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The overall goal of this work was to perform an in-depth analysis of resilience schemes adapted to the Asynchronous Many-Task (AMT) programming and execution model with the goal of informing the Sandia Advanced Simulation and Computing (ASC) program's application development strategy for next generation platforms (NGPs).
The Advanced Simulation and Computing (ASC) Transport project’s Jayenne Implicit Monte Carlo (IMC) transport library now includes an unstructured mesh capability and is available in a Lagrangian Applications Project (LAP) code. In this presentation, we discuss recent work by the LAP and Transport projects that provides an IMC transport capability for radiation hydrodynamics in the Lagrangian frame. Verification problems testing the new capabilities have been simulated and analyzed, i.e. Marshak wave, Mach 45, Su-Olsen, picket fence, and crooked pipe, both in one and two dimensions. We also present results on two stretch goal problems: a simplified COAX high energy density physics experiment and a supernova shock simulation. Finally, we identify current limitations and future work needed to bring a full capability to the user community.
In this document, the Advanced Simulation and Computing (ASC) Transport Project’s Jayenne team presents evidence that the Los Alamos National Laboratory (LANL) Level 2 milestone statement, Demonstrate a new unstructured mesh IMC x-ray transport capability in LAP codes, due Q4 FY20, has been satisfied with the release and integration of the Jayenne team’s Implicit Monte Carlo (IMC) solver libraries into the lumos multiphysics solver. The Jayenne project’s software includes the algorithms and features prescribed by the milestone description. The lumos software is maintained by the Lagrangian Applications Project (LAP) along with the hydrodynamics code flag and operates under the same ASC program as Jayenne. A set of demonstration problems has been specified, executed, and analyzed.
The 2018 Predictive Engineering Science Panel (PESP) is pleased with Sandia's response to our 2018 PESP Final Report recommendations. We have read the response memorandum, applaud the overall Electromagnetic Radiation (EMR) Action Plan and Path Forward and compliment Sandia's progress to date. The panel identifies no pressing issues and proposes no course corrections. The panel does offer two high-level suggestions for the Advanced Simulation and Computing (ASC) Program Office.
Focal Area: This white paper responds to Focal area III by exploring data fusion, learning and explainable AI methods in characterizing hydrological extremes and interconnections. It also addresses Focal area II by using probabilistic AI and ensemble ML for predicting extremes and compound extremes. Science Challenge: A key question associated with the integrated water (or hydrological) cycle grand challenge in the Earth and Environmental Systems Sciences Division (EESSD) strategic plan, is how the frequency and intensity of hydrological events will change. Prediction of the tail behavior (extremes) of the hydrological cycle is especially challenging, because of their stochasticity and low probability. These extreme events and their compound impacts have significant societal and economic consequences. It is anticipated for the next-generation Earth System models (ESMs), that model predictability of the water cycle will improve with increased resolution (e.g., regionally refined E3SM), advanced software and computational architectures, and improved model physics based on the data from ARM measurements and high-fidelity models. However, the challenges for predictability of low-probability high-impact extreme events will unlikely be alleviated with conventional modeling and data-driven approaches, as ESMs are calibrated largely for capturing the high-frequency mean climate states. Recent AI and ML applications have shown great potential in quantifying well-defined climate extremes (e.g., supervised learning of tropical cyclones/atmospheric rivers by ClimateNet1) but few efforts are dedicated to compound events, extreme drivers and uncertainty estimation. We envision the opportunity to develop and apply ML and interpretable AI methods extended on the existing efforts, specifically, for: (1) identification of compound extremes, (2) diagnosing drivers of extremes, (3) bias correction in extreme predictions and (4) probabilistic modeling of extremes.
The total energy consumption in the U.S. has been rising steadily for decades, and it currently amounts to ~98,000 TBtu/yr, with approximately 30% of this total attributable to the industrial sector. Reasonable estimates indicate that 45–55% of total industry energy consumption derives from chemical separations, and for example, over 120 TBtu/yr alone is used in carrying out olefin/paraffin separations via energy-intensive cryogenic distillation. Therefore, the pursuit of new, even radically different approaches to some of the most energy-intensive industrial separations processes is an imperative scientific pursuit for reducing energy consumption toward a more sustainable future. Adsorbent and membrane-based separations can require a fraction of the energy needed for distillation methods, and as such are considered promising solutions for balancing increasing energy demand in the U.S. with the need for a massive reduction in energy consumption. Although considerable research effort has been devoted to the design of materials capable of carrying out various gas separations, usually operating through size-selective, chemisorptive, or physisorptive mechanisms, it remains a great challenge to design materials that function adequately for real-world applications. Indeed, the chemical and physical differences between molecules in gas mixtures of interest are often small, and therefore it is necessary, through the use of nanoscience and synthetic chemistry, to engineer unprecedented molecular-level control in adsorbate–adsorbent interactions. The overarching mission of the Center for Gas Separations (CGS) was to discover fundamental innovations that have the potential to dramatically reduce the energy associated with critical gas separations. In particular, the CGS developed novel synthetic routes, guided by molecular chemistry principles, as well as advanced characterization and computational methods, that have enabled the discovery of new materials and membranes tailor-made to exhibit exceptional performance for a range of gas separations processes, as required in the clean use of fossil fuels and in reducing CO 2 emissions from industry. A challenge of this magnitude required the collaboration and synergy of a large team of researchers with expertise in materials synthesis, characterization, and computations. During the 11-year project period, the CGS created a range of new materials within the family of highly-tunable, porous solids known as metal–organic frameworks (MOFs). These new frameworks demonstrate novel mechanisms for key industrial gas separations, including revolutionary new cooperative adsorption processes that enable low-energy CO 2 and CO capture, and are capable of efficiently separating olefins from paraffins, O 2 from air, and the shape-selective separation of alkane isomers. In addition, the CGS developed new strategies for incorporating these materials into composite membranes toward highly efficient and selective membrane-based separations. As a testament to the success of the CGS, two start-up companies, Mosaic Materials,4 Inc. and Flux Technology, Inc., grew out of these research efforts, and these companies are seeking to commercialize MOF and composite membranes materials for key separations in industry, including large-scale CO 2 capture and hydrocarbon separations, respectively. Another company, framergy, Inc., licensed IP resulting from CGS research toward the commercialization of adsorbents for various energy-relevant applications.
Starting in 2019, the Lagrangian Applications Project (LAP) and the Transport Project set out to develop a new ALE/Lagrangian radiation-hydrodynamics (RH) capability in a new code product named LUMOS. This work was done under the guidance of the Advanced Simulation and Computing (ASC) program with the goal of producing software capable of leveraging the high-order thermal radiative transfer (TRT) solvers provided by the Jayenne and Capsaicin software projects. This capability supplements the existing gray diffusion solver that is currently available in LAP’s FLAG code [1, 2, 3] for RH. The remainder of this memo describes the coupling of the radiation and hydrodynamics solvers within LAP’s LUMOS code. Initially delivered in 2020 as part of an L2 milestone [4], this capability continues to mature in FY21 with more efficient and robust algorithms, new support for ALE, and support for mixed materials per cell. Today, LUMOS is provided as a standard end-user product in the suite of LAP tools provided in each release cycle. Code access can be requested at https://asc.lanl.gov.
The final review for the FY21 Advanced Simulation and Computing (ASC) Computational Systems and Software Environments (CSSE) L2 Milestone #7840 was conducted on August 25th, 2021 at Sandia National Laboratories in Albuquerque, New Mexico. The review committee/panel unanimously agreed that the milestone has been successfully completed, exceeding expectations on several of the key deliverables.
As part of the Advanced Simulation and Computing Verification and Validation (ASCVV) program, a 0.3-m diameter hydrocarbon pool fire with multiple fuels was modeled and simulated. In the study described in this report, systematic examination was performed on the radiation model used in a series of coupled Fuego/Nalu simulations. A calibration study was done with a medium-scale methanol pool fire and the effect of calibration traced throughout the radiation model. This analysis provided a more detailed understanding of the effect of radiation model parameters on each other and on other quantities in the simulations. Heptane simulation results were also examined using this approach and possible areas for further improvement of the models were identified. The effect of soot on radiative losses was examined by comparing heptane and methanol results.
The ENIGMA science focus area (SFA) is a multi-disciplinary, multi-institutional research effort focused on addressing foundational knowledge gaps in environmental microbial communities by studying groundwater and sediment microbiomes in the shallow subsurface at the contaminated Oak Ridge Reservation (ORR). We seek to discover and characterize the reciprocal interactions between the microbial communities and the geochemical and geophysical parameters of the shallow subsurface within the contamination plume. The primary goal of this subcontract was to develop experimental and computational tools to advance our understanding of microbial adaptation and community assembly in contaminated environments, with specific efforts in high-throughput genomic methods, microbial ecology tools, and studies of heavy metal contamination impacts.
Current Ni-based alloys used in turbine blade applications are operating at 1100°C which is approximately 90% of the solidus of Ni-based alloys. Further increases in temperature can be achieved only through the use of alloys with higher solidus temperatures such as refractory alloys which include Mo, Nb, W, Ta alloys. Niobium has a unique combination of physical properties that include a high melting point (2468°C), lowest density (8.57 g/cc), and the lowest modulus amongst refractory alloys, a good thermal conductivity that increases from 45 W/mK at room temperature to 62 W/mK at 1093°C, good ductility with fabricability using traditional techniques, high strength, good creep resistance, and general chemical inactivity. Hence niobium alloys offer many advantages for use at the desired temperature of 1300°C. One of the major deterrents to the use of niobium and its alloys at high temperatures is achieving good oxidation resistance. In addition, achieving balanced properties of room temperature strength, ductility, fracture toughness, high temperature strength, and creep resistance required for 1300°C operation at a density of 9 g/cm 3 is extremely challenging since the addition of W which is a potent strengthener increases the density of the alloy. This project seeks to enable the development of a tri-layered turbine blade that can operate continuously at 1300°C with the core of the turbine blade providing good creep resistance, the second layer providing improved oxidation resistance over the core layer, and the third layer being an environmental barrier providing oxidation resistance. The objective of this Phase 1 project was to use computational modeling and advanced characterization tools to develop two classes of Nb alloys which could be used as the core layer and the transition layer. The first class of alloys developed in this project was a Nb-alloy designed to serve as the turbine blade core with excellent room temperature strength, ductility, and high temperature strength and creep resistance required for 1300°C operation. These alloys were designed to contain sufficient solute solution strengthening elements (W, Mo) but constrained by the density of alloy, along with the addition of elements such as Zr, Hf, Ta, C, and N to achieve a combination of primary and secondary carbide precipitation. A total of 38 “creep-resistant” alloys were designed and cast during the duration of the project. Processing techniques were developed to keep the oxygen contents as low as possible with typical oxygen contents less than 250 ppm. One alloy with a density of < 9.5 g/cc was successful in meeting the Phase 2 intermediate project mechanical property milestone requirements of room temperature ductility greater than 1.0%, 1200°C creep strain of less than 3% at 150 MPa and 100 hours in vacuum, and with solidus temperature greater than 1500ᵒC. The second class of alloys was designed to be a Nb-rich alloy with improved oxidation resistance when compared to the core layer and was designed specifically to be compatible with the core layer and the outer environmental barrier coating. This Nb- alloy will be specifically designed to be microstructurally stable at these temperatures when in contact with the core alloy and provide protection against catastrophic failure of the barrier coating. Two alloys were cast and processed but further development was discontinued to focus on the development of the creep resistant alloy.
Current Ni-based alloys used in turbine blade applications are operating at 1100°C which is approximately 90% of the solidus of Ni-based alloys. Further increases in temperature can be achieved only through the use of alloys with higher solidus temperatures such as refractory alloys which include Mo, Nb, W, Ta alloys. Niobium has a unique combination of physical properties that include a high melting point (2468°C), lowest density (8.57 g/cc), and the lowest modulus amongst refractory alloys, a good thermal conductivity that increases from 45 W/mK at room temperature to 62 W/mK at 1093°C, good ductility with fabricability using traditional techniques, high strength, good creep resistance, and general chemical inactivity. Hence niobium alloys offer many advantages for use at the desired temperature of 1300°C. One of the major deterrents to the use of niobium and its alloys at high temperatures is achieving good oxidation resistance. In addition, achieving balanced properties of room temperature strength, ductility, fracture toughness, high temperature strength, and creep resistance required for 1300°C operation at a density of 9 g/cm 3 is extremely challenging since the addition of W which is a potent strengthener increases the density of the alloy. This project seeks to enable the development of a tri-layered turbine blade that can operate continuously at 1300°C with the core of the turbine blade providing good creep resistance, the second layer providing improved oxidation resistance over the core layer, and the third layer being an environmental barrier providing oxidation resistance. The objective of this Phase 1 project was to use computational modeling and advanced characterization tools to develop two classes of Nb alloys which could be used as the core layer and the transition layer.
Genomic and metagenomic sequence data provides an unprecedented ability to re-examine findings, offering a transformative potential for advancing research, developing computational tools, enhancing clinical applications, and fostering scientific collaboration. However, effective and ethical reuse of genomics data is hampered by numerous technical and social challenges. The International Microbiome and Multi’Omics Standards Alliance (IMMSA, https://www.microbialstandards.org/) and the Genomic Standards Consortium (GSC, https://gensc.org) hosted a 5-part seminar series “A Year of Data Reuse” in 2024 to explore challenges and opportunities of data reuse and reproducibility across disparate domains of the genomic sciences. Addressing these challenges will require a multifaceted approach, including common metadata reporting, clear communication, standardized protocols, improved data management infrastructure, ethical guidelines, and collaborative policies that prioritize transparency and accessibility. We offer strategies to enable responsible and technically feasible data reuse, recognition of data reproducibility challenges, and emphasizing the importance of cross-disciplinary efforts in the pursuit of open science and data-driven innovation.
Polymerase eta (or Pol η or POLH) is a specialized DNA polymerase that is able to bypass certain blocking lesions, such as those generated by ultraviolet radiation (UVR) or cisplatin, and is deployed to replication foci for translesion synthesis as part of the DNA damage response (DDR). Inherited defects in the gene encoding POLH (a.k.a., XPV) are associated with the rare, sun-sensitive, cancer-prone disorder, xeroderma pigmentosum, owing to the enzyme’s ability to accurately bypass UVR-induced thymine dimers. In standard-of-care cancer therapies involving platinum-based clinical agents, e.g., cisplatin or oxaliplatin, POLH can bypass platinum-DNA adducts, negating benefits of the treatment and enabling drug resistance. POLH inhibition can sensitize cells to platinum-based chemotherapies, and the polymerase has also been implicated in resistance to nucleoside analogs, such as gemcitabine. POLH overexpression has been linked to the development of chemoresistance in several cancers, including lung, ovarian, and bladder. Co-inhibition of POLH and the ATR serine/threonine kinase, another DDR protein, causes synthetic lethality in a range of cancers, reinforcing that POLH is an emerging target for the development of novel oncology therapeutics. Using a fragment-based drug discovery approach in combination with an optimized crystallization screen, we have solved the first X-ray crystal structures of small novel drug-like compounds, i.e., fragments, bound to POLH, as starting points for the design of POLH inhibitors. The intrinsic molecular resolution afforded by the method can be quickly exploited in fragment growth and elaboration as well as analog scoping and scaffold hopping using medicinal and computational chemistry to advance hits to lead. An initial small round of medicinal chemistry has resulted in inhibitors with a range of functional activity in an in vitro biochemical assay, leading to the rapid identification of an inhibitor to advance to subsequent rounds of chemistry to generate a lead compound. Importantly, our chemical matter is different from the traditional nucleoside analog-based approaches for targeting DNA polymerases.
Recent computational and modeling advances have led a diverse modeling community to experiment with atmospheric boundary layer (ABL) simulations at subkilometer horizontal scales. Accurately parameterizing turbulence at these scales is a complex problem. The modeling solutions proposed to date are still in the development phase and remain largely unvalidated. This work assesses the performance of methods currently available in the Weather Research and Forecasting (WRF) model to represent ABL turbulence at a gray-zone grid spacing of 333 m. We consider three one-dimensional boundary layer parameterizations (MYNN, YSU and Shin-Hong) and coarse large-eddy simulations (LES). The reference dataset consists of five real-case simulations performed with WRF-LES nested down to 25 m. Results reveal that users should refrain from coarse LES and favor the scale-aware, Shin-Hong parameterization over traditional one-dimensional schemes. Overall, the spread in model performance is large for the cellular convection regime corresponding to the majority of our cases, with coarse LES overestimating turbulent energy across scales and YSU underestimating it and failing to reproduce its horizontal structure. Despite yielding the best results, the Shin-Hong scheme overestimates the effect of grid dependence on turbulent transport, highlighting the outstanding need for improved solutions to seamlessly parameterize turbulence across scales.
In recent years there have been major advances in the computation and use of high-order maps for the design, optimization and operation of beamlines. We will describe five practical examples for both linear and circular colliders. From least to most complex these examples will be: use of similarity transformations (FFTB design, SLC diagnosis); statistical maps (SSC smear and tune-shift); aberrations (SLC upgrade); resonance basis and nPB tracking (PEP-II design); and kick factorization (possibly LHC).
NETL's Simulation-Based Engineering User Center, or SBEUC, integrates one of the world's largest high-performance computers with an advanced visualization center. The SBEUC offers a collaborative environment among researchers at NETL sites and those working through the NETL-Regional University Alliance.
Significant challenges face reactor designers with regard to thermal hydraulic design and associated modeling for advanced reactor concepts. Computational thermal hydraulic codes solve only a piece of the core. There is a need for a whole core dynamics system code with local resolution to investigate and understand flow behavior with all the relevant physics and thermo-mechanics. The matched index of refraction (MIR) flow facility at Idaho National Laboratory (INL) has a unique capability to contribute to the development of validated computational fluid dynamics (CFD) codes through the use of state-of-the-art optical measurement techniques, such as Laser Doppler Velocimetry (LDV) and Particle Image Velocimetry (PIV). PIV is a non-intrusive velocity measurement technique that tracks flow by imaging the movement of small tracer particles within a fluid. At the heart of a PIV calculation is the cross correlation algorithm, which is used to estimate the displacement of particles in some small part of the image over the time span between two images. Generally, the displacement is indicated by the location of the largest peak. To quantify these measurements accurately, sophisticated processing algorithms correlate the locations of particles within the image to estimate the velocity (Ref. 1). Prior to use with reactor deign, the CFD codes have to be experimentally validated, which requires rigorous experimental measurements to produce high quality, multi-dimensional flow field data with error quantification methodologies. Computational thermal hydraulic codes solve only a piece of the core. There is a need for a whole core dynamics system code with local resolution to investigate and understand flow behavior with all the relevant physics and thermo-mechanics. Computational techniques with supporting test data may be needed to address the heat transfer from the fuel to the coolant during the transition from turbulent to laminar flow, including the possibility of an early laminarization of the flow (Refs. 2 and 3) (laminarization is caused when the coolant velocity is theoretically in the turbulent regime, but the heat transfer properties are indicative of the coolant velocity being in the laminar regime). Such studies are complicated enough that computational fluid dynamics (CFD) models may not converge to the same conclusion. Thus, experimentally scaled thermal hydraulic data with uncertainties should be developed to support modeling and simulation for verification and validation activities. The fluid/solid index of refraction matching technique allows optical access in and around geometries that would otherwise be impossible while the large test section of the INL system provides better spatial and temporal resolution than comparable facilities. Benchmark data for assessing computational fluid dynamics can be acquired for external flows, internal flows, and coupled internal/external flows for better understanding of physical phenomena of interest. The core objective of this study is to describe MIR and its capabilities, and mention current development areas for uncertainty quantification, mainly the uncertainty surface method and cross-correlation method. Using these methods, it is anticipated to establish a suitable approach to quantify PIV uncertainty for experiments performed in the MIR.