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At least 1,351 records · Page 75

Structural insight into metallocofactor maturation in carbon monoxide dehydrogenase

The nickel-dependent carbon monoxide dehydrogenase (CODH) employs a unique heterometallic nickel–iron–sulfur cluster, termed the C-cluster, to catalyze the interconversion of CO and CO 2 . Like other complex metalloenzymes, CODH requires dedicated assembly machinery to form the fully intact and functional C-cluster. In particular, nickel incorporation into the C-cluster depends on the maturation factor CooC; however, the mechanism of nickel insertion remains poorly understood. Here, we compare X-ray structures (1.50–2.48 Å resolution) of CODH from Desulfovibrio vulgaris ( Dv CODH) heterologously expressed in either the absence ( Dv CODH –CooC ) or presence ( Dv CODH +CooC ) of co-expressed CooC. Here, we find that the C-cluster of Dv CODH –CooC is fully loaded with iron but does not contain any nickel. Interestingly, the so-called unique iron ion (Fe u ) occupies both its canonical site (80% occupancy) and the nickel site (20% occupancy), with addition of reductant causing further mismetallation of the nickel site (60% iron occupancy). We also demonstrate that a Dv CODH variant that lacks a surface-accessible iron–sulfur cluster (the D-cluster) has a C-cluster that is also replete in iron but lacks nickel, despite co-expression with CooC. In this variant, all Fe u is in its canonical location, and the nickel site is empty. This D-cluster–deficient CODH is inactive despite attempts to reconstitute it with nickel. Taken together, these results suggest that an empty nickel site is not sufficient for nickel incorporation. Based on our findings, we propose a model for C-cluster assembly that requires both CooC and a functioning D-cluster, involves precise redox-state control, and includes a two-step nickel-binding process.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A distributed decision framework for building clusters with different heterogeneity settings

In the past few decades, extensive research has been conducted to develop operation and control strategy for smart buildings with the purpose of reducing energy consumption. Besides studying on single building, it is envisioned that the next generation buildings can freely connect with one another to share energy and exchange information in the context of smart grid. It was demonstrated that a network of connected buildings (aka building clusters) can significantly reduce primary energy consumption, improve environmental sustainability and building s resilience capability. However, an analytic tool to determine which type of buildings should form a cluster and what is the impact of building clusters heterogeneity based on energy profile to the energy performance of building clusters is missing. To bridge these research gaps, we propose a self-organizing map clustering algorithm to divide multiple buildings to different clusters based on their energy profiles, and a homogeneity index to evaluate the heterogeneity of different building clusters configurations. In addition, a bi-level distributed decision model is developed to study the energy sharing in the building clusters. To demonstrate the effectiveness of the proposed clustering algorithm and decision model, we employ a dataset including monthly energy consumption data for 30 buildings where the data is collected every 15 min. It is demonstrated that the proposed decision model can achieve at least 13% cost savings for building clusters. Furthermore, the results show that the heterogeneity of energy profile is an important factor to select battery and renewable energy source for building clusters, and the shared battery and renewable energy are preferred for more heterogeneous building clusters.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

The physical implications of an isothermal model for the hot intracluster medium

X-ray fluxes from HEAO-1 A2 and Einstein Imaging Proportional Counter (IPC) observations of clusters of galaxies were used to constrain the parameter beta in the isothermal surface brightness profile. Beta is found primarily to have values between .50 and .75 for 15 clusters. Eight of these objects have values of beta previously measured using imaging observations. For these clusters good agreement is found with the values reported here implying that this profile is a good description of the surface brightness out to 8 to 10 core radii. The total gas mass and radial distribution (assuming spherical symmetry) within the cluster resulting from the isothermal model imply an extended halo of hot gas which has 30 to 60% of the virial mass for some clusters.

Hendriksen, M. J.↗

Isospin dependence of cluster recognition and multifragment production

The isospin dependent quantum molecular dynamics (IQMD) model is used to study the role of isospin dependent clustering mechanism in Au+Au collisions at 100 and 600 MeV/A. A significant influence of clustering mechanism via isospin dependent spatial constraints was clearly seen on the fragment observables such as persistence, binding energy and the mean multiplicity of intermediate mass fragments. The model calculations using isospin dependent clusterization approach are able to describe the ALADiN multifragmentation data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Modeling active galactic nucleus feedback in cool-core clusters: The formation of cold clumps

We perform high-resolution (15-30 pc) adaptive mesh simulations to study the impact of momentum-driven active galactic nucleus (AGN) feedback in cool-core clusters, focusing in this paper on the formation of cold clumps. The feedback is jet-driven with an energy determined by the amount of cold gas within 500 pc of the super-massive black hole. When the intracluster medium in the core of the cluster becomes marginally stable to radiative cooling, with the thermal instability to the free-fall timescale ratio t{sub TI}/t{sub ff} < 3-10, cold clumps of gas start to form along the propagation direction of the AGN jets. By tracing the particles in the simulations, we find that these cold clumps originate from low entropy (but still hot) gas that is accelerated by the jet to outward radial velocities of a few hundred km s{sup –1}. This gas is out of hydrostatic equilibrium and so can cool. The clumps then grow larger as they decelerate and fall toward the center of the cluster, eventually being accreted onto the super-massive black hole. The general morphology, spatial distribution, and estimated Hα morphology of the clumps are in reasonable agreement with observations, although we do not fully replicate the filamentary morphology of the clumps seen in the observations, probably due to missing physics.

79 ASTRONOMY AND ASTROPHYSICS↗

The luminosity function for stars with minus 0.6 less than or equal to M (sub nu) less than or equal to 6.5 in the globular cluster M30: Is there a problem with stellar evolution models?

The V band luminosity function (LF) for stars ranging from the tip of the giant branch to approximately 2.5 mag fainter than the main-sequence turnoff (MSTO) in M30 (=NGC 7099, GC 2137-234) is derived from CCD observations. Comparison with the theoretical LFs of Bergbusch & VandenBerg (1992) for (M/H) = -2, 16 Gyr models shows discrepancies which can be described either of two ways: (1) If the observations are normalized to the models over a few magnitudes fainter than the MSTO, then there is an excess (N (sub obs) greater than N(sub predicted)) of subgiant stars within 0.5 mag of the MSTO at the level of 4.8 sigma and an excess of stars (approximately 20%) compared to the models all along the giant branch. (2) If the normalization is made to match predicted and observed numbers of stars on the giant branch, then there is a discrepancy between models and observations in the sense that there is a broad depression in the observed LF fainter than the MSTO that is not present in the models. Consideration of LFs generated from 12 Gyr models or models adjusted to a shorter (m - M)(sub nu) = 14.5) distance modulus diminishes the magnitude of some of these discrepancies but introduces other mismatches between the observations and models. LFs constructed from stellar models that have 10% of the stellar mass in an isothermal core qualitatively match the observations better than the 'standard' models.

Bolte, Michael↗

A simulation of the intracluster medium with feedback from cluster galaxies

We detail method and report first results from a three-dimensional hydrodynamical and N-body simulation of the formation and evolution of a Coma-sized cluster of galaxies, with the intent of studying the history of the hot, X-ray emitting intracluster medium. Cluster gas, galaxies, and dark matter are included in the model. The galaxies and dark matter fell gravitational forces; the cluster gas also undergoes hydrodynamical effects such as shock heating and PdV work. For the first time in three dimensions, we include modeling of ejection of processed gas from the simulated galaxies by winds, including heating and heavy element enrichment. For comparison, we employ a `pure infall' simulation using the same initial conditions but with no galaxies or winds. We employ an extreme ejection history for galactic feedback in order to define the boundary of likely models. As expected, feedback raises the entropy of the intracluster gas, preventing it from collapsing to densities as high as those attained in the infall model. The effect is more pronounced in subclusters formed at high redshift. The cluster with feedback is always less X-ray luminous, but experiences more rapid luminosity evolution, than the pure infall cluster. Even employing an extreme ejection model, the final gas temperature is only approximately 15% larger than in the infall model. The radial temperature profile is very nearly isothermal within 1.5 Mpc. The cluster galaxies in the feedback model have a velocity dispersion approximately 15% lower than the dark matter. This results in the true ratio of specific energies in galaxies to gas being less than one, beta(sub spec) approximately 0.7. The infall model predicts beta(sub spec) approximately 1.2. Large excursions in these values occur over time, following the complex dynamical history of the cluster. The morphology of the X-ray emission is little affected by feedback. The emission profiles of both clusters are well described by the standard beta-model with beta(sub fit) approximately equal to 0.7 - 0.9. X-ray mass estimates based on the assumptions of hydrostatic equilibrium and the applicability of the beta-model are quite accurate in both cases. A strong, radial iron abundance gradient is present, which develops as a consequence of the steepening of the galaxy density profile over time. Spectroscopic observations using nonimaging detectors with wide (approximately 45 min) fields of view dramatically smear the gradient. Observations with arcminute resolution, made available with the ASCA satellite, would readily resolve the gradient.

Metzler, Christopher A.↗

YOUNG STELLAR CLUSTERS WITH A SCHUSTER MASS DISTRIBUTION. I. STATIONARY WINDS

Hydrodynamic models for spherically symmetric winds driven by young stellar clusters with a generalized Schuster stellar density profile are explored. For this we use both semi-analytic models and one-dimensional numerical simulations. We determine the properties of quasi-adiabatic and radiative stationary winds and define the radius at which the flow turns from subsonic to supersonic for all stellar density distributions. Strongly radiative winds significantly diminish their terminal speed and thus their mechanical luminosity is strongly reduced. This also reduces their potential negative feedback into their host galaxy interstellar medium. The critical luminosity above which radiative cooling becomes dominant within the clusters, leading to thermal instabilities which make the winds non-stationary, is determined, and its dependence on the star cluster density profile, core radius, and half-mass radius is discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

Spatial Distribution of Large Cloud Drops

By analyzing aircraft measurements of individual drop sizes in clouds, we have shown in a companion paper (Knyazikhin et al., 2004) that the probability of finding a drop of radius r at a linear scale l decreases as l(sup D(r)) where 0 less than or equal to D(r) less than or equal to 1. This paper shows striking examples of the spatial distribution of large cloud drops using models that simulate the observed power laws. In contrast to currently used models that assume homogeneity and therefore a Poisson distribution of cloud drops, these models show strong drop clustering, the more so the larger the drops. The degree of clustering is determined by the observed exponents D(r). The strong clustering of large drops arises naturally from the observed power-law statistics. This clustering has vital consequences for rain physics explaining how rain can form so fast. It also helps explain why remotely sensed cloud drop size is generally biased and why clouds absorb more sunlight than conventional radiative transfer models predict.

Marshak, A.↗

A quasi-static approach to structure formation in black hole universes

Motivated by the existence of hierarchies of structure in the Universe, we present four new families of exact initial data for inhomogeneous cosmological models at their maximum of expansion. These data generalise existing black hole lattice models to situations that contain clusters of masses, and hence allow the consequences of cosmological structures to be considered in a well-defined and non-perturbative fashion. The degree of clustering is controlled by a parameter λ, in such a way that for λ ∼ 0 or 1 we have very tightly clustered masses, whilst for λ ∼ 0.5 all masses are separated by cosmological distance scales. We study the consequences of structure formation on the total net mass in each of our clusters, as well as calculating the cosmological consequences of the interaction energies both within and between clusters. The locations of the shared horizons that appear around groups of black holes, when they are brought sufficiently close together, are also identified and studied. We find that clustering can have surprisingly large effects on the scale of the cosmology, with models that contain thousands of black holes sometimes being as little as 30% of the size of comparable Friedmann models with the same total proper mass. This deficit is comparable to what might be expected to occur from neglecting gravitational interaction energies in Friedmann cosmology, and suggests that these quantities may have a significant influence on the properties of the large-scale cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗

A Novel Machine Learning Approach to Disentangle Multitemperature Regions in Galaxy Clusters

The hot intracluster medium (ICM) surrounding the heart of galaxy clusters is a complex medium that comprises various emitting components. Although previous studies of nearby galaxy clusters, such as the Perseus, the Coma, or the Virgo cluster, have demonstrated the need for multiple thermal components when spectroscopically fitting the ICM’s X-ray emission, no systematic methodology for calculating the number of underlying components currently exists. In turn, underestimating or overestimating the number of components can cause systematic errors in the emission parameter estimations. In this paper, we present a novel approach to determining the number of components using an amalgam of machine learning techniques. Synthetic spectra containing a various number of underlying thermal components were created using well-established tools available from the Chandra X-ray Observatory. The dimensions of the training set was initially reduced using principal component analysis and then categorized based on the number of underlying components using a random forest classifier. Our trained and tested algorithm was subsequently applied to Chandra X-ray observations of the Perseus cluster. Our results demonstrate that machine learning techniques can efficiently and reliably estimate the number of underlying thermal components in the spectra of galaxy clusters, regardless of the thermal model (MEKAL versus APEC). We also confirm that the core of the Perseus cluster contains a mix of differing underlying thermal components. We emphasize that although this methodology was trained and applied on Chandra X-ray observations, it is readily portable to other current (e.g., XMM-Newton, eROSITA) and upcoming (e.g., Athena, Lynx, XRISM) X-ray telescopes. The code is publicly available at https://github.com/XtraAstronomy/Pumpkin.

79 ASTRONOMY AND ASTROPHYSICS↗

The X-ray morphology of the Perseus cluster of galaxies

Results are reported for a sounding-rocket measurement of the spatial distribution of the X-ray flux from the Perseus cluster of galaxies in the range from 0.5 to 4.5 keV. Two scans (N-S and E-W) were made along the line of galaxies extending from NGC 1275 to IC 310. A flux maximum is observed which is coincident with the location of NGC 1275, but the X-ray distribution is shown to exclude just a point source. More broadening is detected in the E-W direction, and a comparison with other X-ray and optical data indicates a complex structure for the cluster. A three-component model is proposed in which the total X-ray luminosity of the cluster may be a combination of contributions from a central point source (NGC 1275), a condensed disk-like region oriented edge-on along the line of galaxies, and a more symmetric region extending out to at least 1 deg.

Wolff, R. S.↗

From Coexpression to Coregulation: An Approach to Inferring Transcriptional Regulation Among Gene Classes from Large-Scale Expression Data

We provide preliminary evidence that existing algorithms for inferring small-scale gene regulation networks from gene expression data can be adapted to large-scale gene expression data coming from hybridization microarrays. The essential steps are (I) clustering many genes by their expression time-course data into a minimal set of clusters of co-expressed genes, (2) theoretically modeling the various conditions under which the time-courses are measured using a continuous-time analog recurrent neural network for the cluster mean time-courses, (3) fitting such a regulatory model to the cluster mean time courses by simulated annealing with weight decay, and (4) analysing several such fits for commonalities in the circuit parameter sets including the connection matrices. This procedure can be used to assess the adequacy of existing and future gene expression time-course data sets for determining transcriptional regulatory relationships such as coregulation.

Mjolsness, Eric↗

Minicharged particles from the Sun: a cutting-edge bound

We study the impact on the Sun of an exotic energy-loss channel caused by plasmon decay into fermionic minicharged particles with charge ε e and mass m{sub f}. We compare solar models with this extra emission to helioseismological and neutrino data, obtaining a bound ε < 2.2 × 10{sup −14} (95% CL) for m{sub f} ∼< 25 eV. Our result is comparable to previous limits from the cooling of globular cluster stars, while at the same time it is better understood and takes theoretical and observational errors into account.

79 ASTRONOMY AND ASTROPHYSICS↗

The spectra of the multicharged argon hollow ions: Observation, modeling and using for diagnostics of the early stage of the heating of clusters by a super high contrast femtosecond laser pulses

A study is made of the ultra-short laser pulse irradiation of Ar cluster targets. Experiments have been performed with large cluster sizes and using very high laser contrasts, which have allowed clear and unambiguous observation of exotic inner-shell transitions in near-neutral Ar ions. The interaction of the main laser pulse with the unperturbed target is a necessary requirement for observing these lines. Our measurements are supported by kinetics calculations in which a very detailed atomic model is used. The calculations predict all of the spectral features found experimentally, and support the notion that the X-ray emission arises from many ion stages of the Ar plasma, from near-neutral through He-like ions, and from a range of plasma temperatures and densities. Differences between X-ray argon clusters excited at the laser-cluster and laser-droplet interactions have been analyzed. X-ray spectral methods have been proposed to determine the parameters of the plasma formed at the early stages of its evolution. It has been shown that the spectra of hollow ions are the most informative in the first moments of the heating of a cluster, whereas the diagnostics of the late stages can be performed using the conventional lines of multicharged ions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Kv2.1 channels play opposing roles in regulating membrane potential, Ca 2+ channel function, and myogenic tone in arterial smooth muscle

The accepted role of the protein Kv2.1 in arterial smooth muscle cells is to form K + channels in the sarcolemma. Opening of Kv2.1 channels causes membrane hyperpolarization, which decreases the activity of L-type Ca V 1.2 channels, lowering intracellular Ca 2+ ([Ca 2+ ] i ) and causing smooth muscle relaxation. A limitation of this model is that it is based exclusively on data from male arterial myocytes. Here, we used a combination of electrophysiology as well as imaging approaches to investigate the role of Kv2.1 channels in male and female arterial myocytes. We confirmed that Kv2.1 plays a canonical conductive role but found it also has a structural role in arterial myocytes to enhance clustering of Ca V 1.2 channels. Less than 1% of Kv2.1 channels are conductive and induce membrane hyperpolarization. Paradoxically, by enhancing the structural clustering and probability of Ca V 1.2–Ca V 1.2 interactions within these clusters, Kv2.1 increases Ca 2+ influx. These functional impacts of Kv2.1 depend on its level of expression, which varies with sex. In female myocytes, where expression of Kv2.1 protein is higher than in male myocytes, Kv2.1 has conductive and structural roles. Female myocytes have larger Ca V 1.2 clusters, larger [Ca 2+ ] i , and larger myogenic tone than male myocytes. In contrast, in male myocytes, Kv2.1 channels regulate membrane potential but not Ca V 1.2 channel clustering. We propose a model in which Kv2.1 function varies with sex: in males, Kv2.1 channels control membrane potential but, in female myocytes, Kv2.1 plays dual electrical and Ca V 1.2 clustering roles. This contributes to sex-specific regulation of excitability, [Ca 2+ ] i , and myogenic tone in arterial myocytes.

59 BASIC BIOLOGICAL SCIENCES↗