HMF itself is most likely to occur and is key to form biochar, followed by the esterification of FA with 5-HMF, and then the etherification of 5-HMF and LA. The further verified experiments also manifest these results. This work will develop a foundation for exploring the complex formation mechanism of cellulose-based biochar.
59 BASIC BIOLOGICAL SCIENCES↗
One fold, many functions—M23 family of peptidoglycan hydrolases
Bacterial cell walls are the guards of cell integrity. They are composed of peptidoglycan that provides rigidity to sustain internal turgor and ensures isolation from the external environment. In addition, they harbor the enzymatic machinery to secure cell wall modulations needed throughout the bacterial lifespan. The main players in this process are peptidoglycan hydrolases, a large group of enzymes with diverse specificities and different mechanisms of action. They are commonly, but not exclusively, found in prokaryotes. Although in most cases, these enzymes share the same molecular function, namely peptidoglycan hydrolysis, they are leveraged to perform a variety of physiological roles. A well-investigated family of peptidoglycan hydrolases is M23 peptidases, which display a very conserved fold, but their spectrum of lytic action is broad and includes both Gram- positive and Gram- negative bacteria. In this review, we summarize the structural, biochemical, and functional studies concerning the M23 family of peptidases based on literature and complement this knowledge by performing large-scale analyses of available protein sequences. This review has led us to gain new insight into the role of surface charge in the activity of this group of enzymes. We present relevant conclusions drawn from the analysis of available structures and indicate the main structural features that play a crucial role in specificity determination and mechanisms of latency. Our work systematizes the knowledge of the M23 family enzymes in the context of their unique antimicrobial potential against drug-resistant pathogens and presents possibilities to modulate and engineer their features to develop perfect antibacterial weapons.
Razew, Alicja↗
Molecular Design of Functional Polymers for Silica Scale Inhibition
Silica polymerization, which involves the condensation reaction of silicic acid, is a fundamental process with wide-ranging implications in biological systems, material synthesis, and scale formation. The formation of a silica-based scale poses significant technological challenges to energy-efficient operations in various industrial processes, including heat exchangers and water treatment membranes. Despite the common strategy of applying functional polymers for inhibiting silica polymerization, the underlying mechanisms of inhibition remain elusive. In this study, we synthesized a series of nitrogen-containing polymers as silica inhibitors and elucidated the role of their molecular structures in stabilizing silicic acids. Polymers with both charged amine and uncharged amide groups in their backbones exhibit superior inhibition performance, retaining up to 430 ppm of reactive silica intact for 8 h under neutral pH conditions. In contrast, monomers of these amine/amide-containing polymers as well as polymers containing only amine or amide functionalities present insignificant inhibition. Molecular dynamics simulations reveal strong binding between the deprotonated silicic acid and a polymer when the amine groups in the polymer are protonated. Notably, an extended chain conformation of the polymer is crucial to prevent proximity between the interacting monomeric silica species, thereby facilitating effective silica inhibition. Furthermore, the hydrophobic nature of alkyl segments in polymer chains disrupts the hydration shell around the polymer, resulting in enhanced binding with ionized silicic acid precursors compared to monomers. Finally, our findings provide novel mechanistic insights into the stabilization of silicic acids with functional polymers, highlighting the molecular design principles of effective inhibitors for silica polymerization.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
SAGAbg. III. Environmental Stellar Mass Functions, Self-quenching, and the Stellar-to-halo Mass Relation in the Dwarf Galaxy Regime
Recent efforts have extended our view of the number and properties of satellite galaxies beyond the Local Group firmly down to M ⋆ ∼ 10 6 M ⊙ . A similarly complete view of the field dwarf population has lagged behind. Using the background galaxy sample from the Satellites Around Galactic Analogs (SAGA) survey at z < 0.05, we take inventory of the dwarf population down to M ⋆ ∼ 5 × 10 6 M ⊙ using three metrics: the stellar mass function (SMF) as a function of environment, the stellar-to-halo mass relation (SHMR) of dwarf galaxies inferred via abundance matching, and the quenched fraction of highly isolated dwarfs. We find that the low-mass SMF shape shows minimal environmental dependence, with the field dwarf SMF described by a low-mass power-law index of α 1 = −1.44 ± 0.09 down to M ⋆ ∼ 5 × 10 6 M ⊙ , and that the quenched fraction of isolated dwarfs drops monotonically to f q ∼ 10 −3 at M ⋆ ∼ 10 8.5 M ⊙ . Though slightly steeper than estimates from H I kinematic measures, our inferred SHMR agrees with literature measurements of satellite systems, consistent with minimal environmental dependence of the SHMR in the probed mass range. Finally, although most contemporary cosmological simulations against which we compare accurately predict the SAGAbg-SMF SHMR, we find that big-box cosmological simulations largely overpredict isolated galaxy quenched fractions via a turnaround in f q (M ⋆ ) at 10 8 ≲ M ⋆ /M ⊙ ≲ 10 9 , underscoring the complexities in disentangling the drivers of galaxy formation and the need for systematic multidimensional observations of the dwarf population across environments.
Kado-Fong, Erin [Yale Univ., New Haven, CT (United↗