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At least 1,333 records · Page 74

Middle Atmosphere Program. Handbook for MAP, volume 9

The term Mesosphere-Stratosphere-Troposphere radar (MST) was invented to describe the use of a high power radar transmitter together with a large vertically, or near vertically, pointing antenna to study the dynamics and structure of the atmosphere from about 10 to 100 km, using the very weak coherently scattered radiation returned from small scale irregularities in refractive index. Nine topics were addressed including: meteorological and dynamic requirements for MST radar networks; interpretation of radar returns for clear air; techniques for the measurement of horizontal and vertical velocities; techniques for studying gravity waves and turbulence; capabilities and limitations of existing MST radar; design considerations for high power VHF radar transceivers; optimum radar antenna configurations; and data analysis techniques.

Bowhill, S. A.↗

Deducing the N- and O-glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2

The current emergence of the novel coronavirus pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) demands the development of new therapeutic strategies to prevent rapid progress of mortalities. The coronavirus spike (S) protein, which facilitates viral attachment, entry and membrane fusion is heavily glycosylated and plays a critical role in the elicitation of the host immune response. The spike protein is comprised of two protein subunits (S1 and S2), which together possess 22 potential N-glycosylation sites. Herein, we report the glycosylation mapping on spike protein subunits S1 and S2 expressed on human cells through high-resolution mass spectrometry. We have characterized the quantitative N-glycosylation profile on spike protein and interestingly, observed unexpected O-glycosylation modifications on the receptor-binding domain of spike protein subunit S1. Even though O-glycosylation has been predicted on the spike protein of SARS-CoV-2, this is the first report of experimental data for both the site of O-glycosylation and identity of the O-glycans attached on the subunit S1. Our data on the N- and O-glycosylation are strengthened by extensive manual interpretation of each glycopeptide spectra in addition to using bioinformatics tools to confirm the complexity of glycosylation in the spike protein. Here, the elucidation of the glycan repertoire on the spike protein provides insights into the viral binding studies and more importantly, propels research toward the development of a suitable vaccine candidate.

59 BASIC BIOLOGICAL SCIENCES↗

A methodology for small scale rural land use mapping in semi-arid developing countries using orbital imagery. Part 5: Experimental and operational techniques of mapping land use

The author has identified the following significant results. Scope of the preprocessing techniques was restricted to standard material from the EROS Data Center accompanied by some enlarging procedures and the use of the diazo process. Investigation has shown that the most appropriate sampling strategy for this study is the stratified random technique. A viable sampling procedure, together with a method for determining minimum number of sample points in order to test results of any interpretation are presented.

Vangenderen, J. L.↗

ORCA: Outlier detection and Robust Clustering for Attributed graphs

Here, a framework is proposed to simultaneously cluster objects and detect anomalies in attributed graph data. Our objective function along with the carefully constructed constraints promotes interpretability of both the clustering and anomaly detection components, as well as scalability of our method. In addition, we developed an algorithm called Outlier detection and Robust Clustering for Attributed graphs (ORCA) within this framework. ORCA is fast and convergent under mild conditions, produces high quality clustering results, and discovers anomalies that can be mapped back naturally to the features of the input data. The efficacy and efficiency of ORCA is demonstrated on real world datasets against multiple state-of-the-art techniques.

97 MATHEMATICS AND COMPUTING↗

Geothermal Play Fairway Analysis, Part 2: GIS methodology

Play Fairway Analysis (PFA) in geothermal exploration originates from a systematic methodology developed within the petroleum industry and is based on a geologic, geophysical, and hydrologic framework of identified geothermal systems. We tailored this methodology to study the geothermal resource potential of the Snake River Plain and surrounding region, but it can be adapted to other geothermal resource settings. We adapted the PFA approach to geothermal resource exploration by cataloging the critical elements controlling exploitable hydrothermal systems, establishing risk matrices that evaluate these elements in terms of both probability of success and level of knowledge, and building a code-based ‘processing model’ to process results. A geographic information system was used to compile a range of different data types, which we refer to as elements (e.g., faults, vents, heat flow, etc.), with distinct characteristics and measures of confidence. Discontinuous discrete data (points, lines, or polygons) for each element were transformed into continuous interpretive 2D grid surfaces called evidence layers. Because different data types have varying uncertainties, most evidence layers have an accompanying confidence layer which reflects spatial variations in these uncertainties. Risk layers, as defined here, are the product of evidence and confidence layers, and are the building blocks used to construct Common Risk Segment (CRS) maps for heat, permeability, and seal, using a weighted sum for permeability and heat, but a different approach with seal. CRS maps quantify the variable risk associated with each of these critical components. In a final step, the three CRS maps were combined into a Composite Common Risk Segment (CCRS) map, using a modified weighted sum, for results that reveal favorable areas for geothermal exploration. Additional maps are also presented that do not mix contributions from evidence and confidence (to allow an isolated view of evidence and confidence), as well as maps that calculate favorability using the product of components instead of a weighted sum (to highlight where all components are present). Our approach helped to identify areas of high geothermal favorability in the western and central Snake River Plain during the first phase of study and helped identify more precise local drilling targets during the second phase of work. By identifying favorable areas, this methodology can help to reduce uncertainty in geothermal energy exploration and development.

15 GEOTHERMAL ENERGY↗

Argyres–Douglas theories, S 1 reductions, and topological symmetries

In a recent paper, we proposed closed-form expressions for the superconformal indices of the (A(1), A(2n-3)) and(A(1), D-2n) Argyres-Douglas (AD) superconformal field theories (SCFTs) in the Schur limit. Following up on our results, we turn our attention to the small S-1 regime of these indices. As expected on general grounds, our study reproduces the S-3 partition functions of the resulting dimensionally reduced theories. However, we show that in all cases-with the exception of the reduction of the (A(1), D-4) SCFTcertain imaginary partners of real mass terms are turned on in the corresponding mirror theories. We interpret these deformations as R symmetry mixing with the topological symmetries of the direct S-1 reductions. Moreover, we argue that these shifts occur in any of our theories whose four-dimensional N = 2 superconformal U(1)(R) symmetry does not obey an SU(2) quantization condition. We then use our R symmetry map to find the fourdimensional ancestors of certain three-dimensional operators. Somewhat surprisingly, this picture turns out to imply that the scaling dimensions of many of the chiral operators of the four-dimensional theory are encoded in accidental symmetries of the three-dimensional theory. We also comment on the implications of our work on the space of general N = 2 SCFTs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Methodology of remote sensing data interpretation and geological applications

Elements of photointerpretation discussed include the analysis of photographic texture and structure as well as film tonality. The method used is based on conventional techniques developed for interpreting aerial black and white photographs. By defining the properties which characterize the form and individuality of dual images, homologous zones can be identified. Guy's logic method (1966) was adapted and used on functions of resolution, scale, and spectral characteristics of remotely sensed products. Applications of LANDSAT imagery are discussed for regional geological mapping, mineral exploration, hydrogeology, and geotechnical engineering in Brazil.

Parada, N. D. J.↗

Visualizing Charge Transport and Nanoscale Electrochemistry by Hyperspectral Kelvin Probe Force Microscopy

Charge-transport and electrochemical processes are heavily influenced by the local microstructure. Kelvin probe force microscopy (KPFM) is a widely used technique to map electrochemical potentials at the nanometer scale; however, it offers little information on local charge dynamics. In this study, we implement a hyperspectral KPFM approach for spatially mapping bias-dependent charge dynamics in timescales ranging from the sub-millisecond to the second regime. As a proof of principle, we investigate the role mobile surface charges play in a three-unit-cell LaAlO 3 /SrTiO 3 oxide heterostructure. We explore machine learning approaches to assist with visualization, pattern recognition, and interpretation of the information-rich data sets. Linear unmixing methods reveal hidden bias-dependent interfacial processes, most likely water splitting, which are essentially unnoticed by functional fitting of the dynamic response alone. Hyperspectral KPFM will be beneficial for investigating nanoscale charge transport and local reactivity in systems involving a possible combination of electronic, ionic, and electrochemical phenomena.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Galaxy clustering in the DESI Legacy Survey and its imprint on the CMB

ABSTRACT We use data from the DESI Legacy Survey imaging to probe the galaxy density field in tomographic slices covering the redshift range 0 < z < 0.8. After careful consideration of completeness corrections and galactic cuts, we obtain a sample of 4.9 × 107 galaxies covering 17 739 deg2. We derive photometric redshifts with precision σz/(1 + z) = 0.012−0.015, and compare with alternative estimates.1 Cross-correlation of the tomographic galaxy maps with Planck maps of cosmic microwave background (CMB) temperature and lensing convergence probe the growth of structure since z = 0.8. The signals are compared with a fiducial Planck ΛCDM model, and require an overall scaling in amplitude of Aκ = 0.901 ± 0.026 for the lensing cross-correlation and AISW = 0.984 ± 0.349 for the temperature cross-correlation, interpreted as the integrated Sachs–Wolfe effect. The ISW amplitude is consistent with the fiducial Λ cold dark matter (ΛCDM) prediction, but lies significantly below the prediction of the AvERA model of Rácz et al., which has been proposed as an alternative explanation for cosmic acceleration. Within ΛCDM, our low amplitude for the lensing cross-correlation requires a reduction either in fluctuation normalization or in matter density compared to the Planck results, so that $\Omega _\mathrm{ m}^{0.78}\sigma _8=0.297\pm 0.009$. In combination with the total amplitude of CMB lensing, this favours a shift mainly in density: Ωm = 0.274 ± 0.024. We discuss the consistency of this figure with alternative evidence. A conservative compromise between lensing and primary CMB constraints would require Ωm = 0.296 ± 0.006, where the 95 per cent confidence regions of both probes overlap.

Hang, Qianjun↗

Explainable AI for Multivariate Time Series Pattern Exploration: Latent Space Visual Analytics With Temporal Fusion Transformer and Variational Autoencoders in Power Grid Event Diagnosis

Detecting and analyzing complex patterns in multivariate time-series data is crucial for decision-making in urban and environmental system operations. However, challenges arise from the high dimensionality, intricate complexity, and interconnected nature of complex patterns, which hinder the understanding of their underlying physical processes. Existing AI methods often face limitations in interpretability, computational efficiency, and scalability, reducing their applicability in real-world scenarios. This paper proposes a novel visual analytics framework that integrates two generative AI models, Temporal Fusion Transformer (TFT) and Variational Autoencoders (VAEs), to reduce complex patterns into lower-dimensional latent spaces and visualize them in 2D using dimensionality reduction techniques such as PCA, t-SNE, and UMAP with DBSCAN. These visualizations, presented through coordinated and interactive views and tailored glyphs, enable intuitive exploration of complex multivariate temporal patterns, identifying patterns’ similarities and uncover their potential correlations for a better interpretability of the AI outputs. The framework is demonstrated through a case study on power grid signal data, where it identifies multi-label grid event signatures, including faults and anomalies with diverse root causes. Additionally, novel metrics and visualizations are introduced to validate the models and assess the performance, efficiency, and consistency of latent maps generated by VAE, which have been utilized in prior studies for latent space cartography and used as a benchmark in this study, and the emerging TFT architecture under various configurations. These analyses provide actionable insights for model parameter tuning and reliability improvements. Comparative results highlight that TFT achieves shorter run times and superior scalability to diverse time-series data shapes compared to VAE. This work advances fault diagnosis in multivariate time series, fostering explainable AI to support critical system operations.

Explainable AI↗

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb

Epigenomic mapping of enhancer-associated chromatin modifications facilitates the genome-wide discovery of tissue-specific enhancers in vivo. However, reliance on single chromatin marks leads to high rates of false-positive predictions. More sophisticated, integrative methods have been described, but commonly suffer from limited accessibility to the resulting predictions and reduced biological interpretability. Here we present the Limb-Enhancer Genie (LEG), a collection of highly accurate, genome-wide predictions of enhancers in the developing limb, available through a user-friendly online interface. We predict limb enhancers using a combination of > 50 published limb-specific datasets and clusters of evolutionarily conserved transcription factor binding sites, taking advantage of the patterns observed at previously in vivo validated elements. By combining different statistical models, our approach outperforms current state-of-the-art methods and provides interpretable measures of feature importance. Our results indicate that including a previously unappreciated score that quantifies tissue-specific nuclease accessibility significantly improves prediction performance. We demonstrate the utility of our approach through in vivo validation of newly predicted elements. Moreover, we describe general features that can guide the type of datasets to include when predicting tissue-specific enhancers genome-wide, while providing an accessible resource to the general biological community and facilitating the functional interpretation of genetic studies of limb malformations.

59 BASIC BIOLOGICAL SCIENCES↗

Galactic Rain: Cool Gas Inflows in Red Geyser Galaxies and Their Connection to Active Galactic Nuclei Activity and Interactions

Red geysers are a population of massive (logM/M ⊙ ~ 10.5), quiescent galaxies with large-scale but weak, bisymmetric ionized gas outflows, interpreted as signatures of ongoing, low-level active galactic nucleus (AGN) feedback. We investigate the kinematics and prevalence of cool (T ∼ 100–1000 K) neutral gas traced by Na I D absorption, and its connection to galaxy environment and AGN activity. Using 140 red geyser galaxies from the Sloan Digital Sky Survey-IV Mapping Nearby Galaxies at Apache Point Observatory (or MaNGA), we measure spatially resolved velocities and dispersions via double-Gaussian fits to the Na I D doublet. We find that ∼70% of the cool gas is inflowing, with a median velocity of ∼47 km s −1 (∼10% of the expected freefall velocity), and that it also exhibits kinematically ordered motions with σ NaD /σ* ∼ 0.4. Additionally, the Na I D absorption is more prevalent in red geysers than in a matched control sample, with a higher detection fraction (63% versus 40%) and reservoir areas ∼1.6 times larger. Acceleration (∼1 Myr) and accretion (∼20 Myr) timescales indicate that the Na I D-absorbing clouds are likely young and short-lived. Another intriguing result is that radio-detected red geysers (30% of the sample) show inflowing gas reservoirs ∼7 times larger than in non-radio systems. Similarly, galaxies subject to environmental effects host inflowing gas reservoirs ∼2.7 times larger than isolated red geysers. We take this as evidence that galaxy environments play a key role in replenishing the cool gas reservoirs of red geysers, fueling central AGN activity, sustaining radio emission, and regulating long-term quiescence. These findings reveal that quiescent systems are governed by cycles of inflow, feedback, and regulation.

Moghni, Arian [Univ. of California, Santa Cruz, CA↗

Land use and mapping

This summary is divided into two basic sections-one dealing with land use classification and delineation, and the other dealing with mapping. The term land use classification is used in respect to the actual use of land rather than land capability, land suitability, or the potential use of land. The classification of actual use of the land, as defined by man's activities that are related to the land, may be only inferred, rather than directly interpreted, in the case of the identification and classification of some surface features or vegetation cover types. Also, in the case of some surface features or vegetational cover types, the specific activity involving man's use of the land may not be designated in a four-level classification system until level 3 or level 4 is reached. Most investigations employed or implied a hierarchial land use classification scheme with more than two levels, but mainly addressed themselves to classifying and delineating surface features (land use) that would fall in the first two levels of a three- or four-level hierarchial scheme. Although not all investigators used a hierarchial classification scheme or concurred with the idea (computer-implemented classifications with digital data are not conducive to a hierarchial classification approach), the classification system proposed by the U.S. Department of the Interior is used as reference.

Joyce, A. T.↗

Search for scattered X-ray halos around variable sources - The X-ray halo of Cygnus X-1

The results of a program to search for the presence of halos due to X-ray scattering by interstellar grains in the line-of-sight to variable X-ray sources are reported. As part of this program, four Einstein HRI images of Cyg X-1 were examined. The analysis technique exploits the intrinsic aperiodic variability of this source to map the point response function of the optics. Any scattered halo present will not reflect short-term central source time variability, since such variability is smoothed by differential time delays of order days. Thus, a residual, nonvariable component to the surface brightness distribution (comprising about 12 percent or more of the source flux) is interpreted as a scattered halo. The Cyg X-1 halo is consistent with those of other sources found in previous studies using different techniques. Comparison is also made with a scattering model and, despite uncertainties in source spectrum and distance, reasonable agreement with the observatons is found using a standard interstellar grain model. The potential of X-ray scattering as a probe of the properties of interstellar grains is demonstrated.

Bode, M. F.↗

Remote sensing of wetland parameters related to carbon cycling

Measurement of the rates of important biogeochemical fluxes on regional or global scales is vital to understanding the geochemical and climatic consequences of natural biospheric processes and of human intervention in those processes. Remote data gathering and interpretation techniques were used to examine important cycling processes taking place in wetlands over large geographic expanses. Large area estimation of vegetative biomass and productivity depends upon accurate, consistent measurements of canopy spectral reflectance and upon wide applicability of algorithms relating reflectance to biometric parameters. Results of the use of airborne multispectral scanner data to map above-ground biomass in a Delaware salt marsh are shown. The mapping uses an effective algorithm linking biomass to measured spectral reflectance and a means to correct the scanner data for large variations in the angle of observation of the canopy. The consistency of radiometric biomass algorithms for marsh grass when they are applied over large latitudinal and tidal range gradients were also examined. Results of a 1 year study of methane emissions from tidal wetlands along a salinity gradient show marked effects of temperature, season, and pore-water chemistry in mediating flux to the atmosphere.

Bartlett, David S.↗

A Look at Seasonal Snow Cover and Snow Mass in the Southern Hemisphere from 1979-2006 Using SMMR and SSM/I Passive Microwave Data

Seasonal snow cover in extra-tropical areas of South America was examined in this study using passive microwave satellite data from the Scanning Multichannel Microwave Radiometer (SMMR) on board the Nimbus-7 satellite and from the Special Sensor Microwave Imagers (SSM/I) on board the Defense Meteorological Satellite Program (DMSP) satellites. For the period from 1979-2006, both snow cover extent and snow mass were estimated for the months of May-September. Most of the seasonal snow in South America occurs in the Patagonia region of Argentina. The average snow cover extent for July, the month with the greatest average extent during the 28-year period of record, is 321,674 sq km. The seasonal (May-September) 2 average snow cover extent was greatest in 1984 (464,250 sq km) and least in 1990 (69,875 sq km). In terms of snow mass, 1984 was also the biggest year (1.19 x 10(exp 13) kg) and 1990 was the smallest year (0.12 X 10(exp 13) kg). A strong relationship exists between the snow cover area and snow mass, correlated at 0.95, though no significant trend was found over the 28 year record for either snow cover extent or snow mass. For this long term climatology, snow mass and snow cover extent are shown to vary considerably from month to month and season to season. This analysis presents a consistent approach to mapping and measuring snow in South America utilizing an appropriate and readily available long term snow satellite dataset. This is the optimal dataset available, thus far, for deriving seasonal snow cover and snow mass in this region. Nonetheless, shallow snow, wet snow, snow beneath forests, as well as snow along coastal areas all may confound interpretation using passive microwave approaches. More work needs to be done to reduce the uncertainties in the data and hence, increase the confidence of the interpretation

Foster, James↗

Co-optimized machine-learned manifold models for large eddy simulation of turbulent combustion

Many modeling approaches in large eddy simulation (LES) of turbulent combustion employ a projection of the thermochemical state onto a low-dimensional manifold within state space to reduce the number of transported variables and hence computational cost. Flamelet-generated manifolds (FGM) is an example of a well-established, physics-based approach, but increasingly, principal component analysis (PCA) is being used as a data-driven method for generating manifold models. For both approaches, the nonlinear relationship between the location on the predefined manifold and the outputs of interest, such as reaction rates, can be tabulated or encoded in a neural network. This work proposes a new approach for manifold modeling that extends these existing approaches. A modified neural network structure simultaneously encodes the definition of the manifold variables, the nonlinear mapping, and the subfilter closure for LES. This allows all three of these aspects of the model to be co-optimized, generating a model from any source of combustion thermochemical state data. The manifold parameterizing variables are constrained to be linear combinations of species, as in FGM and PCA-based models, to aid in interpretability and implementation. For LES, subfilter variances of the manifold variables are also included as inputs. Two types of a priori analysis are performed to evaluate the new approach. In the first, the model is trained on data from one-dimensional premixed flames. In this case, the approach recovers the behavior of flamelet-based manifold approaches, and in fact slightly improves performance by identifying an optimized progress variable. The approach is also applied to data from direct numerical simulations of spherical ignition kernels in isotropic turbulence. For any specified manifold dimensionality, the new approach provides substantially lower prediction errors than a PCA-based model developed from the same data set. Additionally, the LES formulation of the new approach can provide accurate predictions for filtered reaction rates across a variety of filter widths.

97 MATHEMATICS AND COMPUTING↗

A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants

In all multicellular organisms, transcriptional networks orchestrate organ development. The Arabidopsis root, with its simple structure and indeterminate growth, is an ideal model to investigate the spatiotemporal transcriptional signatures underlying developmental trajectories. To map gene expression dynamics across root cell types and developmental time, we built a comprehensive, organ-scale atlas at single cell resolution. In addition to estimating developmental progressions in pseudotime, we employed the mathematical concept of optimal transport to infer developmental trajectories and identify their underlying regulators. To demonstrate the utility of the atlas to interpret new datasets, we profiled mutants for two key transcriptional regulators at single cell resolution, shortroot and scarecrow. We report transcriptomic and in vivo evidence for tissue trans-differentiation underlying a mixed cell identity phenotype in scarecrow. Our results support the atlas as a rich community resource for unraveling the transcriptional programs that specify and maintain cell identity to regulate spatiotemporal organ development.

59 BASIC BIOLOGICAL SCIENCES↗