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DOE OSTI2020

General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part II

X-ray Bragg coherent diffraction imaging (BCDI) has been demonstrated as a powerful 3D microscopy approach for the investigation of sub-micrometre-scale crystalline particles. The approach is based on the measurement of a series of coherent Bragg diffraction intensity patterns that are numerically inverted to retrieve an image of the spatial distribution of the relative phase and amplitude of the Bragg structure factor of the diffracting sample. This 3D information, which is collected through an angular rotation of the sample, is necessarily obtained in a non-orthogonal frame in Fourier space that must be eventually reconciled. To deal with this, the approach currently favored by practitioners (detailed in Part I) is to perform the entire inversion in conjugate non-orthogonal real- and Fourier-space frames, and to transform the 3D sample image into an orthogonal frame as a post-processing step for result analysis. In this article, which is a direct follow-up of Part I, two different transformation strategies are demonstrated, which enable the entire inversion procedure of the measured data set to be performed in an orthogonal frame. The new approaches described here build mathematical and numerical frameworks that apply to the cases of evenly and non-evenly sampled data along the direction of sample rotation ( i.e. the rocking curve). The value of these methods is that they rely on the experimental geometry, and they incorporate significantly more information about that geometry into the design of the phase-retrieval Fourier transformation than the strategy presented in Part I. Finally, two important outcomes are (1) that the resulting sample image is correctly interpreted in a shear-free frame and (2) physically realistic constraints of BCDI phase retrieval that are difficult to implement with current methods are easily incorporated. Computing scripts are also given to aid readers in the implementation of the proposed formalisms.

36 MATERIALS SCIENCE↗

DOE OSTI2022

Patterns and controls on island‐wide aboveground biomass accumulation in second‐growth forests of Puerto Rico

Abstract Understanding the heterogeneity of biomass accumulation in second‐growth tropical forests following land use abandonment is important for informing ecosystem carbon models and forest restoration efforts. There is an urgent need for a broad sample of second‐growth forests to enhance our knowledge of carbon accumulation in human‐dominated landscapes, especially for older forests. Puerto Rico has predominantly second‐growth forests, ranging in age from approximately 25 to more than 80 years. We used an island‐wide sample of airborne lidar from the NASA Goddard Lidar, Hyperspectral, and Thermal (G‐LiHT) Airborne Imager collected on March 2017, forest inventory data, and data on forest age, precipitation, soils, and land use to estimate aboveground biomass stocks in moist and wet, second‐growth tropical forests. Biomass accumulation rates in Puerto Rico were lower, on average, than in other Neotropical forests. Median biomass across >16,700 ha of older second‐growth forests was 105 Mg ha −1 , and sampled biomass rarely surpassed 250 Mg ha −1 . Differences in biomass by age were large and persistent across different substrates and land uses, with a plateau in the pattern of island‐wide biomass accumulation after about 33 years. A spatial regression model showed that multiple factors were related to biomass accumulation, including time since abandonment, geologic substrate, past land use as coffee or pasture, precipitation, topographic wetness index, and slope. Our findings have important consequences for the total carbon storage and expected climate mitigation benefits of large‐scale reforestation efforts, and highlight the value of airborne lidar for quantifying biomass variability in complex tropical landscapes. Abstract in Spanish is available with online material.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Mapping the soil microbiome functions shaping wetland methane emissions

Accounting for only 8% of Earth’s land cover, freshwater wetlands remain the foremost contributors to global methane emissions. Yet the microorganisms and processes underlying methane emissions from wetland soils remain poorly understood. Over a five-year period, we surveyed the microbial membership and in situ methane measurements from over 700 samples in one of the most prolific methane-emitting wetlands in the United States. We constructed a catalog of 2,502 metagenome-assembled genomes (MAGs), with more than half of the 70 bacterial and archaeal phyla sampled containing novel lineages. Integration of these data with 133 soil metatranscriptomes provided a genome-resolved view of the biogeochemical specialization and versatility expressed over wetland soil spatial and temporal gradients. Centimeter-scale depth differences best explained patterns of microbial community structure and transcribed functionalities, even more than land cover or temporal information. Moreover, while extended flooding restructured soil redox, this perturbation failed to reconfigure the transcriptional profiles of methane-cycling microorganisms, contrasting with theoretically expected responses to hydrological perturbations. Co-expression analyses, coupled with depth-resolved methane measurements, revealed the metabolisms and trophic structures most predictive of methane hotspots. Mapping the spatiotemporal transcriptional patterns on this compendium of biogeochemically classified soil-derived genomes begins to untangle the microbial carbon, energy, and nutrient processing contributing to wetland methane production.

MAG↗

DOE OSTI2024

Epigenetic drift underlies epigenetic clock signals, but displays distinct responses to lifespan interventions, development, and cellular dedifferentiation

Changes in DNA methylation with age are observed across the tree of life. The stereotypical nature of these changes can be modeled to produce epigenetic clocks capable of predicting chronological age with unprecedented accuracy. Despite the predictive ability of epigenetic clocks and their utility as biomarkers in clinical applications, the underlying processes that produce clock signals are not fully resolved, which limits their interpretability. Here, we develop a computational approach to spatially resolve the within read variability or “disorder” in DNA methylation patterns and test if age-associated changes in DNA methylation disorder underlie signals comprising epigenetic clocks. We find that epigenetic clock loci are enriched in regions that both accumulate and lose disorder with age, suggesting a link between DNA methylation disorder and epigenetic clocks. We then develop epigenetic clocks that are based on regional disorder of DNA methylation patterns and compare their performance to other epigenetic clocks by investigating the influences of development, lifespan interventions, and cellular dedifferentiation. We identify common responses as well as critical differences between canonical epigenetic clocks and those based on regional disorder, demonstrating a fundamental decoupling of epigenetic aging processes. Collectively, we identify key linkages between epigenetic disorder and epigenetic clocks and demonstrate the multifaceted nature of epigenetic aging in which stochastic processes occurring at non-random loci produce predictable outcomes.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1970

Elimination of coherent noise in a coherent light imaging system

Optical imaging systems using coherent light introduce objectionable noise into the output image plane. Dust and bubbles on and in lenses cause most of the noise in the output image. This noise usually appears as bull's-eye diffraction patterns in the image. By rotating the lens about the optical axis these diffraction patterns can be essentially eliminated. The technique does not destroy the spatial coherence of the light and permits spatial filtering of the input plane.

Grebowsky, G. J.↗

NASA NTRS1976

Upper tropospheric dynamics as reflected in Nimbus 4 THIR 6.7-micron data

An investigation was conducted of the spatial and temporal relationships existing between the radiometrically observed water vapor patterns in cloud free areas and the conventionally derived water vapor patterns. The upper and middle tropospheric water vapor budget and the associated dynamics were examined to obtain a basis for a more definite evaluation of the significance of the Nimbus 4 radiometric 6.7-micrometer observations for the study of tropospheric dynamics in cloud free areas. A large-amplitude trough situated to the lee of the Rocky Mountains over the central U.S. between April 30 and May 1, 1970, was selected for the investigation because it best illustrated large upper tropospheric dynamic variations.

Rodgers, E. B.↗

NASA NTRS1977

High resolution mapping of the magnetic field of the solar corona

The mapping of the current-free magnetic field of the solar corona and the reliability of the spherical harmonic analysis of the photospheric magnetic field pattern are improved by data with much greater dynamic range and spatial resolution than previously available and a new algorithm which permits spherical harmonic expansion to a much higher value of the principal index. Coronal field maps can be drawn for local regions, for just the open field lines, and for various spatial resolutions on a global scale.

Altschuler, M. D.↗

NASA NTRS1982

Geographic science

The use of multispectral imaging systems in land use, geomorphological, and cartographic applications is examined. Spatial, spectral, and geometric resolution requirements for photo interpretation and multispectral pattern recognition are discussed. The potential contributions of these systems in specific experiments is also included.

Bryant, N.↗

NASA NTRS1986

Follow-on proposal identifying environmental features for land management decisions

Urban morphology (an examination of spatial fabric and structure), natural ecosystem (investigations emphasizing biophysical processes and patterns), and human ecosystem (emphasizing socio-economic and engineering parameters) were studied. The most critical variable, transpiration, in the ASPCON model, created by Jaynes (1978), describing the hydrology of aspen to conifer succession was studied to improve the accuracy. Transpiration is determined by a canopy transpiration model which estimates consumptive water use (CWU) for specific species and a plant activity index. Also studied was Pinyon-Juniper woodland erosion.

Wright, P. M.↗

NASA NTRS1986

Patterns of vegetation in the Owens Valley, California

Spectral characteristics of semi-arid shrub communities were examined using Airborne Imaging Spectrometer (AIS) data collected in the tree mode on 23 May 1985. Mesic sites with relatively high vegetation density and distinct zonation patterns exhibited greater spectral signature variations than sites with more xeric shrub communities. Spectral signature patterns were not directly related to vegetation density or physiognomy, although spatial maps derived from an 8-channel maximum likelihood classification were supported by photo-interpreted surface features. In AIS data, the principal detected effect of shrub vegetation on the alluvial fans is to lower reflectance across the spectrum. These results are similar to those reported during a period of minimal physiological activity in autumn, indicating that shadows cast by vegetation canopies are an important element of soil-vegetation interaction under conditions of relatively low canopy cover.

Ustin, S. L.↗

NASA NTRS1991

Two-Dimensional Acousto-Optical Spectrum Analyzer

State-of-the-art two-dimensional acousto-optical spectrum analyzer processes input radio-frequency signal in real time into components in any number of spectral channels up to about 10(Sup5). Input radio-frequency signal to be analyzed launched via transducer into acousto-optical device along x axis. Acousto-optical device becomes Bragg cell. Pulsed plane waves of light from laser aimed at Bragg cell, which spatially modulates phases of plane waves and diffracts waves according to pattern of acoustic signal.

Ansari, Homayoon↗

NASA NTRS1991

On the seasonal phytoplankton concentration and sea surface temperature cycles of the Gulf of Mexico as determined by satellites

Multiyear series of coastal zone color scanner (CZCS) and AVHRR observations are presently used to derive monthly climatologies of near-surface phytoplankton pigment concentration and SST for the Gulf of Mexico; these, in combination with 1946-1987 SST data and NOAA hydrographic profile data covering 1914-1985, show that the most important single factor controlling seasonal cycle surface-pigment concentration is the depth of the mixed layer. The CZCS images indicate that seasonal variation seaward of the continental shelf is synchronous throughout the Gulf. The combination of ocean color and IR images allows year-round observation of surface circulation spatial structure in the Gulf, as well as of the dispersal pattern of the Mississippi River's plume.

Mueller-Karger, Frank E.↗

NASA NTRS1990

Observations of filamentary field-aligned current coupling between the magnetospheric boundary layer and the ionosphere

A distinct class of dayside high-latitude magnetic pulsations can be identified from the spatial characteristics of the disturbance field. These pulsations exhibit traveling radial patterns such as would result from moving filaments of field-aligned current interacting with the ionosphere to produce cells of Hall current and vortexlike plasma flow. Time intervals containing a series of continuous multiple vortices are investigated here. The vortices occur on the boundary between sunward and antisunward ionospheric plasma convection. Low altitude DMSP satellite particle measurements indicate that the vortices are on magnetic field lines which map to the inner edge of the magnetospheric low latitude boundary layer. No repetitive solar wind disturbance (e.g., pressure variations) appears to be associated with the events, suggesting that the vortices are related to a local magnetospheric instability. No strong correlation between interplanetary field conditions and the detection of vortices is found.

Clauer, C. R.↗

NASA NTRS1993

Prediction of thermal cycling induced cracking in polymer matrix composites

This report summarizes the work done in the period February 1993 through July 1993 on the 'Prediction of Thermal Cycling Induced Cracking In Polymer Matrix Composites' program. An oral presentation of this work was given to Langley personnel in September of 1993. This document was prepared for archival purposes. Progress studies have been performed on the effects of spatial variations in material strength. Qualitative agreement was found with observed patterns of crack distribution. These results were presented to NASA Langley personnel in November 1992. The analytical methodology developed by Prof. McManus in the summer of 1992 (under an ASEE fellowship) has been generalized. A method for predicting matrix cracking due to decreasing temperatures and/or thermal cycling in all plies of an arbitrary laminate has been implemented as a computer code. The code also predicts changes in properties due to the cracking. Experimental progressive cracking studies on a variety of laminates were carried out at Langley Research Center. Results were correlated to predictions using the new methods. Results were initially mixed. This motivated an exploration of the configuration of cracks within laminates. A crack configuration study was carried out by cutting and/or sanding specimens in order to examine the distribution of cracks within the specimens. These investigations were supplemented by dye-penetrant enhanced X-ray photographs. The behavior of thin plies was found to be different from the behavior of thicker plies (or ply groups) on which existing theories are based. Significant edge effects were also noted, which caused the traditional metric of microcracking (count of cracks on a polished edge) to be very inaccurate in some cases. With edge and configuration taken into account, rough agreement with predictions was achieved. All results to date were reviewed with NASA Langley personnel in September 1993.

Mcmanus, Hugh L.↗

NASA NTRS1994

Formation and eruption of Sun-aligned arcs at the polar cap-auroral oval boundary

This paper reports on results from a study of the poleward edge of the auroral oval in the morning sector using a comprehensive blend of in-situ and ground-based measurements. Three rockets, equipped to measure electric and magnetic fields, energetic particles, and plasma density flew into an auroral display whose dynamical features were reorded with a digital image into an auroral display intensified all-sky camera as well as with an incoherent scatter radar. In addition, a number of DMSP satellite measurements bracketed the launch time. Evidence is presented here that in a condition of declining magnetic activity Sun-aligned arcs are injected into the polar cap at velocities approximately 7 km/s from locations of periodic brightening along the morningside of the auroral oval. The multipoint in situ measurements allow some separation of temporal and spatial effects and strongly suggest a poleward contraction of the convention pattern of about 0.25 deg INVL in 70 s. The most equatorward of the two brightest arcs studied erupted into a region which already was characterized by strong sunward convection. The most poleward, however, pushed into a region that had been convecting in an antisunward direction at velocities exceeding 1 km/s less than 2 min earlier, and it is likely that sunward convection subsequently pertained poleward of that arc as well. We believe that these events mark the reconfiguration of the magnetosphere into a system characterized by a smaller polar cap.

Berg, G. A.↗

NASA NTRS2000

Section on Observed Impacts on El Nino

Agricultural applications of El Nino forecasts are already underway in some countries and need to be evaluated or re-evaluated. For example, in Peru, El Nino forecasts have been incorporated into national planning for the agricultural sector, and areas planted with rice and cotton (cotton being the more drought-tolerant crop) are adjusted accordingly. How well are this and other such programs working? Such evaluations will contribute to the governmental and intergovernmental institutions, including the Inter-American Institute for Global Change Research and the US National Ocean and Atmospheric Agency that are fostering programs to aid the effective use of forecasts. As El Nino climate forecasting grows out of the research mode into operational mode, the research focus shifts to include the design of appropriate modes of utilization. Awareness of and sensitivity to the costs of prediction errors also grow. For example, one major forecasting model failed to predict the very large El Nino event of 1997, when Pacific sea-surface temperatures were the highest on record. Although simple correlations between El Nino events and crop yields may be suggestive, more sophisticated work is needed to understand the subtleties of the interplay among the global climate system, regional climate patterns, and local agricultural systems. Honesty about the limitations of an forecast is essential, especially when human livelihoods are at stake. An end-to-end analysis links tools and expertise from the full sequence of ENSO cause-and-effect processes. Representatives from many disciplines are needed to achieve insights, e.g, oceanographers and atmospheric scientists who predict El Nino events, climatologists who drive global climate models with sea-surface temperature predictions, agronomists who translate regional climate connections in to crop yield forecasts, and economists who analyze market adjustments to the vagaries of climate and determine the value of climate forecasts. Methods include historical studies to understand past patterns and to test hindcasts of the prediction tools, crop modeling, spatial analysis and remote sensing. This research involves expanding, deepening, and applying the understanding of physical climate to the fields of agronomy and social science; and the reciprocal understanding of crop growth and farm economics to climatology. Delivery of a regional climate forecast with no information about how the climate forecast was derived limits its effectiveness. Explanation of a region's major climate driving forces helps to place a seasonal forecast in context. Then, a useful approach is to show historical responses to previous El Nino events, and projections, with uncertainty intervals, of crop response from dynamic process crop growth models. Regional ID forecasts should be updated with real-time weather conditions. Since every El Nino event is different, it is important to track, report and advise on each new event as it unfolds. The stability of human enterprises depends on understanding both the potentialities and the limits of predictability. Farmers rely on past experience to anticipate and respond to fluctuations in the biophysical systems on which their livelihoods depend. Now scientists are improving their ability to predict some major elements of climate variability. The improvements in the reliability of El Nino forecasts are encouraging, but seasonal forecasts for agriculture are not, and will probably never be completely infallible, due to the chaotic nature of the climate system. Uncertainties proliferate as we extend beyond Pacific sea-surface temperatures to climate teleconnections and agricultural outcomes. The goal of this research is to shed as a clear light as possible on these inherent uncertainties and thus to contribute to the development of appropriate responses to El Nino and other seasonal forecasts for a range of stakeholders, which, ultimately, includes food consumers everywhere.

Rosenzweig, Cynthia↗

NASA NTRS2021

Extensive Characterization of Aerosol Optical Properties and Chemical Component Concentrations: Application of the GRASP/Component Approach to Long-term AERONET Measurements

A recently developed GRASP/Component approach (GRASP: Generalized Retrieval of Atmosphere and Surface Properties) was applied to AERONET (Aeronet Robotic Network) sun photometer measurements in this study. Unlike traditional aerosol component retrieval, this approach allows the inference of some information about aerosol composition directly from measured radiance, rather than indirectly through the inversion of optical parameters, and has been integrated into the GRASP algorithm. The newly developed GRASP/Component approach was applied to 13 AERONET sites for different aerosol types under the assumption of aerosol internal mixing rules to analyze the characteristics of aerosol components and their distribution patterns. The results indicate that the retrievals can characterize well the spatial and temporal variability of the component concentration for different aerosol types. A reasonable agreement between GRASP BC retrievals and MERRA-2 BC products is found for all different aerosol types. In addition, the relationships between aerosol component content and aerosol optical parameters such as aerosol optical depth (AOD), fine-mode fraction (FMF), absorption Ångström exponent (AAE), scattering Ångström exponent (SAE), and single scattering albedo (SSA) are also analyzed for indirect verifying the reliability of the component retrieval. It was demonstrated the GRASP/Component optical retrievals are in good agreement with AERONET standard products [e.g., correlation coefficient (R) of 0.93–1.0 for AOD, fine-mode AOD (AODF), coarse-mode AOD (AODC) and Ångström exponent (AE); R = ~ 0.8 for absorption AOD (AAOD) and SSA; RMSE (root mean square error) < 0.03 for AOD, AODF, AODC, AAOD and SSA]. Thus, it is demonstrated the GRASP/Component approach can provide aerosol optical products with comparable accuracy as the AERONET standard products from the ground-based sun photometer measurements as well as some additional important inside on aerosol composition.

Xindan Zhang↗

NASA NTRS2013

How Cities Breathe: Ground-Referenced, Airborne Hyperspectral Imaging Precursor Measurements To Space-Based Monitoring

Methane's (CH4) large global warming potential (Shindell et al., 2012) and likely increasing future emissions due to global warming feedbacks emphasize its importance to anthropogenic greenhouse warming (IPCC, 2007). Furthermore, CH4 regulation has far greater near-term climate change mitigation potential versus carbon dioxide CO2, the other major anthropogenic Greenhouse Gas (GHG) (Shindell et al., 2009). Uncertainties in CH4 budgets arise from the poor state of knowledge of CH4 sources - in part from a lack of sufficiently accurate assessments of the temporal and spatial emissions and controlling factors of highly variable anthropogenic and natural CH4 surface fluxes (IPCC, 2007) and the lack of global-scale (satellite) data at sufficiently high spatial resolution to resolve sources. Many important methane (and other trace gases) sources arise from urban and mega-urban landscapes where anthropogenic activities are centered - most of humanity lives in urban areas. Studying these complex landscape tapestries is challenged by a wide and varied range of activities at small spatial scale, and difficulty in obtaining up-to-date landuse data in the developed world - a key desire of policy makers towards development of effective regulations. In the developing world, challenges are multiplied with additional political access challenges. As high spatial resolution satellite and airborne data has become available, activity mapping applications have blossomed - i.e., Google maps; however, tap a minute fraction of remote sensing capabilities due to limited (three band) spectral information. Next generation approaches that incorporate high spatial resolution hyperspectral and ultraspectral data will allow detangling of the highly heterogeneous usage megacity patterns by providing diagnostic identification of chemical composition from solids (refs) to gases (refs). To properly enable these next generation technologies for megacity include atmospheric radiative transfer modeling the complex and often aerosol laden, humid, urban microclimates, atmospheric transport and profile monitoring, spatial resolution, temporal cycles (diurnal and seasonal which involve interactions with the surrounding environment diurnal and seasonal cycles) and representative measurement approaches given traffic realities. Promising approaches incorporate contemporaneous airborne remote sensing and in situ measurements, nocturnal surface surveys, with ground station measurement

Leifer, Ira↗