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At least 1,333 records · Page 74

Creating ground truth for nanocrystal morphology: a fully automated pipeline for unbiased transmission electron microscopy analysis

Control over colloidal nanocrystal morphology (size, size distribution, and shape) is important for tailoring the functionality of individual nanocrystals and their ensemble behavior. Despite this, traditional methods to quantify nanocrystal morphology are laborious. New developments in automated morphology classification will accelerate these analyses but the assessment of machine learning models is limited by human accuracy for ground truth, causing even unsupervised machine learning models to have inherent bias. Herein, we introduce synthetic image rendering to solve the ground truth problem of nanocrystal morphology classification. By simulating 2D images of nanocrystal shapes via a function of high-dimensional parameter space, we trained a convolutional neural network to link unique morphologies to their simulated parameters, defining nanocrystal morphology quantitatively rather than qualitatively. An automated pipeline then processes, quantitatively defines, and classifies nanocrystal morphology from experimental transmission electron microscopy (TEM) images. Using improved computer vision techniques, 42,650 nanocrystals were identified, assessed, and labeled with quantitative parameters, offering a 600-fold improvement in efficiency over best-practice manual measurements. Further, a classification algorithm was trained with a prediction accuracy of 99.5%, which can successfully analyze a range of concave, convex, and irregular nanocrystal shapes. The resulting pipeline was applied to differentiating two syntheses of nominally cuboidal CsPbBr 3 nanocrystals and uniquely classifying binary nickel sulfide nanocrystal phase based on morphology. This pipeline provides a simple, efficient, and unbiased method to quantify nanocrystal morphology and represents a practical route to construct large datasets with an absolute ground truth for training unbiased morphology-based machine learning algorithms.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

An algorithm to locate the centers of baryon acoustic oscillations

The cosmic structure formed from baryon acoustic oscillations (BAO) in the early universe is imprinted in the galaxy distribution observable in large-scale surveys and is used as a standard ruler in contemporary cosmology. Typically, BAOs are detected as a preferential length scale in two-point statistics, which gives little information about the location of the BAO structures in real space. The aim of the algorithm described in this paper is to find probable centers of BAOs in the cosmic matter distribution. The algorithm convolves the three-dimensional distribution of matter density with a spherical shell kernel of variable radius placed at different locations. The locations that correspond to the highest values of the convolution correspond to the probable centers of BAOs. This method is realized in an open-source, computationally efficient algorithm. Here, we describe the algorithm and present the results of applying it to the SDSS DR9 CMASS survey and associated mock catalogs. A detailed performance study demonstrates the ability of the algorithm to locate BAO centers and in doing so presents a novel detection of the BAO scale in galaxy surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

ConKer: An algorithm for evaluating correlations of arbitrary order

Context. High order correlations in the cosmic matter density have become increasingly valuable in cosmological analyses. However, computing these correlation functions is computationally expensive. Aims. We aim to circumvent these challenges by developing a new algorithm called ConKer for estimating correlation functions. Methods. This algorithm performs convolutions of matter distributions with spherical kernels using FFT. Since matter distributions and kernels are defined on a grid, it results in some loss of accuracy in the distance and angle definitions. We study the algorithm setting at which these limitations become critical and suggest ways to minimize them. Results. ConKer is applied to the CMASS sample of the SDSS DR12 galaxy survey and corresponding mock catalogs, and is used to compute the correlation functions up to correlation order n = 5. We compare the n = 2 and n = 3 cases to traditional algorithms to verify the accuracy of the new algorithm. We perform a timing study of the algorithm and find that three of the four distinct processes within the algorithm are nearly independent of the catalog size N , while one subdominant component scales as O ( N ). The dominant portion of the calculation has complexity of O ( N c 4/3 log N c ), where N c is the of cells in a three-dimensional grid corresponding to the matter density. Conclusions. We find ConKer to be a fast and accurate method of probing high order correlations in the cosmic matter density, then discuss its application to upcoming surveys of large-scale structure.

79 ASTRONOMY AND ASTROPHYSICS↗

The discovery of a radio galaxy of at least 5 Mpc

Context. Giant radio galaxies (GRGs, or colloquially ‘giants’) are the Universe’s largest structures generated by individual galaxies. They comprise synchrotron-radiating active galactic nucleus ejecta and attain cosmological (megaparsec-scale) lengths. However, the main mechanisms that drive their exceptional growth remain poorly understood. Aims. To deduce the main mechanisms that drive a phenomenon, it is usually instructive to study extreme examples. If there exist host galaxy characteristics that are an important cause for GRG growth, then the hosts of the largest GRGs are likely to possess them. Similarly, if there exist particular large-scale environments that are highly conducive to GRG growth, then the largest GRGs are likely to reside in them. For these reasons, we aim to perform a case study of the largest GRG available. Methods. We reprocessed the LOFAR Two-Metre Sky Survey DR2 by subtracting compact sources and performing multi-scale CLEAN de-convolutions at 60" and 90" resolution. The resulting images constitute the most sensitive survey yet for radio galaxy lobes, whose diffuse nature and steep synchrotron spectra have allowed them to evade previous detection attempts at higher resolution and shorter wavelengths. We visually searched these images for GRGs. Results. We have discovered Alcyoneus, a low-excitation radio galaxy with a projected proper length l p = 4.99 ± 0.04 Mpc. Both its jets and lobes are detected at very high significance, and the SDSS-based identification of the host, at spectroscopic redshift z spec = 0.24674 ± 6 × 10 -5 , is unambiguous. The total luminosity density at ν = 144 MHz is L ν = 8 ± 1 × 10 25 W Hz -1 , which is below average, though near median (percentile 45 ± 3%) for GRGs. The host is an elliptical galaxy with a stellar mass M* = 2.4 ± 0.4 × 10 11 M ⊙ and a super-massive black hole mass M• = 4 ± 2 × 10 8 M ⊙ , both of which tend towards the lower end of their respective GRG distributions (percentiles 25 ± 9% and 23 ± 11%). The host resides in a filament of the Cosmic Web. Through a new Bayesian model for radio galaxy lobes in three dimensions, we estimate the pressures in the megaparsec-cubed-scale northern and southern lobes to be P min,1 = 4.8 ± 0.3 × 10 -16 Pa and P min,2 = 4.9 ± 0.6 × 10 -16 Pa, respectively. The corresponding magnetic field strengths are B min,1 = 46 ± 1 pT and B min,2 = 46 ± 3 pT. Conclusions. We have discovered what is in projection the largest known structure made by a single galaxy – a GRG with a projected proper length l p = 4.99 ± 0.04 Mpc. The true proper length is at least l min = 5.04 ± 0.05 Mpc. Beyond geometry, Alcyoneus and its host are suspiciously ordinary: the total low-frequency luminosity density, stellar mass, and super-massive black hole mass are all lower than, though similar to, those of the medial GRG. Thus, very massive galaxies or central black holes are not necessary to grow large giants, and, if the observed state is representative of the source over its lifetime, neither is high radio power. A low-density environment remains a possible explanation. The source resides in a filament of the Cosmic Web, with which it might have significant thermodynamic interaction. The pressures in the lobes are the lowest hitherto found, and Alcyoneus therefore represents the most promising radio galaxy yet to probe the warm–hot inter-galactic medium.

79 ASTRONOMY AND ASTROPHYSICS↗

HOLISMOKES IX. Neural network inference of strong-lens parameters and uncertainties from ground-based images

Modeling of strong gravitational lenses is a necessity for further applications in astrophysics and cosmology. With the large number of detections in current and upcoming surveys, such as the Rubin Legacy Survey of Space and Time (LSST), it is pertinent to investigate automated and fast analysis techniques beyond the traditional and time-consuming Markov chain Monte Carlo sampling methods. Building upon our (simple) convolutional neural network (CNN), we present here another CNN, specifically a residual neural network (ResNet), that predicts the five mass parameters of a singular isothermal ellipsoid (SIE) profile (lens center x and y, ellipticity e x and e y , Einstein radius θ E ) and the external shear (γ ext, 1 , γ ext, 2 ) from ground-based imaging data. In contrast to our previous CNN, this ResNet further predicts the 1σ uncertainty for each parameter. To train our network, we use our improved pipeline to simulate lens images using real images of galaxies from the Hyper Suprime-Cam Survey (HSC) and from the Hubble Ultra Deep Field as lens galaxies and background sources, respectively. We find very good recoveries overall for the SIE parameters, especially for the lens center in comparison to our previous CNN, while significant differences remain in predicting the external shear. From our multiple tests, it appears that most likely the low ground-based image resolution is the limiting factor in predicting the external shear. Given the run time of milli-seconds per system, our network is perfectly suited to quickly predict the next appearing image and time delays of lensed transients. Therefore, we use the network-predicted mass model to estimate these quantities and compare to those values obtained from our simulations. Unfortunately, the achieved precision allows only a first-order estimate of time delays on real lens systems and requires further refinement through follow-up modeling. Nonetheless, our ResNet is able to predict the SIE and shear parameter values in fractions of a second on a single CPU, meaning that we are able to efficiently process the huge amount of galaxy-scale lenses expected in the near future.

79 ASTRONOMY AND ASTROPHYSICS↗

ZTF SN Ia DR2: An environmental study of Type Ia supernovae using host galaxy image decomposition

The second data release of Type Ia supernovae (SNe Ia) observed by the Zwicky Transient Facility has provided a homogeneous sample of 3628 SNe Ia with photometric and spectral information. This unprecedented sample size enables us to better explore our currently tentative understanding of the dependence of the host environment on SN Ia properties. In this paper, we make use of two-dimensional image decomposition to model the host galaxies of SNe Ia. We model elliptical galaxies as well as disc and spiral galaxies with or without central bulges and bars. This allows for the categorisation of SN Ia based on their morphological host environment, as well as the extraction of intrinsic galaxy properties corrected for both cosmological and atmospheric effects, through point-spread-function (PSF) convolution. We find that although this image decomposition technique leads to a significant bias towards elliptical galaxies in our final sample of processed galaxies, the overall results are still robust. By successfully modelling 728 host galaxies, we find that the photometric properties of SNe Ia found in discs and in elliptical galaxies correlate fundamentally differently with their host environment. We identified strong linear relations between light-curve stretch and our model-derived galaxy colour for both the elliptical (16.8σ) and disc (5.1σ) subpopulations of SNe Ia. Lower-stretch SNe Ia are found in redder environments, which we identify as an age and/or metallicity effect. Within the subpopulation of SNe Ia found in disc-containing galaxies, we find a significant linear trend (6.1σ) between light-curve stretch and model-derived local r-band surface brightness, which we link to the age and metallicity gradients found in disc galaxies. SN Ia colour shows little correlation with the host environment, as is seen in the literature. We do identify a possible dust effect in our model-derived surface brightness (3.3σ) for SNe Ia in disc galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

Beyond the two-point correlation: Constraining primordial non-Gaussianity with density-perturbation moments

Constraining primordial non-Gaussianity (PNG) on the large-scale cosmic structure (LSS) is an important step in understanding properties of the early Universe, specifically in distinguishing between different inflationary models. Measuring PNG relies on evaluating the scale-dependent correlations in the density field. New summary statistics beyond the two- and three-point correlation functions in configuration space and their Fourier-space counterparts, the power- and bispectrum may provide increased sensitivity. We introduce a new method for extracting the PNG signal imprinted on the LSS by using the first three Gaussian moments of the normalized correlation in density perturbations, evaluated on varying distance scales. We aim to assess this method’s sensitivity to local PNG, parameterized by f NL . We performed spherical convolutions on a range of scales on dark-matter-halo simulations to measure the scale-dependent correlations in the density field. From these, we computed the first three moments and compared them to a model expectation vector, parameterized to the second power in f NL . Our method provides about 21% improvement in sensitivity to f NL with respect to using the two-point correlation function alone. Notably, we find that the second moment alone carries nearly as much constraining power as the mean, highlighting the potential of higher order statistics. Given its simplicity and efficiency, this framework is well suited for application to current and upcoming large-scale surveys such as the Dark Energy Spectroscopic Instrument (DESI).

early universe↗

Real-Time Movement-Based Traffic Volume Prediction at Signalized Intersections

The traffic volume of each movement at signalized intersections can provide valuable information on real-time traffic conditions that enable traffic control systems to dynamically respond to the fluctuated traffic demands. Real-time movement-based traffic volume prediction is challenging due to various nonlinear spatial relationships at different locations/approaches and the complicated underlying temporal dependencies. In this study, a novel deep intersection spatial-temporal network (DISTN) is developed for real-time movement-based traffic volume prediction at signalized intersections, which considers both spatial and temporal features by the convolutional neural network (CNN) and long short-term memory (LSTM), respectively. In addition, the within-day, daily, and weekly periodic trends of traffic volume are also considered in the proposed model. This is the first time that a deep-learning method has been applied for movement-based traffic volume prediction at signalized intersections. In the numerical experiment, the proposed model is evaluated using real-world data and simulation data to demonstrate its effectiveness. The impacts of various structures of traffic networks on the proposed model are also discussed. Results show that the proposed model outperforms some of the state-of-the-art volume prediction methods currently in the literature.

99 GENERAL AND MISCELLANEOUS↗

Machine learning surrogate models for Landau fluid closure

The first result of applying the machine/deep learning technique to the fluid closure problem is presented in this letter. As a start, three different types of neural networks (multilayer perceptron (MLP), convolutional neural network (CNN) and two-layer discrete Fourier transform (DFT) network) were constructed and trained to learn the well-known Hammett-Perkins Landau fluid closure in configuration space. We found that in order to train a well-preformed network, a minimum size of training data set is needed; MLP also requires a minimum number of neurons in the hidden layers equals to the degrees of freedom in Fourier space despite training data is fed in configuration space. Out of three models DFT performs the best for the clean data most likely due to the existence of nice Fourier expression for Hammett-Perkins closure but it is least robust with respect to input noise. Overall, with appropriate tuning and optimization, all three neural networks are able to accurately predict Hammett-Perkins closure and reproduce the inherit nonlocal feature, suggesting a promising path to calculate more sophisticated closures with the machine/deep learning technique.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Microparticle cloud imaging and tracking for data-driven plasma science

Oceans of image and particle track data encountered in plasma interactions with microparticle clouds motivate development and applications of machine-learning (ML) algorithms. A local-constant-velocity tracker, a Kohonen neural network or self-organizing map, the feature tracking kit, and U-Net are described and compared with each other for microparticle cloud datasets generated from exploding wires, dusty plasmas, and atmospheric plasmas. Particle density and the signal-to-noise ratio have been identified as two important factors that affect the tracking accuracy. Fast Fourier transform is used to reveal how U-Net, a deep convolutional neural network developed for non-plasma applications, achieves the improvements for noisy scenes. Viscous effects are revealed in the ballistic motions of the particles from the exploding wires and atmospheric plasmas. Subdiffusion of microparticles satisfying Δr 2 ∝t k (k=0.84±0.02) is obtained from the dusty plasma datasets. Microparticle cloud imaging and tracking, when enhanced with data and ML models, present new possibilities for plasma physics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Development and modeling for a small-scale, rapidly heated high explosives initiation time (HEIT) experiment

Most small-scale assessments of explosive sensitivity, including the popular drop-weight impact test, convolute thermal and mechanical phenomena to the extent that it has been extremely challenging to decipher how an explosive ignites and propagates reactions. For instance, an impact generates heat through a range of dissipation mechanisms, which can in turn, depending on the reaction rates of the explosive, lead to chemical decomposition. To deconvolute the various contributions to the sub-shock initiation and propagation of explosive reactions, we describe the development and modeling of the High Explosives Initiation Time (HEIT) test - a new, small-scale, high-throughput experiment designed to rapidly heat milligram quantities of energetic materials confined within small diameter steel needles. Specifically, we have modeled and designed a 250 joule pulsed power system capable of rapidly delivering electrical current to the needles, resulting in rapid heat delivery to the sample. In conclusion, the energy deposition rate into the sample is controlled by different transmission line topologies. Modeling in COMSOL is performed to understand the energy required to heat up the explosive sample.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Equation of motion coupled-cluster cumulant approach for intrinsic losses in x-ray spectra

We present an equation of motion coupled cluster approach for calculating and understanding intrinsic inelastic losses in core level x-ray absorption spectra (XAS). The method is based on a factorization of the transition amplitude in the time-domain, which leads to a convolution of an effective one-body spectrum and the core-hole spectral function. The spectral function characterizes these losses in terms of shake-up excitations and satellites, and is calculated using a cumulant representation of the core-hole Green’s function that includes non-linear corrections. The one-body spectrum also includes orthogonality corrections that enhance the XAS at the edge.

Rehr, John J.↗

AI-enabled high-resolution scanning coherent diffraction imaging

Ptychographic imaging is a powerful means of imaging beyond the resolution limits of typical x-ray optics. Capturing recovered images from raw ptychographic data, however, requires the solution of an inverse problem, namely, phase retrieval. Phase retrieval algorithms are computationally expensive, which precludes real-time imaging. In this work, we propose PtychoNN, an approach to solve the ptychography data inversion problem based on a deep convolutional neural network. We demonstrate how the proposed method can be used to predict real-space structure and phase at each scan point solely from the corresponding far-field diffraction data. Our results demonstrate the practical application of machine learning to recover high fidelity amplitude and phase contrast images of a real sample hundreds of times faster than current ptychography reconstruction packages. Furthermore, by overcoming the constraints of iterative model-based methods, we can significantly relax sampling constraints on data acquisition while still producing an excellent image of the sample. Besides drastically accelerating acquisition and analysis, this capability has profound implications for the imaging of dose sensitive, dynamic, and extremely voluminous samples.

47 OTHER INSTRUMENTATION↗

Super-resolution and signal separation in contact Kelvin probe force microscopy of electrochemically active ferroelectric materials

In this work, imaging mechanisms in contact Kelvin probe force microscopy (cKPFM) are explored via information theory-based methods. Gaussian processes are used to achieve super-resolution in the cKPFM signal, effectively extrapolating across the spatial and parameter space. Tensor factorization is applied to reduce the multidimensional signal to the tensor convolution of the scalar functions that show a clear trending behavior with the imaging parameters. These methods establish a workflow for the analysis of the multidimensional datasets that can then be related to the relevant physical mechanisms. We also provide an interactive Google Colab notebook that goes through all the analyses discussed in the paper.

36 MATERIALS SCIENCE↗

Phase behavior of continuous-space systems: A supervised machine learning approach

The phase behavior of complex fluids is a challenging problem for molecular simulations. Supervised machine learning (ML) methods have shown potential for identifying the phase boundaries of lattice models. In this work, we extend these ML methods to continuous-space systems. We propose a convolutional neural network model that utilizes grid-interpolated coordinates of molecules as input data of ML and optimizes the search for phase transitions with different filter sizes. We test the method for the phase diagram of two off-lattice models, namely, the Widom–Rowlinson model and a symmetric freely jointed polymer blend, for which results are available from standard molecular simulations techniques. The ML results show good agreement with results of previous simulation studies with the added advantage that there is no critical slowing down. We find that understanding intermediate structures near a phase transition and including them in the training set is important to obtain the phase boundary near the critical point. The method is quite general and easy to implement and could find wide application to study the phase behavior of complex fluids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Experimental and theoretical study of energy transfer in a chromophore triad: What makes modeling dynamics successful?

Simulation of electronic dynamics in realistically large molecular systems is a demanding task that has not yet achieved the same level of quantitative prediction already realized for its static counterpart. This is particularly true for processes occurring beyond the Born–Oppenheimer regime. Non-adiabatic molecular dynamics (NAMD) simulations suffer from two convoluted sources of error: numerical algorithms for dynamics and electronic structure calculations. While the former has gained increasing attention, particularly addressing the validity of ad hoc methodologies, the effect of the latter remains relatively unexplored. Indeed, the required accuracy for electronic structure calculations to reach quantitative agreement with experiment in dynamics may be even more strict than that required for static simulations. In this study, we address this issue by modeling the electronic energy transfer in a donor–acceptor–donor (D–A–D) molecular light harvesting system using fewest switches surface hopping NAMD simulations. In the studied system, time-resolved experimental measurements deliver complete information on spectra and energy transfer rates. Subsequent modeling shows that the calculated electronic transition energies are “sufficiently good” to reproduce experimental spectra but produce over an order of magnitude error in simulated dynamical rates. We further perform simulations using artificially shifted energy gaps to investigate the complex relationship between transition energies and modeled dynamics to understand factors affecting non-radiative relaxation and energy transfer rates.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Rapid 3D nanoscale coherent imaging via physics-aware deep learning

Phase retrieval, the problem of recovering lost phase information from measured intensity alone, is an inverse problem that is widely faced in various imaging modalities ranging from astronomy to nanoscale imaging. The current process of phase recovery is iterative in nature. As a result, the image formation is time consuming and computationally expensive, precluding real-time imaging. Here, we use 3D nanoscale X-ray imaging as a representative example to develop a deep learning model to address this phase retrieval problem. We introduce 3D-CDI-NN, a deep convolutional neural network and differential programing framework trained to predict 3D structure and strain, solely from input 3D X-ray coherent scattering data. Our networks are designed to be “physics-aware” in multiple aspects; in that the physics of the X-ray scattering process is explicitly enforced in the training of the network, and the training data are drawn from atomistic simulations that are representative of the physics of the material. We further refine the neural network prediction through a physics-based optimization procedure to enable maximum accuracy at lowest computational cost. 3D-CDI-NN can invert a 3D coherent diffraction pattern to real-space structure and strain hundreds of times faster than traditional iterative phase retrieval methods. Our integrated machine learning and differential programing solution to the phase retrieval problem is broadly applicable across inverse problems in other application areas.

77 NANOSCIENCE AND NANOTECHNOLOGY↗