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At least 1,369 records · Page 76

ExaFEL: extreme-scale real-time data processing for X-ray free electron laser science

ExaFEL is an HPC-capable X-ray Free Electron Laser (XFEL) data analysis software suite for both Serial Femtosecond Crystallography (SFX) and Single Particle Imaging (SPI) developed in collaboration with the Linac Coherent Lightsource (LCLS), Lawrence Berkeley National Laboratory (LBNL) and Los Alamos National Laboratory. ExaFEL supports real-time data analysis via a cross-facility workflow spanning LCLS and HPC centers such as NERSC and OLCF. Our work therefore constitutes initial path-finding for the US Department of Energy's (DOE) Integrated Research Infrastructure (IRI) program. We present the ExaFEL team's 7 years of experience in developing real-time XFEL data analysis software for the DOE's exascale supercomputers. We present our experiences and lessons learned with the Perlmutter and Frontier supercomputers. Furthermore we outline essential data center services (and the implications for institutional policy) required for real-time data analysis. Finally we summarize our software and performance engineering approaches and our experiences with NERSC's Perlmutter and OLCF's Frontier systems. This work is intended to be a practical blueprint for similar efforts in integrating exascale compute resources into other cross-facility workflows.

59 BASIC BIOLOGICAL SCIENCES↗

Effects of prolonged acceleration with or without clinostat rotation on seedlings of Arabidopsis thaliana (L.) Heynh

Three 21-day tests of the effects of chronic centrifugation were carried out on populations of Arabidopsis thaliana. In addition to 1 g the resultant g-forces tested were: 2,4,6,8,16, and 20 g. Observed end points included gross morphological characters such as size of plant organs and, at the other extreme, features of sub-cellular structure and ultrastructure. Plants were grown on banks of clinostats. The acceleration vector was directed either parallel with the plants' axes or transverse to the axes. Plant responses to chronic axial acceleration and to transverse acceleration with clinostated plants were determined. From the data obtained it was possible in some cases: (1) to determine the g-functions of specific plant developmental characters; (2) to extrapolate those functions to the hypothetical value at zero g in order to predict (tentatively) the morphology of a plant grown in space, (3) to describe morphological effects of clinostat rotation, (4) to determine which of those effects was influenced by the prevailing g-force, and (5) to put to direct test the assumption that clinostat rotation nullifies or compensates for the influence of gravity.

Brown, A. H.↗

Correlating downward flame spread rates for thick fuel beds

Flame spread rates are presented for polymethylmethacrylate fuel beds as a function of gravitational acceleration and ambient pressure and oxygen concentration. The data are correlated by plotting a dimensionless spread rate that is a measure of the heat transferred forward of the flame, required to sustain the flame, compared to the maximum possible forward heat transfer against a Damkoehler number. The latter parameter indicates the approach of the flame to its maximum temperature, where the maximum possible forward heat transfer occurs, such that the dimensionless spread rate approaches unity at large Damkoehler number. Surface regression effects on the flame spread process are incorporated into the dimensionless spread rate, and the final correlation is independent of bed thickness.

Altenkirch, R. A.↗

Suprathermal ions upstream from interplanetary shocks

Low energy (10 eV-30 keV) observations of suprathermal ions ahead of outward propagating interplanetary shock waves (ISQ) are reported. The data were taken with the fast plasma experiment on ISEE 1 and 2 during 17 events. Structure was more evident in the suprathermal ion distribution in the earth bow shock region than in the upstream region. Isotropic distributions were only observed ahead of ISW, although field alignment, kidney-bean distributions, ion shells in velocity space and bunches of gyrating ions were not. The data suggest that the solar wind ions are accelerated to suprathermal energies in the vicinity of the shocks, which feature low and subcritical Mach numbers at 1 AU.

Gosling, J. T.↗

500 TeV gamma rays from Hercules X-1

A signal (chance probability = .0002) with the 1.24 s period of Hercules X-1 has been observed using the Utah Fly's Eye. The signal's relatively long period and high shower energy conflict with some popular models of particle acceleration by pulsars. Optical and X-ray data suggest a picture in which energetic particles produce multi-TeV gamma rays by collisions with Hercules X-1's accretion disk.

Baltrusaitis, R. M.↗

Propagation of cosmic rays and new evidence for distributed acceleration

The origin and propagation of cosmic rays in terms of conventional and supplementary newer assumptions were explored. Cosmic rays are considered to be accelerated by supernoava shock waves and to traverse clouds in the source region. After rigidity-dependent escape from these clouds into interstellar space, cosmic rays are further accelerated by the weakened shocks of old supernova remnants and then pass through additional material. The distributed acceleration hypothesis is discussed with emphasis on recent data on the abundances of cosmic-ray isotopes of N above 1 GeV/u and of He near 6 GeV/u.

Silberberg, R.↗

Evidence for mass-loading of the Venus magnetosheath

The observed magnetic field configuration in the Venus magnetosheath contains information about the solar wind mass-loading processes occurring as a result of the extension of the neutral atmosphere into the magnetosheath. In this paper, magnetic field signatures of various mass-loading processes are discussed and experimental results from the Pioneer Venus Orbiter magnetometer experiment are examined for evidence of these signatures. The data suggest that the -V(bar)XB(bar) acceleration process, stochastic pickup of ionospheric ions, and J(bar)XB(bar) force 'scavenging' at the ionopause all occur at various times.

Luhmann, J. G.↗

Vertical drop test of a transport fuselage section located aft of the wing

A 12-foot long Boeing 707 aft fuselage section with a tapering cross section was drop tested at the NASA Langley Research Center to measure structural, seat, and occupant response to vertical crash laods and to provide data for nonlinear finite element modeling. This was the final test in a series of three different transport fuselage sections tested under identical conditions. The test parameters at impact were: 20 ft/s velocity, and zero pitch, roll, and yaw. In addition, the test was an operational shock test of the data acquisition system used for the Controlled Impact Demonstration (CID) of a remotely piloted Boeing 720 that was crash tested at NASA Ames Dryden Flight Research Facility on December 1, 1984. Post-test measurements of the crush showed that the front of the section (with larger diameter) crushed vertically approximately 14 inches while the rear crushed 18 inches. Analysis of the data traces indicate the maximum peak normal (vertical) accelerations at the bottom of the frames were approximately 109 G at body station 1040 and 64 G at body station 1120. The peak floor acceleration varied from 14 G near the wall to 25 G near the center where high frequency oscillations of the floor were evident. The peak anthropomorphic dummy pelvis normal (vertical) acceleration was 19 G's.

Fasanella, E. L.↗

Argon ions injected parallel and perpendicular to the magnetic field

Preliminary results are reported of measurements obtained with the 0-10-kHz electric-field plasma-wave receivers and single-particle ion detectors of the ARCS-3 sounding-rocket payload over the auroral oval on February 10, 1985, after downward/field-parallel or transverse-spiral injection of Ar ions from the accelerator subpayload (separating itself at 2.3 m/s). The data are presented graphically and briefly characterized. The waves induced by the parallel injections are found to be much weaker than those induced by the perpendicular injections. In addition to the expected response to the Ar beam, an ion flux at pitch angle 90 deg was detected during the second parallel injection.

Erlandson, R. E.↗

The dynamics of global positioning system orbits and the determination of precise ephemerides

The suggestion made on the basis of the analytical orbit perturbation theory that the errors in the ephemerides of the GPS satellites are due mostly to resonant effects that can be corrected by adjusting a few parameters in a empirical acceleration formula is tested using simulations and actual data analysis. Data from the Spring 1985 Experiment were used to calculate improved ephemerides, and these ephemerides were used in the estimation of the coordinates of GPS stations within the continental United States, previously positioned with VLBI. The results of this test support the idea that the errors are mostly of a resonant nature and can be corrected.

Colombo, Oscar L.↗

Entry and acceleration of He(+) in the low latitude boundary layer

AMPTE/CCE He(+) and H(+) observations in the magnetosphere, low latitude boundary layer, and magnetosheath reveal that cold plasmaspheric He(+) distributions from the outer magnetosphere convect into the low latitude boundary layer. In the boundary layer, the cold He(+) is accelerated and heated to a few keV. The data are resolved in sufficient detail to show that the process of pickup of the cold He(+) distribution in the boundary layer H(+) flow may not be adequate to explain the observed He(+) distributions in the boundary layer.

Fuselier, S. A.↗

Interoperability among Space Station Freedom data systems - A field test of standards

A development status evaluation is presented for NASA efforts toward the achievement of interoperability among Space Station Freedom (SSF) data systems, despite the complexity created by the number and wide distribution of such systems, the intensive international participation, and the use of time-phased development cycles. Four areas have been identified as essential: communications interoperability, data interoperability, and crew and payload interface interoperability. Accelerated efforts are needed to define and refine detailed interface designs before developments by each of the SSF's international partners come to take fundamentally incompatible courses.

Whitelaw, Virginia A.↗

Supernovae and supernova remnants at high energies

The physical phenomena that are observable with X- and gamma-ray observations of supernovae are discussed with respect to possible high-energy astrophysics experiments. Prompt photospheric emission and its echo are discussed, supernova radioactivity and neutron star effects are examined, and circumstellar and interstellar interaction are reviewed. The primary uncertainties are found to be the hardening of the spectrum by non-LTE effects and the amount of absorption of the radiation from the initial soft X-ray burst. The radioactivity in supernovae is theorized to lead to gamma-ray lines and continuum emission unless the event is low-mass type II. Gamma-ray observations are proposed to examine the efficiency of particle acceleration, and high-resolution spectroscopy can provide data regarding ionization, temperature, composition, and velocities of the X-ray-emitting gas.

Chevalier, Roger A.↗

Investigation of starting transients in the thermally choked ram accelerator

An experimental investigation of the starting transients of the thermally choked ram accelerator is presented in this paper. Construction of a highly instrumented tube section and instrumentation inserts provide high resolution experimental pressure, luminosity, and electromagnetic data of the starting transients. Data obtained prior to and following the entrance diaphragm show detailed development of shock systems in both combustible and inert mixtures. With an evacuated launch tube, starting the diffuser is possible at any Mach number above the Kantrowitz Mach number. The detrimental effects and possible solutions of higher launch tube pressures and excessive obturator leakage (blow-by) are discussed. Ignition of a combustible mixture is demonstrated with both perforated and solid obturators. The relative advantages and disadvantages of each are discussed. Data obtained from these starting experiments enhance the understanding of the ram accelerator, as well as assist in the validation of unsteady, chemically reacting CFD codes.

Burnham, E. A.↗

Studies of Vestibular Neurons in Normal, Hyper- and Hypogravity

During the past year, pre-, in- and postflight studies were conducted in association with the Axon project for Bion 10 (Cosmos 2229). Recordings were made during pre- and postflight studies, from 118 horizontal semicircular canal afferents and 27 vestibular nucleus neurons in 7 rhesus monkeys; 137 pulse rotation protocols alone were executed (548 acceleration and deceleration responses were curve fit). Usable data was obtained from 127 horizontal afferents concerning their spontaneous discharge. Curve fits and analysis was made of sinusoidal and sum of sinusoidal responses from 42 and 35 horizontal afferents, respectively. Also recordings were made from neurons inflight from the two flight animals. The mean spontaneous rate varied from 128 spikes/sec. during preflight to 92 spikes/sec during postflight (day 5) - a change of 28%. In direct contrast to the results of Cosmos 2044, the best fitted neural adaptation operator (k) and the gain of the pulse response were decreased during post flight when compared to preflight. Surprisingly, the best fitted gain and k values for the sum of sines were slightly elevated during post flight tests. The gain and phase of single sine responses were compared for pre- and post flight tests and compared to a larger population of afferents. In contrast to Cosmos 2044 results where on the first day of post flight testing the gains of the best fitted sine response were skewed toward the higher values of the Miles and Braitman distribution, the gain of the best fitted sine responses during the first day of post flight testing (day 2) during Cosmos 2229 were exactly on the mode of the Miles and Braitman distribution. Thus, at least for the periodic stimuli, (pulses and sine waves) we found no change in gain and neural adaptation during post flight testing following Cosmos 2229. This conclusion is different from the one derived following the Cosmos 2044 flight. Cosmos flight 2229 differed from Cosmos flight 2044 in several significant ways: For example, during preflight, (1) The animals preflight training was different (less well trained on the gaze task) and (2) the animals were exposed to more experimental manipulations (surgical and rotational). Inflight, (1) the animals were required to make a pointing gesture (motor response) in association with eye movements to obtain reward, (2) the inflight diet was different (more balanced), (3) the feeder for one of the animals clogged following 9 days of flight resulting in evident dehydration and probably less head motion exposure in that monkey and (4) there was limited video taping of the monkeys in space. During postflight, (1) we were unable to test the flight animals until 26 hours postflight as compared to 14.5 hours during Cosmos 2044, (2) the animals received significantly more exposure to motion stimuli during postflight testing than during Cosmos 2044. These differences in the vestibular environment will require analysis of several parameters other than just neural and eye movement responses. For example, computer programs will have to be written and used to recover and quantify the number of head movements made by each animal during flight. This activity is critical to the production of neural adaptation and increased gain.

Correia, Manning J.↗

Observations of Gas-Liquid Flows Through Contractions in Microgravity

Tests were conducted for an air-water flow through two sudden contractions aboard the NASA DC-9 low gravity aircraft. Flow rate, residual accelerations, void fraction, film thickness, and pressure drop data were recorded and flow visualization at 250 images per second were recorded. Some preliminary results based on the flow visualization data are presented for bubbly, slug and annular flow.

McQuillen, John↗

Application of Wind Tunnel Free-Flight Technique for Wake Vortex Encounters

A wind tunnel investigation was conducted in the Langley 30- by 60-Foot Tunnel to assess the free-flight test technique as a tool in research on wake vortex encounters. A typical 17.5-percent scale business-class jet airplane model was flown behind a stationary wing mounted in the forward portion of the wind tunnel test section. The span ratio (model span-generating wingspan) was 0.75. The wing angle of attack could be adjusted to produce a vortex of desired strength. The test airplane model was successfully flown in the vortex and through the vortex for a range of vortex strengths. Data obtained included the model airplane body axis accelerations, angular rates, attitudes, and control positions as a function of vortex strength and relative position. Pilot comments and video records were also recorded during the vortex encounters.

Brandon, Jay M.↗

Realistic NLTE Radiative Transfer for Modeling Stellar Winds

This NASA grant supported the development of codes to solve the non-LTE multi-level spherical radiative transfer problem in the presence of velocity fields. Much of this work was done in collaboration with Graham Harper (CASA, University of Colorado). These codes were developed for application to the cool, low-velocity winds of evolved late-type stars. Particular emphasis was placed on modeling the wind of lambda Velorum (K4 lb), the brightest K supergiant in the sky, based on extensive observations of the ultraviolet spectrum with the HST/GHRS from GO program 5307. Several solution techniques were examined, including the Eddington factor Approach described in detail by Bennett & Harper (1997). An Eddington factor variant of Harper's S-MULTI code (Harper 1994) for stationary atmospheres was developed and implemented, although full convergence was not realized. The ratio of wind terminal velocity to turbulent velocity is large (approx. 0.3-0.5) in these cool star winds so this assumption of stationarity provides reasonable starting models. Final models, incorporating specified wind laws, were converged using the comoving CRD S-MULTI code. Details of the solution procedure were published by Bennett & Harper (1997). Our analysis of the wind of lambda Vel, based on wind absorption superimposed on chromospheric emission lines in the ultraviolet, can be found in Carpenter et al. (1999). In this paper, we compare observed wind absorption features to an exact CRD calculation in the comoving frame, and also to a much quicker, but approximate, method using the SEI (Sobolev with Exact Integration) code of Lamers, Cerruti-Sola, & Perinotto (1987). Carpenter et al. (1999) provide detailed comparisons of the exact CRD and approximate SEI results and discuss when SEI is adequate to use for computing wind line profiles. Unfortunately, the observational material is insufficient to unambiguously determine the wind acceleration law for lambda Vel. Relatively few unblended Fe II lines of optical depth sensitive to the wind acceleration region are present in the existing HST/GHRS data set. Most of the Fe II lines are either too optically thick (resulting in a board, black wind absorption profile) or too optically thin (resulting in no wind absorption feature present). Also, most of the ultraviolet spectra obtained from HST GO-5307 was at medium resolution (R approx. 40,000, corresponding to a velocity resolution of 7.5 km/s). This is simply inadequate to resolve the turbulence in the outer wind; a key parameter in theoretical wind models. We can now say that an unambiguous determination of the wind velocity law in lambda Vel will require complete coverage of the ultraviolet spectrum at high dispersion (R approx. 10(exp 5), or 3 km/s). This is now feasible usin, the STIS echelle spectrograph on-board HST.

Bennett, Philip D.↗