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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,351 records · Page 75

Catabolic pathway acquisition by rhizosphere bacteria readily enables growth with a root exudate component but does not affect root colonization

Horizontal gene transfer (HGT) is a fundamental evolutionary process that plays a key role in bacterial evolution. The likelihood of a successful transfer event is expected to depend on the precise balance of costs and benefits resulting from pathway acquisition. Most experimental analyses of HGT have focused on phenotypes that have large fitness benefits under appropriate selective conditions, such as antibiotic resistance. However, many examples of HGT involve phenotypes that are predicted to provide smaller benefits, such as the ability to catabolize additional carbon sources. We have experimentally simulated the consequences of one such HGT event in the laboratory, studying the effects of transferring a pathway for catabolism of the plant-derived aromatic compound salicyl alcohol between rhizosphere isolates from the Pseudomonas genus. We find that pathway acquisition enables rapid catabolism of salicyl alcohol with only minor disruptions to the existing metabolic and regulatory networks of the new host. However, this new catabolic potential does not confer a measurable fitness advantage during competitive growth in the rhizosphere. We conclude that the phenotype of salicyl alcohol catabolism is readily transferable but is selectively neutral under environmentally relevant conditions. We propose that this condition is common and that HGT of many pathways will be self-limiting because the selective benefits are small.

59 BASIC BIOLOGICAL SCIENCES↗

Nipah Virus-Like Particle Egress Is Modulated by Cytoskeletal and Vesicular Trafficking Pathways: a Validated Particle Proteomics Analysis

Classified as a biosafety level 4 (BSL4) select agent, Nipah virus (NiV) is a deadly henipavirus in the Paramyxoviridae family, with a nearly 75% mortality rate in humans, underscoring its global and animal health importance. Elucidating the process of viral particle production in host cells is imperative both for targeted drug design and viral particle-based vaccine development. However, little is understood concerning the functions of cellular machinery in paramyxoviral and henipaviral assembly and budding. Recent studies showed evidence for the involvement of multiple NiV proteins in viral particle formation, in contrast to the mechanisms understood for several paramyxoviruses as being reliant on the matrix (M) protein alone. Further, the levels and purposes of cellular factor incorporation into viral particles are largely unexplored for the paramyxoviruses. To better understand the involvement of cellular machinery and the major structural viral fusion (F), attachment (G), and matrix (M) proteins, we performed proteomics analyses on virus-like particles (VLPs) produced from several combinations of these NiV proteins. Our findings indicate that NiV VLPs incorporate vesicular trafficking and actin cytoskeletal factors. The involvement of these biological processes was validated by experiments indicating that the perturbation of key factors in these cellular processes substantially modulated viral particle formation. These effects were most impacted for NiV-F-modulated viral particle formation either autonomously or in combination with other NiV proteins, indicating that NiV-F budding relies heavily on these cellular processes. These findings indicate a significant involvement of the NiV fusion protein, vesicular trafficking, and actin cytoskeletal processes in efficient viral particle formation. Nipah virus is a zoonotic biosafety level 4 agent with high mortality rates in humans. The genus to which Nipah virus belongs, Henipavirus , includes five officially recognized pathogens; however, over 20 species have been identified in multiple continents within the last several years. As there are still no vaccines or treatments for NiV infection, elucidating its process of viral particle production is imperative both for targeted drug design as well as for particle-based vaccine development. Developments in high-throughput technologies make proteomic analysis of isolated viral particles a highly insightful approach to understanding the life cycle of pathogens such as Nipah virus.

59 BASIC BIOLOGICAL SCIENCES↗

Development of a TSR-based method for understanding structural relationships of cofactors and local environments in photosystem I

All chemical forms of energy and oxygen on Earth are generated via photosynthesis where light energy is converted into redox energy by two photosystems (PS I and PS II). There is an increasing number of PS I 3D structures deposited in the Protein Data Bank (PDB). The Triangular Spatial Relationship (TSR)-based algorithm converts 3D structures into integers (TSR keys). A comprehensive study was conducted, by taking advantage of the PS I 3D structures and the TSR-based algorithm, to answer three questions: (i) Are electron cofactors including P700, A -1 and A 0 , which are chemically identical chlorophylls, structurally different? (ii) There are two electron transfer chains (A and B branches) in PS I. Are the cofactors on both branches structurally different? (iii) Are the amino acids in cofactor binding sites structurally different from those not in cofactor binding sites? The key contributions and important findings include: (i) a novel TSR-based method for representing 3D structures of pigments as well as for quantifying pigment structures was developed; (ii) the results revealed that the redox cofactor, P700, are structurally conserved and different from other redox factors. Similar situations were also observed for both A -1 and A 0 ; (iii) the results demonstrated structural differences between A and B branches for the redox cofactors P700, A -1 , A 0 and A 1 as well as their cofactor binding sites; (iv) the tryptophan residues close to A 0 and A 1 are structurally conserved; (v) The TSR-based method outperforms the Root Mean Square Deviation (RMSD) and the Ultrafast Shape Recognition (USR) methods. The structural analyses of redox cofactors and their binding sites provide a foundation for understanding the unique chemical and physical properties of each redox cofactor in PS I, which are essential for modulating the rate and direction of energy and electron transfers.

59 BASIC BIOLOGICAL SCIENCES↗

Advancing the central role of non-model biorepositories in predictive modeling of emerging pathogens

The COVID-19 pandemic demonstrated the insufficiency of a reactive approach to emerging zoonotic pathogens. With spillover increasing in frequency as environments change and the human footprint continues to grow, pandemic prevention will require predictive models that can identify (i) potential zoonoses with a high likelihood of emergence and (ii) environmental or other features that may trigger a shift in host, vector, or pathogen baselines associated with emergence and/or spillover. Artificial intelligence (AI), and particularly its machine learning and deep learning branches, holds enormous potential for detecting shifts in large-scale biodiversity and disease datasets (genomic, ecological, geospatial, etc.). Such algorithms can be trained to identify subtle patterns in large volumes of data to yield insights into complex phenomena for which we have limited knowledge of the true cause(s) or predictor(s), as is the case for emerging infectious diseases.

59 BASIC BIOLOGICAL SCIENCES↗

The Monkeys and Parrots of Gold Rush-era California

As immigrant gold miners migrated en masse to San Francisco and northern California during the Gold Rush-era (ca. 1849–1855), they experienced new animals. Stopping in ports throughout Central and South America, these argonauts saw, felt, smelled, heard, and occasionally consumed, mammals, birds, reptiles, and many more creatures, which were wholly exotic to those species found at home. Two types of animals that the Gold Rush populace encountered during this era include parrots and monkeys. Although found throughout tropical environments in areas far distant from northern California, these animals became quickly imported to San Francisco during the early 1850s. A wild, turbulent Gold Rush-era helped facilitate the importation of these exotic animal types, both for comfort and entertainment, as they helped provide a source of companionship for miners unaccustomed to the shock of 1850s northern California.

59 BASIC BIOLOGICAL SCIENCES↗

Demonstration of a Strict Molecular Oxygen Requirement of Yellow Latex Oxidation in the Central Amazon Canopy Tree Muiratinga ( Maquira sclerophylla (Ducke) C.C. Berg)

Plant-derived latex is widely used in rubber production and plays important roles in ecological processes in the tropics. Although it is known that latex oxidation from the commercially important tree Hevea brasiliensis , results in latex browning, little is known about latex oxidation in highly diverse tropical ecosystems. Here we show that upon physical trunk damage, yellow latex released from the canopy tree Muiratinga ( Maquira sclerophylla (Ducke) C.C. Berg) is rapidly and extensively oxidized to a black resin in the presence of air within 15-30 min. In a nitrogen atmosphere, latex oxidation was inhibited, but was immediately activated upon exposure to air. The results suggest the occurrence of O 2 -dependent oxidative enzymes including polyphenol oxidase (PPO) within the latex of Muiratinga and supports previous findings of a key role of oxidation during latex coagulation.

59 BASIC BIOLOGICAL SCIENCES↗

Fully Implict Magneto-hydrodynamics Simulations of Coaxial Plasma Accelerators

The resistive Magneto-Hydrodynamic (MHD) model describes the behavior of a strongly ionized plasma in the presence of external electric and magnetic fields. We developed a fully implicit MHD simulation tool to solve the resistive MHD governing equations in the context of a cell-centered finite-volume scheme. The primary objective of this study is to use the fully-implicit algorithm to obtain insights into the plasma acceleration and jet formation processes in Coaxial Plasma accelerators; electromagnetic acceleration devices that utilize self-induced magnetic fields to accelerate thermal plasmas to large velocities. We also carry out plasma-surface simulations in order to study the impact interactions when these high velocity plasma jets impinge on target material surfaces. Scaling studies are carried out to establish some basic functional relationships between the target-stagnation conditions and the current discharged between the coaxial electrodes.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The lethal cargo of Myxococcus xanthus outer membrane vesicles

Myxococcus xanthus is a bacterial micro-predator known for hunting other microbes in a wolf pack-like manner. Outer membrane vesicles (OMVs) are produced in large quantities by M. xanthus and have a highly organized structure in the extracellular milieu, sometimes occurring in chains that link neighboring cells within a biofilm. OMVs may be a vehicle for mediating wolf pack activity by delivering hydrolytic enzymes and antibiotics aimed at killing prey microbes. Here, both the protein and small molecule cargo of the OMV and membrane fractions of M. xanthus were characterized and compared. Our analysis indicates a number of proteins that are OMV-specific or OMV-enriched, including several with putative hydrolytic function. Secondary metabolite profiling of OMVs identifies 16 molecules, many associated with antibiotic activities. Several hydrolytic enzyme homologs were identified, including the protein encoded by MXAN_3564 (mepA), an M36 protease homolog. Genetic disruption of mepA leads to a significant reduction in extracellular protease activity suggesting MepA is part of the long-predicted (yet to date undetermined) extracellular protease suite of M. xanthus.

59 BASIC BIOLOGICAL SCIENCES↗

Drought Drives Spatial Variation in the Millet Root Microbiome

Efforts to boost crop yield and meet global food demands while striving to reach sustainability goals are hindered by the increasingly severe impacts of abiotic stress, such as drought. One strategy for alleviating drought stress in crops is to utilize rootassociated bacteria, yet knowledge concerning the relationship between plant hosts and their microbiomes during drought remain under-studied. One broad pattern that has recently been reported in a variety of monocot and dicot species from both native and agricultural environments, is the enrichment of Actinobacteria within the drought-stressed root microbiome. In order to better understand the causes of this phenomenon, we performed a series of experiments in millet plants to explore the roles of drought severity, drought localization, and root development in provoking Actinobacteria enrichment within the root endosphere. Through 16S rRNA ampliconbased sequencing, we demonstrate that the degree of drought is correlated with levels of Actinobacterial enrichment in four species of millet. Additionally, we demonstrate that the observed drought-induced enrichment of Actinobacteria occurs along the length of the root, but the response is localized to portions of the root experiencing drought. Finally, we demonstrate that Actinobacteria are depleted in the dead root tissue of Japanese millet, suggesting saprophytic activity is not the main cause of observed shifts in drought-treated root microbiome structure. Collectively, these results help narrow the list of potential causes of drought-induced Actinobacterial enrichment in plant roots by showing that enrichment is dependent upon localized drought responses but not root developmental stage or root death.

59 BASIC BIOLOGICAL SCIENCES↗

Microscopic Derivation of Transition-state Theory for Complex Quantum Systems

The decay of quantum complex systems through a potential barrier is often described with transition-state theory, also known as RRKM theory in chemistry. Here we derive the basic formula for transition-state theory based on a generic Hamiltonian as might be constructed in a configuration-interaction basis. Two reservoirs of random Hamiltonians from Gaussian orthogonal ensembles are coupled to intermediate states representing the transition states at a barrier. Under the condition that the decay of the reservoirs to open channels is large, an analytic formula for reaction rates is derived. Here, the transition states act as independent Breit–Wigner resonances which contribute additively to the total transition probability, as is well known for electronic conductance through resonant tunneling states. It is also found that the transition probability is independent of the decay properties of the states in the second reservoir over a wide range of decay widths.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A method for analyzing dynamic stall of helicopter rotor blades

A model for each of the basic flow elements involved in the unsteady stall of a two-dimensional airfoil in incompressible flow is presented. The interaction of these elements is analyzed using a digital computer. Computations of the loading during transient and sinusoidal pitching motions are in good qualitative agreement with measured loads. The method was used to confirm that large torsional response of helicopter blades detected in flight tests can be attributed to dynamic stall.

Crimi, P.↗

Pioneer Venus mission plan for atmospheric probes and an orbiter.

The mission concept is described for a spin-stabilized spacecraft being designed to deliver an array of aerodynamic probes over the surface of Venus, and, on a second flight mission, to inject the spacecraft into a Venusian orbit. Large and Small Probes and the instrumented 'Bus' structure will enter the Venusian atmosphere and directly measure its characteristics. An orbiting configuration of the same basic Bus spacecraft will serve as a platform from which to examine the planetary environment, the outer atmosphere and its interaction with the solar wind, as well as surface topography. The orbital mission will extend over a complete revolution of the planet around the sun and around its own axis. Requirements for cost effectiveness and firm adherence within early cost projections are emphatic program guidelines which affect every major element of the mission plan and conceptual design.

Dyer, J. W.↗

Exploitation of Seasat-A oceanographic measurements for Navy R and D applications

Basic research, exploratory development and operational demonstration potentials for exploitation of SEASAT-A data are discussed. Some of the interactions and tradeoffs in sensor design and measurement technology, and advanced development of environmental analysis and prediction products for operational fleet support are outlined.

Noble, V.↗

Introduction: Man and his total environment

Environmental changes and the utilization of finite resources are analyzed. Beyond the satisfaction of basic physical needs, the advancement of civilization toward an ever-improving quality of like is likewise dependent upon mans' interaction with his entire environment. This larger system is controlled externally by electromagnetic and particle energy from the sun and internally by the dynamic interchange of energy between the solid earth, oceans, the atmosphere, and the magnetosphere. This exchange of energy that determines the structure of the earth's environemental system is evaluated.

Source record↗

The effects on the earth's magnetotail from shocks in the solar wind

A new, minimally diffusive MHD computer code has been used to simulate the time-dependent, 2D interaction of the solar wind with the earth's magnetosphere. The equilibrium with a simulated unmagnetized solar wind shows the basic features of the magnetosphere: bow shock, magnetopause, and long magnetotail. A simulated shock in the solar wind shows the presence of shock focussing in the midplane of the magnetotail. This focussing can be important in the energy budget of the plasma sheet and may have an important role in the initiation of substorms.

Lyon, J.↗

Interacting binary stars - Freaks or rosetta stones

Attention is given to semidetached binaries of the Algol type and to related interacting systems, such as Beta Lyrae and the W Serpentis stars. A brief description is given of observational problems. The basic properties of the Algol variables are satisfactorily explained by means of evolutionary models that assume considerable mass transfer between the components. It is pointed out that ultraviolet spectra obtained with the IUE satellite corroborate the view that the present subgiant secondary component was initially the more massive star and that it has been stripped of a large fraction of its mass so that the deep layers affected by CNO processing are now denuded. It is believed that the present-day 'classical' Algols must have undergone a phase of rapid mass transfer in the past and that Beta Lyrae and the W Serpentis stars are probably closer to that stage than ordinary Algols. Around the accreting star a complex structure is formed, and an induced stellar wind may blow a large part of the transferred matter out of the system.

Plavec, M. J.↗

Measurement of reach envelopes with a four-camera Selective Spot Recognition (SELSPOT) system

The basic Selective Spot Recognition (SELSPOT) system is essentially a system which uses infrared LEDs and a 'camera' with an infrared-sensitive photodetector, a focusing lens, and some A/D electronics to produce a digital output representing an X and Y coordinate for each LED for each camera. When the data are synthesized across all cameras with appropriate calibrations, an XYZ set of coordinates is obtained for each LED at a given point in time. Attention is given to the operating modes, a system checkout, and reach envelopes and software. The Video Recording Adapter (VRA) represents the main addition to the basic SELSPOT system. The VRA contains a microprocessor and other electronics which permit user selection of several options and some interaction with the system.

Stramler, J. H., Jr.↗

Atmospheric and Science Complexity Effects on Surface Bidirectional Reflectance

Among the tools used in passive remote sensing of Earth resources in the visible and near-infrared spectral regions are measurements of spectral signature and bidirectional reflectance functions (BDRFs). Determination of surface properties using these observables is complicated by a number of factors, including: (1) mixing of surface components, such as soil and vegetation, (2) multiple reflections of radiation due to complex geometry, such as in crop canopies, and (3) atmospheric effects. In order to bridge the diversity in these different approaches, there is a need for a fundamental physical understanding of the influence of the various effects and a quantiative measure of their relative importance. In particular, we consider scene complexity effects using the example of reflection by vegetative surfaces. The interaction of sunlight with a crop canopy and interpretation of the spectral and angular dependence of the emergent radiation is basically a multidimensional radiative transfer problem. The complex canopy geometry, underlying soil cover, and presence of diffuse as well as collimated illumination will modify the reflectance characteristics of the canopy relative to those of the individual elements.

Diner, D. J.↗