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At least 1,369 records · Page 76

Database Comm

dbComm is a module for integrating a Python codebase with MongoDB using the PyMongo library. The methods contained are used to connect to a Mongo database and push/pull data.

Jaycox, AdamW↗

Marine and Hydrokinetic (MHK) Databases and Systems

The online information resources included in this fact sheet were developed with support from the U.S. Department of Energy, and are designed to provide the public access to information pertaining to MHK technologies, projects, and research.

MHK databases, technology databases, OpenEI, Tethy↗

deadtrees.earth — An open-access and interactive database for centimeter-scale aerial imagery to uncover global tree mortality dynamics

Excessive tree mortality is a global concern and remains poorly understood as it is a complex phenomenon. We lack global and temporally continuous coverage on tree mortality data. Ground-based observations on tree mortality, e.g., derived from national inventories, are very sparse, and may not be standardized or spatially explicit. Earth observation data, combined with supervised machine learning, offer a promising approach to map overstory tree mortality in a consistent manner over space and time. However, global-scale machine learning requires broad training data covering a wide range of environmental settings and forest types. Low altitude observation platforms (e.g., drones or airplanes) provide a cost-effective source of training data by capturing high-resolution orthophotos of overstory tree mortality events at centimeter-scale resolution. Here, we introduce deadtrees.earth, an open-access platform hosting more than two thousand centimeter-resolution orthophotos, covering more than 1,000,000 ha, of which more than 58,000 ha are manually annotated with live/dead tree classifications. This community-sourced and rigorously curated dataset can serve as a comprehensive reference dataset to uncover tree mortality patterns from local to global scales using space-based Earth observation data and machine learning models. This will provide the basis to attribute tree mortality patterns to environmental changes or project tree mortality dynamics to the future. The open nature of deadtrees.earth, together with its curation of high-quality, spatially representative, and ecologically diverse data will continuously increase our capacity to uncover and understand tree mortality dynamics.

Citizen science↗

Local and statistical maps of lightning-generated wave power density estimated at the Van Allen Probes footprints from the World-Wide Lightning Location Network database

We introduce a new method that uses the World-Wide Lightning Location Network (WWLLN) to estimate both the local and the drift lightning power density at the Van Allen Probes footprints during 4.3 years (~2x10 8 strokes.). The ratio of the drift power density to the local power density defines a time-resolved WWLLN-based model of lightning-generated wave (LGW) power density ratio, $\mathcal{R_{WWLLN}}$. $\mathcal{R_{WWLLN}}$ is computed every ~34s. This ratio multiplied by the time-resolved LGW intensity measured by the Probes allows direct computation of pitch angle diffusion coefficients used in radiation belts codes. According to Statistical analysis, the median power density ratio is $\mathcal{\hat{R}_{WWLLN}}$ = 0.3 - 4 over the Americas. Elsewhere, $\mathcal{\hat{R}_{WWLLN}}$ > 1 in general. Over oceans, $\mathcal{\hat{R}_{WWLLN}}$ is larger than ~10 and varies with season (x2.5 from winter to summer). The yearly median $\mathcal{\hat{R}_{WWLLN}}$ decays as $\mathcal{\hat{R}_{WWLLN}}$~9.9/L 0.91 . The strong geographical and temporal variation should be kept in assessing effects in space. $\mathcal{R_{WWLLN}}$> 1 suggests significant LGW effects in the inner belt.

58 GEOSCIENCES↗

Cric searchable image database as a public platform for conventional pap smear cytology data

Amidst the current health crisis and social distancing, telemedicine has become an important part of mainstream of healthcare, and building and deploying computational tools to support screening more efficiently is an increasing medical priority. The early identification of cervical cancer precursor lesions by Pap smear test can identify candidates for subsequent treatment. However, one of the main challenges is the accuracy of the conventional method, often subject to high rates of false negative. While machine learning has been highlighted to reduce the limitations of the test, the absence of high-quality curated datasets has prevented strategies development to improve cervical cancer screening. The Center for Recognition and Inspection of Cells (CRIC) platform enables the creation of CRIC Cervix collection, currently with 400 images (1,376 × 1,020 pixels) curated from conventional Pap smears, with manual classification of 11,534 cells. This collection has the potential to advance current efforts in training and testing machine learning algorithms for the automation of tasks as part of the cytopathological analysis in the routine work of laboratories.

59 BASIC BIOLOGICAL SCIENCES↗

Landscape analysis of environmental data sources for linkage with SEER cancer patients database

Abstract One of the challenges associated with understanding environmental impacts on cancer risk and outcomes is estimating potential exposures of individuals diagnosed with cancer to adverse environmental conditions over the life course. Historically, this has been partly due to the lack of reliable measures of cancer patients’ potential environmental exposures before a cancer diagnosis. The emerging sources of cancer-related spatiotemporal environmental data and residential history information, coupled with novel technologies for data extraction and linkage, present an opportunity to integrate these data into the existing cancer surveillance data infrastructure, thereby facilitating more comprehensive assessment of cancer risk and outcomes. In this paper, we performed a landscape analysis of the available environmental data sources that could be linked to historical residential address information of cancer patients’ records collected by the National Cancer Institute’s Surveillance, Epidemiology, and End Results Program. The objective is to enable researchers to use these data to assess potential exposures at the time of cancer initiation through the time of diagnosis and even after diagnosis. The paper addresses the challenges associated with data collection and completeness at various spatial and temporal scales, as well as opportunities and directions for future research.

60 APPLIED LIFE SCIENCES↗

In Situ Visualization and Production of Extract Databases

Simulations running at high concurrency on HPC systems generate large volumes of data that are impractical to write to disk due to time and storage constraints. Applications often adapt by saving data infrequently, resulting in datasets with poor temporal resolution. This can make datasets difficult to interpret during post hoc visualization and analysis, or worse, it can lead to lost science. In Situ visualization and analysis can enable efficient production of small data products such as rendered images or surface extracts that consist of polygonal geometry plus fields. These data products are far smaller than their source data and can be processed much more economically in a traditional post hoc workflow using far fewer computational resources. We used the SENSEI and Libsim in situ infrastructures to implement rendering workflow and surface data extraction workflows in the AVF-LESLIE combustion code. Finally, these workflows were then demonstrated at high levels of concurrency and showed significant data reductions and limited impact on the simulation runtime.

97 MATHEMATICS AND COMPUTING↗

Southeast Regional CO 2 Utilization and Storage Acceleration Partnership (SECARB-USA): Results of Existing CO 2 Source and Sink Databases Analysis

The “Southeast Regional CO 2 Utilization and Storage Acceleration Partnership” (SECARB-USA) project supported the U.S. Department of Energy (DOE) Office of Fossil Energy's (FE) mission to help the United States meet its need for secure, affordable, and environmentally sound fossil energy supplies by utilizing the advancements made since 2003 by the Regional Carbon Sequestration Partnership (RCSP) Initiative to continue to identify and address knowledge gaps.

42 ENGINEERING↗

Theoretical nuclear database for high-energy, heavy-ion (HZE) transport

Theoretical methods for estimating high-energy, heavy-ion (HZE) particle absorption and fragmentation cross-sections are described and compared with available experimental data. Differences between theory and experiment range from several percent for absorption cross-sections up to about 25%-50% for fragmentation cross-sections.

NASA Discipline Radiation Health↗