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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,369 records · Page 76
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism

Significance Reaction centers (RCs) are critical to photosynthetic energy conversion. RCs in all characterized photosynthetic organisms contain two symmetrically arranged branches of chromophores and enable light-induced electron transfer with high yield. We fine-tune the properties of a key bacterial RC symmetry-breaking tyrosine via its replacement with noncanonical tyrosine analogs and determine kinetic outcomes. Results are interpreted through energetic characterization made possible by resonance Stark spectroscopy. Analysis indicates this tyrosine modulates the mechanism of the initial light-induced electron transfer, affording an alternative functional pathway that maintains the RC’s robust electron transfer. Modern molecular biology, ultrafast spectroscopy, crystallography, and energetic characterization enable the mechanistic model we describe. Our results deepen understanding of RC function and may have implications for other photocatalysts and enzymes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Evaluation of Digital Nautical Chart data for confirmation and expansion of GeoNames data

Here, this work examines how Digital Nautical Chart (DNC) data may contribute to the evolution and refinement of GeoNames data for near-shore features. GeoNames features are point data with one or more possible place names. DNC Earth Cover Text (ECRText) objects are map labels positioned nearby their real word counterpart. ECRText feature map position strikes a compromise between association with real features and cartographic readability. This work explores whether ECRText features can confirm (or expand names for) existing locations or contribute new locations through data conflation. Due to name variations and spatial position, conflating these data are nontrivial. Previous work engaged in a brief examination using the trigram string matching algorithm under coarse proximity constraints, indicating that ECRText could provide additional value to GeoNames. This work builds on that study, by engaging in a deeper examination of spatial proximity and exploring conflation agreement across an ensemble of string matching approaches. The result finds strong ensemble agreement about ECRText features which already exist in GeoNames but mixed results about which features contribute new information, as well as exploring why some of these matching techniques fail. With an eye toward automation, computational efficiency was found not to be a constraint in sustaining updates.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2023

Constructing the space of quasisymmetric stellarators through near-axis expansion

Abstract A simplified view of the space of optimised stellarators has the potential to guide and aid the design efforts of magnetic confinement configurations suitable for future fusion reactors. We present one such view for the class of quasisymmetric stellarators based on their approximate description near their centre (magnetic axis). The result is a space that captures existing designs and presents new ones, providing a common framework to study them. Such a simplified construction offers a basic topological approach, guided by certain theoretical and physical choices, which this paper presents in detail.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

How fluctuation intensity flux drives SOL expansion

Abstract Predictions of heat load widths λ q based on particle orbits alone are very pessimistic. This paper shows that pedestal peeling-ballooning (P-B) magnetohydrodynamic (MHD) turbulence broadens the stable scrape-off layer (SOL) by the transport, or spreading, of fluctuation energy from the pedestal. λ q is seen to increase with Γ ε , the fluctuation energy density flux. We elucidate the fundamental physics of the spreading process. Γ ε increases with pressure fluctuation correlation length. P-B turbulence is seen to be especially effective at spreading, on account of its large effective mixing length. Spreading is shown to be a multiscale process, which is enhanced by the synergy of large and small-scale modes. Pressure fluctuation skewness correlates well with the spreading flux–with the zero crossing of skewness and Γ ε spatially coincident–suggesting the role of coherent fluctuation structures and the presence of intermittency in λ q broadening. λ q ∼ B p − 1 scaling persists for the broadened SOL. We show that the spreading flux increases for increasing pedestal pressure gradient ∇ P 0 and for decreasing pedestal collisionality υ ped ∗ . This trend is due to the dominance of peeling modes for large ∇ P 0 and low υ ped ∗ . Ultimately, we see that a state of weak MHD turbulence, as for small ELMs, is very attractive for heat load management. Our findings have transformative implications for future fusion reactor designs and call for experimental investigations to validate the observed trends.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Challenging excited states from adaptive quantum eigensolvers: subspace expansions vs. state-averaged strategies

The prediction of electronic structure for strongly correlated molecules represents a promising application for near-term quantum computers. Significant attention has been paid to ground state wavefunctions, but excited states of molecules are relatively unexplored. In this work, we consider the adaptive, problem-tailored (ADAPT)-variational quantum eigensolver (VQE) algorithm, a single-reference approach for obtaining ground states, and its state-averaged generalization for computing multiple states at once. We demonstrate for both rectangular and linear H4, as well as for BeH2, that this approach, which we call multistate-objective, Ritz-eigenspectral (MORE)-ADAPT-VQE, can make better use of small excitation manifolds than an analogous method based on a single-reference ADAPT-VQE calculation, q-sc-EOM. In particular, MORE-ADAPT-VQE is able to accurately describe both avoided crossings and crossings between states of different symmetries. In addition to more accurate excited state energies, MORE-ADAPT-VQE can recover accurate transition dipole moments in situations where traditional ADAPT-VQE and q-sc-EOM struggle. These improvements suggest a promising direction toward the use of quantum computers for difficult excited state problems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Viability of perturbative expansion for quantum field theories on neurons

Neural Network (NN) architectures that break statistical independence of parameters have been proposed as a new approach for simulating local quantum field theories (QFTs) [1]. In the infinite neuron number limit, single-layer NNs can exactly reproduce QFT results. This paper examines the viability of this architecture for perturbative calculations of local QFTs for finite neuron number N using scalar ϕ 4 theory in d Euclidean dimensions as an example. We find that the renormalized O(1/N ) corrections to two-and four-point correlators yield perturbative series which are sensitive to the UV cut-off and therefore have a weak convergence. We propose a modification to the architecture to improve this convergence and discuss constraints on the parameters of the theory and the scaling of N which allow us to extract accurate field theory results.

Sen, Srimoyee [Iowa State University, Ames, IA (Un↗
DOE OSTI2022

Measurements of cosmic expansion and growth rate of structure from voids in the Sloan Digital Sky Survey between redshift 0.07 and 1.0

ABSTRACT We present measurements of the anisotropic cross-correlation of galaxies and cosmic voids in data from the Sloan Digital Sky Survey (SDSS) Main Galaxy Sample, Baryon Oscillation Spectroscopic Survey (BOSS), and extended BOSS luminous red galaxy catalogues from SDSS Data Releases 7, 12, and 16, covering the redshift range 0.07 < z < 1.0. As in our previous work analysing voids in subsets of these data, we use a reconstruction method applied to the galaxy data before void finding in order to remove selection biases when constructing the void samples. We report results of a joint fit to the multipole moments of the measured cross-correlation for the growth rate of structure, fσ8(z), and the ratio DM(z)/DH(z) of the comoving angular diameter distance to the Hubble distance, in six redshift bins. For DM/DH, we are able to achieve a significantly higher precision than that obtained from analyses of the baryon acoustic oscillations and galaxy clustering in the same data sets. Our growth rate measurements are of lower precision but still comparable with galaxy clustering results. For both quantities, the results agree well with the expectations for a Λ cold dark matter model. Assuming a flat Universe, our results correspond to a measurement of the matter density parameter $\Omega _\mathrm{m}=0.337^{+0.026}_{-0.029}$. For more general models, the degeneracy directions obtained are consistent with and complementary to those from other cosmological probes. These results consolidate void–galaxy cross-correlation measurements as a pillar of modern observational cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Plant Metabolic Network 16: expansion of underrepresented plant groups and experimentally supported enzyme data

Abstract The Plant Metabolic Network (PMN) is a free online database of plant metabolism available at https://plantcyc.org. The latest release, PMN 16, provides metabolic databases representing >1200 metabolic pathways, 1.3 million enzymes, >8000 metabolites, >10 000 reactions and >15 000 citations for 155 plant and green algal genomes, as well as a pan-plant reference database called PlantCyc. This release contains 29 additional genomes compared with PMN 15, including species listed by the African Orphan Crop Consortium and nonflowering plant species. Furthermore, 52 new enzymes with experimentally supported function information have been included in this release. The single-species databases contain a combination of experimental information from the literature and computationally predicted information obtained through PMN’s database generation pipeline for a single species, while PlantCyc contains only experimental information but for any species within Viridiplantae. PMN is a comprehensive resource for querying, visualizing, analyzing and interpreting omics data with metabolic knowledge. It also serves as a useful and interactive tool for teaching plant metabolism.

Hawkins, Charles (ORCID:0000000312849047)↗
DOE OSTI2025

Expansion of the tmRNA sequence database and new tools for search and visualization

Abstract Transfer–messenger RNA (tmRNA) contributes essential tRNA-like and mRNA-like functions during the process of trans-translation, a mechanism of quality control for the translating bacterial ribosome. Proper tmRNA identification benefits the study of trans-translation and also the study of genomic islands, which frequently use the tmRNA gene as an integration site. Automated tmRNA gene identification tools are available, but manual inspection is still important for eliminating false positives. We have increased our database of precisely mapped tmRNA sequences over 50-fold to 97 179 unique sequences. Group I introns had previously been found integrated within a single subsite within the TψC-loop; they have now been identified at four distinct subsites, suggesting multiple founding events of invasion of tmRNA genes by group I introns, all in the same vicinity. tmRNA genes were found in metagenomic archaeal genomes, perhaps a result of misbinning of bacterial sequences during genome assembly. With the expanded database, we have produced new covariance models for improved tmRNA sequence search and new secondary structure visualization tools.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Respiratory energy demands and scope for demand expansion and destruction

Photosynthesis is the primary energy input to plants, but most plant metabolic processes are powered much or all of the time by ATP and NAD(P)H that come from respiratory oxidation of photosynthetically produced carbohydrates, that is, “dark respiration” (Amthor, 1994). The processes of growth, nutrient uptake and assimilation, active transport, and maintenance are thus all clients of respiration and compete for their share of a respiratory energy budget that is capped by photosynthate income. The economic principle of opportunity cost applies to these clients’ competing demands: spending respiratory energy on process A means missing the benefit of investing that energy in process B (Mahmoudabadi et al., 2019). This principle is key to assessing prospects for crop improvement by metabolic engineering. As de Lorenzo (2015) put it: “metabolism…frames and ultimately resolves whether a given genetic program (existing…or engineered) can be deployed or not.” Foreign or reconfigured native processes bolted on to a crop-plant’s metabolic chassis must compete for respiratory energy with native ones without crashing the energy economy. A proviso on plant carbon budgets is that photosynthetic carbon fixation (“source activity”) can in certain cases increase to meet increased carbon demand (“sink activity”), that is, budget envelopes are not always fixed (Smith et al., 2018). However, as there is some consensus that productivity is most often limited or co-limited by carbon supply (Ainsworth and Long, 2005; Körner, 2015; Sonnewald and Fernie, 2018), we make this our basal assumption in the analyses below.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Computational schemes for the Magnus expansion of the in-medium similarity renormalization group

The in-medium similarity renormalization group (IMSRG) is a popular many-body method used for computations of nuclei. It solves the many-body Schrödinger equation through a continuous unitary transformation of the many-body Hamiltonian. The IMSRG transformation is typically truncated at the normal-ordered two-body level, the IMSRG(2), but recently several approaches have been developed to capture the effects of normal-ordered three-body operators, the IMSRG(3). In particular, a factorized approximation to the IMSRG(3) proposes to capture the leading effects of three-body operators at the same computational cost as the IMSRG(2) approximation. This approach often employs an approximate scheme for solving the IMSRG equations, the so-called hunter-gatherer scheme. In this work, I study the uncertainty associated with this scheme. I find that the hunter-gatherer scheme differs by up to 7MeV for ground-state energies and 0.5MeV for excitation energies from standard IMSRG(2) approaches. These differences are in some cases comparable to the expected size of IMSRG(3) corrections.

39 ≤ A ≤ 58↗
DOE OSTI2020

Thermodynamics of rotating quantum matter in the virial expansion

We characterize the high-temperature thermodynamics of rotating bosons and fermions in two-dimensional (2D) and three-dimensional (3D) isotropic harmonic trapping potentials. In this work, we begin by calculating analytically the conventional virial coefficients $b_n$ for all $\textit{n}$ in the noninteracting case, as functions of the trapping and rotational frequencies. We also report on the virial coefficients for the angular momentum and associated moment of inertia. Using the $b_n$ coefficients, we analyze the deconfined limit (in which the angular frequency matches the trapping frequency) and derive explicitly the limiting form of the partition function, showing from the thermodynamic standpoint how both the 2D and 3D cases become effectively homogeneous 2D systems. To tackle the virial coefficients in the presence of weak interactions, we implement a coarse temporal lattice approximation and obtain virial coefficients up to third order.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗