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At least 1,315 records · Page 73

INCREASING THE TRANSPARENCY AND REPRODUCIBILITY OF SPACE RADIATION SCIENCE: THE RADIATION BIOLOGY ONTOLOGY

Among the primary objectives of the Open/Open-Source Science paradigm are making scientific investigation data transparent and results reproducible [1], objectives shared by the FAIR principles [2]. To accomplish this, the conceptual framework that includes all the investigation objects needs to be accurately captured and communicated to all data consumers. A large part of this requires using metadata standards to annotate data collected. These standards should be readily accessible, informed by scientific community consensus and sufficiently specific to encompass all of the important aspects of the investigation. Starting in 2020 we have been co-leading an open consortium to develop a new metadata standard, the Radiation Biology Ontology (RBO), through the Open Biological and Biomedical Ontologies (OBO) Foundry [3]. We began by transforming many of the terms from the National Council on Radiation Protection and Measurement into concepts that can be formally related to existing OBO Foundry classes or attributes. We then identified and imported into the RBO existing OBO Foundry classes that have obvious relevance for radiation biomedicine (for example, concepts from the Environment Ontology that describe radiative processes, and concepts from the Gene Ontology dealing with molecular and cellular responses to radiation). Finally, we scrutinized datasets from investigations of radiation effects held in NASA GeneLab and LSDA repositories and added additional classes, instances, and attributes into the RBO that should be used to annotate these data. We developed the RBO using the open-source tools of GitHub and publish the RBO periodically through the NIH/NCBI BioPortal website, so systems worldwide can leverage the knowledge it contains [4]. This initial phase of concept modeling has yielded an RBO that at present has more than 300 declared concepts, with more than 3500 additional concepts imported from other OBO Foundry ontologies. While this first phase has focused on concepts for annotating samples, environments, exposures, and measurements, the next phase will center on supporting annotation of results and findings, such as concept models of molecular, cellular and tissue effects. The value of the RBO will be determined in part by our ability to engage the community in its development, and we have established a Radiobiology Informatics Consortium with unrestricted membership as the owner of the RBO in order to encourage investigators, system owners and other to join in this effort. Anyone can report issues or request new concept modeling or other features directly on GitHub. By using the BioPortal application programming interface, systems can pose dynamic queries to the latest version of the RBO for information on individual classes or entire hierarchies; this design eliminates the need for systems to be updated in order to use newer versions of the RBO. We hope to contribute to the advancement of open radiobiological science through the continued, open development of the RBO, that will provide more precise, machine-interpretable descriptions of investigations, as well as support data meta-analysis through machine learning or other artificial intelligence methods. REFERENCES [1] Open science in space. Nature Medicine, 2021. 27(9): p. 1485-1485. [2] Wilkinson, M.D., et al., The FAIR Guiding Principles for scientific data management and stewardship. Sci Data, 2016. 3: p. 160018. [3] Smith, B., et al., The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol, 2007. 25(11): p. 1251-5. [4] Whetzel, P.L., et al., BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res, 2011. 39(Web Server issue): p. W541-5.

informatics↗

Develop Advanced Nonlinear Signal Analysis Topographical Mapping System

During the development of the SSME, a hierarchy of advanced signal analysis techniques for mechanical signature analysis has been developed by NASA and AI Signal Research Inc. (ASRI) to improve the safety and reliability for Space Shuttle operations. These techniques can process and identify intelligent information hidden in a measured signal which is often unidentifiable using conventional signal analysis methods. Currently, due to the highly interactive processing requirements and the volume of dynamic data involved, detailed diagnostic analysis is being performed manually which requires immense man-hours with extensive human interface. To overcome this manual process, NASA implemented this program to develop an Advanced nonlinear signal Analysis Topographical Mapping System (ATMS) to provide automatic/unsupervised engine diagnostic capabilities. The ATMS will utilize a rule-based Clips expert system to supervise a hierarchy of diagnostic signature analysis techniques in the Advanced Signal Analysis Library (ASAL). ASAL will perform automatic signal processing, archiving, and anomaly detection/identification tasks in order to provide an intelligent and fully automated engine diagnostic capability. The ATMS has been successfully developed under this contract. In summary, the program objectives to design, develop, test and conduct performance evaluation for an automated engine diagnostic system have been successfully achieved. Software implementation of the entire ATMS system on MSFC's OISPS computer has been completed. The significance of the ATMS developed under this program is attributed to the fully automated coherence analysis capability for anomaly detection and identification which can greatly enhance the power and reliability of engine diagnostic evaluation. The results have demonstrated that ATMS can significantly save time and man-hours in performing engine test/flight data analysis and performance evaluation of large volumes of dynamic test data.

Jong, Jen-Yi↗

Benchmarking Autonomous Scattering Experiments Illustrated on TAS

With the advancement of artificial intelligence and machine learning methods, autonomous approaches are recognized to have great potential for performing more efficient scattering experiments. In our view, it is crucial for such approaches to provide thorough evidence about respective performance improvements in order to increase acceptance within a scientific community. Therefore, we propose a benchmarking procedure designed as a cost-benefit analysis that is applicable to any scattering method sequentially collecting data during an experiment. For a given approach, the performance assessment is based on how much benefit, given a certain cost budget, it is able to acquire in predefined test cases. Different approaches thus get a chance for comparison and can make their advantages explicit and visible. Key components of the procedure, i.e., cost measures, benefit measures, and test cases, are made precise for the setting of three-axes spectrometry (TAS) as an illustration. Finally, we discuss neglected aspects and possible extensions for the TAS setting and comment on the procedure’s applicability to other scattering methods. A Python implementation of the procedure to simplify its utilization by interested researchers from the field is also provided.

36 MATERIALS SCIENCE↗

Quantitative texture analysis at the WAND 2 and HIDRA diffractometers

Data collection and analysis strategies have been developed for efficient and reliable crystallographic texture measurements at two recently upgraded neutron diffractometers: the Wide Angle Neutron Diffractometer Squared (WAND 2 ) and the High Intensity Diffractometer for Residual Stress Analysis (HIDRA) at the High Flux Isotope Reactor located at Oak Ridge National Laboratory. These methods are demonstrated using measurements on a variety of textured samples, including multi-phase steel composites and polycrystalline calcite (CaCO 3 ). Reference measurements were also made at VULCAN, the engineering diffractometer located at the Spallation Neutron Source. The texture data obtained on the different instruments are in agreement, and WAND 2 is more time efficient than HIDRA. Two analysis methods were investigated, single-peak fitting to obtain individual pole figures for inversion and Rietveld texture analysis using MAUD. Here, the impact of the differences between the various textures obtained was evaluated through the calculation of diffraction elastic constants, which is one application of the texture data collected. Both instruments were found to provide texture data that are suitable for complementing other analyses, such as residual stress mapping.

47 OTHER INSTRUMENTATION↗

Evaluation of COTS Electronics by Power Spectrum Analysis and Multivariate Data Analysis

Power spectrum analysis (PSA) is a fast, non-destructive, sensitive method for examining commercial off-the-shelf ( COTS ) electronic components. These features make PSA attractive for both component screening and surveillance in support of component reliability efforts. Current analysis methods limit the utility of PSA due to the need to manually examine the results of analysis to identify anomalous parts. This study demonstrates the development and application of a workflow to automate the screening of COTS electronic components. Further, this study demonstrates the use of multivariate algorithms to assess aging of Zener diodes. These workflows can be readily extended to other components, combining the benefits of PSA and multivariate analysis to screen and evaluate COTS electronic components.

42 ENGINEERING↗

Ultrahigh performance LC/FT-MS non-targeted screening for biomass burning organic aerosol with MZmine2 and MFAssignR

In recent years, ultrahigh performance liquid chromatography Fourier transform mass spectrometry (LC/FT-MS) based non-targeted screening (NTS) methods have become increasingly popular for comprehensive analysis of complex organic mixtures. However, applying these methods for environmental complex mixture analysis is challenging due to the extreme complexity of natural samples and a lack of standard samples or surrogates for environmental complex mixtures. Furthermore, limited molecular markers in the databases and insufficient data processing software workflows make the application of these methods more challenging for environmental complex mixtures. In this work, we implement a new NTS data processing workflow to process data collected from ultrahigh performance liquid chromatography and Fourier transform Orbitrap Elite Mass Spectrometry (LC/FT-MS) by combining MZmine2 and MFAssignR, two opensource data processing tools and commercial Mesquite liquid smoke as a surrogate for biomass burning organic aerosol. MZmine2.53 data extraction followed MFAssignR molecular formula assignment offered noise free and highly accurate 1733 individual molecular formulas presented in liquid smoke with 4906 molecular species, including isomers. The results of this new approach were consistent with the results of direct infusion FT-MS analysis confirming its reliability. Over 90% of the molecular formulas presented in mesquite liquid smoke were matched with the molecular formulas of ambient biomass burning organic aerosol. This suggests the potential use of commercial liquid smoke as a surrogate for biomass burning organic aerosol research. Furthermore, the presented method significantly improves the identification of the molecular composition of biomass burning organic aerosol by successfully addressing some of the limitations related to the data analysis and giving a semi quantitative insight into the analysis.

54 ENVIRONMENTAL SCIENCES↗

Likelihood Methods for CMB Experiments

A great deal of experimental effort is currently being devoted to the precise measurements of the cosmic microwave background (CMB) sky in temperature and polarization. Satellites, balloon-borne, and ground-based experiments scrutinize the CMB sky at multiple scales, and therefore enable to investigate not only the evolution of the early Universe, but also its late-time physics with unprecedented accuracy. The pipeline leading from time ordered data as collected by the instrument to the final product is highly structured. Moreover, it has also to provide accurate estimates of statistical and systematic uncertainties connected to the specific experiment. In this paper, we review likelihood approaches targeted to the analysis of the CMB signal at different scales, and to the estimation of key cosmological parameters. We consider methods that analyze the data in the spatial (i.e., pixel-based) or harmonic domain. We highlight the most relevant aspects of each approach and compare their performance.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Apollo/Skylab suit program management systems study. Volume 2: Cost analysis

The business management methods employed in the performance of the Apollo-Skylab Suit Program are studied. The data accumulated over the span of the contract as well as the methods used to accumulate the data are examined. Management methods associated with the monitoring and control of resources applied towards the performance of the contract are also studied and recommended upon. The primary objective is the compilation, analysis, and presentation of historical cost performance criteria. Cost data are depicted for all phases of the Apollo-Skylab program in common, meaningful terms, whereby the data may be applicable to future suit program planning efforts.

Source record↗

Redshift data and statistical inference

Frequency histograms and the 'power spectrum analysis' (PSA) method, the latter developed by Yu & Peebles (1969), have been widely employed as techniques for establishing the existence of periodicities. We provide a formal analysis of these two classes of methods, including controlled numerical experiments, to better understand their proper use and application. In particular, we note that typical published applications of frequency histograms commonly employ far greater numbers of class intervals or bins than is advisable by statistical theory sometimes giving rise to the appearance of spurious patterns. The PSA method generates a sequence of random numbers from observational data which, it is claimed, is exponentially distributed with unit mean and variance, essentially independent of the distribution of the original data. We show that the derived random processes is nonstationary and produces a small but systematic bias in the usual estimate of the mean and variance. Although the derived variable may be reasonably described by an exponential distribution, the tail of the distribution is far removed from that of an exponential, thereby rendering statistical inference and confidence testing based on the tail of the distribution completely unreliable. Finally, we examine a number of astronomical examples wherein these methods have been used giving rise to widespread acceptance of statistically unconfirmed conclusions.

Newman, William I.↗

Test/semi-empirical analysis of a carbon/epoxy fabric stiffened panel

The purpose of this work-in-progress is to present a semi-empirical analysis method developed to predict the buckling and crippling loads of carbon/epoxy fabric blade stiffened panels in compression. This is a hand analysis method comprised of well known, accepted techniques, logical engineering judgements, and experimental data that results in conservative solutions. In order to verify this method, a stiffened panel was fabricated and tested. Both the best and analysis results are presented.

Spier, E. E.↗

The Relationship Between Two Methods for Estimating Uncertainties in Data Assimilation

This note examines the relationship between two apparently unrelated methods for estimating error statistics or uncertainties of relevance to data assimilation. The first method is due to (Desroziers et al., 2005, Q. J. R. Meteorol. Soc., 131, 3385–3396; referred to as DBCP hereafter) and relies on residual statistics readily available from data assimilation applications. The second method, the three- cornered hat (3CH) developed by Gray and Allan (1974, IEEE 28th Annual Symp. Freq. Control, 243–246), only recently applied to atmospheric sciences, uses three data sets and can derive estimates of relevant error uncertainties as well. The usefulness of both methods lies in them not requiring knowledge of the true value of the quantities at play. DBCP derives its results by relying explicitly on the constraints as- sociated with the data assimilation minimization problem; 3CH is general and its estimates hold as long as errors in the three data sets of choice are uncorrelated. Establishing the relationship between the methods requires applying the 3CH approach to the same observation, background, and analysis data sets used by DBCP. In this case, the same assumptions of DBCP on residual errors allow for cancellation of error cross–covariance terms in 3CH such that two of its corners derive identical estimates for observation and background error covariances as those of DBCP. The error cross–covariance terms associated with the third corner are shown to add up to twice the analysis error covariance so that the 3CH estimate for the third corner recovers the negative of the analysis error covariance. Illustrations of these findings are provided by deriving uncertainties for radio occultation bending angles.

Ricardo Todling↗

An empirical analysis of the quantitative effect of data when fitting quadratic and cubic polynomials

A study is made of the extent to which the size of the sample affects the accuracy of a quadratic or a cubic polynomial approximation of an experimentally observed quantity, and the trend with regard to improvement in the accuracy of the approximation as a function of sample size is established. The task is made possible through a simulated analysis carried out by the Monte Carlo method in which data are simulated by using several transcendental or algebraic functions as models. Contaminated data of varying amounts are fitted to either quadratic or cubic polynomials, and the behavior of the mean-squared error of the residual variance is determined as a function of sample size. Results indicate that the effect of the size of the sample is significant only for relatively small sizes and diminishes drastically for moderate and large amounts of experimental data.

Canavos, G. C.↗

The Heavy Rainfall Mechanism Revealed by a Terrain-Resolving 4DVar Data Assimilation System—A Case Study

In this study, a newly developed terrain-resolving four-dimensional variational (4DVar)-based data assimilation system, Immersed Boundary Method_Variational Doppler Radar Analysis System (IBM_VDRAS), is applied to investigate the mechanisms leading to a heavy precipitation event that occurred in Taiwan during the Southwesterly Monsoon Experiment (SoWMEX) conducted in 2008. The multivariate analyses using IBM_VDRAS and surface observations reveal that the warm and moist southwesterly flow from the ocean decelerates after making landfall, forming a surface convergence zone along the coast, which is further strengthened during the passage of a prefrontal rainband. The flow ascends as it advances inland until reaching the mountains, producing persistent precipitation and the enhancement of evaporative cooling as well as a widespread high pressure zone. A very shallow (<0.4 km) layer of offshore flow can be identified over the southwestern plain, which helps to generate a quasi-stationary convergence zone near the coast. Furthermore, sensitivity studies are carried out to quantify the relative importance of the contributions made by topographic blockage, evaporative cooling, and their nonlinear interaction, to the evolution of this type of convective system. The influence of the topography is identified as the dominant factor in modulating the flow structure of the rainfall system. However, it is the nonlinear interaction between terrain and evaporation that determines the distribution of the temperature and pressure fields.

54 ENVIRONMENTAL SCIENCES↗

Study to develop improved spacecraft snow survey methods using Skylab/EREP data

The author has identified the following significant results. The initial analysis of EREP data from the SL-2 mission has been undertaken. Snow distributions are being mapped from the S190A photography for three mountain areas: the Sierra Nevadas; the Cascades near Washington-Oregon border; and the Wasatch Range in Utah. In the S192 screening film, a dramatic reversal in the reflectance of the snow in the Wasatch Range is observed between the visible and near IR channels. In channel 2 (0.46 - 0.51 microns) the snow has a high reflectance, whereas in channel 11 (1.55 - 1.75 microns) the snow appears almost black, having a much lower reflectance than the surrounding terrain. The sharp drop in reflectance in the near IR channel is believed to be due to the existence of melt water on the snow surface. Although investigators have reported this effect previously using ERTS-1 imagery, the S192 data provides the first opportunity to study quantitatively the snow reflectance in several visible and near IR channels. The results will have direct application for developing a technique to determine the condition of the snow surface (i.e., dry of melting), a significant parameter in snow hydrology.

Barnes, J. C.↗

Systems and Methods for Advanced Rapid Imaging and Analysis for Earthquakes

Many embodiments provide a hybrid data processing system (HySDS) of an end-to-end geodetic imaging data system enabling near-real-time science, assessment, response, and rapid recovery. The HySDS may be an operation data processing system that integrates data from many different geodetic data sources and/or sensors, including interferometric synthetic aperture radar (InSAR), GPS, pixel tracking, seismology, and/or modeling, and processes the data to generate actionable high quality science data products. The HySDS may provide for an automated imaging and analysis capabilities that is able to handle the imminent increases in raw data from new and existing geodetic monitoring sensor systems.

Owen, Susan Ethel↗

Energy Dependence Analysis of Neutrino-Nucleus Interactions in Scintillator for MINERvA

This thesis is on the intrinsic energy dependence in neutrino-nucleus interaction models, especially quasielastic scattering and 2p2h process, and the implications for understanding data from MINERvA, NOvA, and DUNE. Neutrino-nucleus interactions are modeled using fve structure functions, W1, W2, W3, W4 and W5, and each structure function contributes diferently to the energy dependence once it enters the cross-section calculations. The energy independent term in the calculations contains only W2 and the next lower order term (of the order 1/E) contains W3 also. In this thesis, we show that W2 is good enough to describe MINERvA data and energy dependence coming from the cross-section directly is small. However, W3 will be signifcant for lower energy experiments such as NOvA and DUNE (especially at and below the oscillation maximum). We have also developed a method to extract structure functions directly from MINERvA data though we find that systematic uncertainties present in the data are too big to successfully determine 1/E Term. In addition to this, we have applied muon angle cuts on MINERvA data and MC, which have their own energy dependent effects. An apparent energy dependent discrepancy comes from known shortcomings especially in the pion production model. Finally, because the energy dependence analysis has similarities to the low-$\nu$ method, we have evaluated discrepancies between the data and MC in light of diferent fux constraint techniques. The results suggest including MINERvA s low-$\nu$ method constraint is an improvement.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

An R Shiny graphical user interface for analyzing, visualizing, and interpreting high precision mass spectrometric data

There is currently a lack of software that meets the needs for the analysis of raw data produced by modern isotope ratio mass spectrometers for both R&D and routine use at SRNL and other US national labs • Needs to accommodate multiple isotope systems, instruments, and manufacturers • Include modern statistical methods and handling/visualization of uncertainty • Flexible software with transparent (no “black box”) and reproducible methods • This project is inspired by existing discipline-specific data analysis software (e.g., Tripoli1 , ET_Redux2 , IsoplotR3) used in the geochemical community • Our goal is to build an open source data analysis software package that focuses on flexibility, transparency, and reproducibility

Labone, Elizabeth↗

An R shiny graphical user interface for highprecision mass spectrometric data analysis

• There is currently a lack of software that meets the needs for the analysis of raw data produced by modern isotope ratio mass spectrometers for both R&D and routine use at SRNL and other US national labs • Needs to accommodate multiple isotope systems, instruments, and manufacturers • Include modern statistical methods and handling/visualization of uncertainty • Flexible software with transparent (no “black box”) and reproducible methods • This project is inspired by existing discipline-specific data analysis software (e.g., Tripoli1 , ET_Redux2, IsoplotR3) used in the geochemical community • Our goal is to build an open source data analysis software package that focuses on flexibility, transparency, and reproducibility

LABONE, ELIZABETH↗