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At least 1,315 records · Page 73

Redundant disk arrays: Reliable, parallel secondary storage

During the past decade, advances in processor and memory technology have given rise to increases in computational performance that far outstrip increases in the performance of secondary storage technology. Coupled with emerging small-disk technology, disk arrays provide the cost, volume, and capacity of current disk subsystems, by leveraging parallelism, many times their performance. Unfortunately, arrays of small disks may have much higher failure rates than the single large disks they replace. Redundant arrays of inexpensive disks (RAID) use simple redundancy schemes to provide high data reliability. The data encoding, performance, and reliability of redundant disk arrays are investigated. Organizing redundant data into a disk array is treated as a coding problem. Among alternatives examined, codes as simple as parity are shown to effectively correct single, self-identifying disk failures.

Gibson, Garth Alan↗

Preliminary efforts toward development of data handling and analysis software for unsteady flow measurements: An application for aeroelastic transonic flow configurations

A few years ago the Structural Dynamics Division at LaRC started ambitious experimental research efforts known as the Benchmark Models Program. The primary objective of this program was to provide experimental data that may serve as a calibration source for computational fluid dynamics (CFD) efforts that deal with aeroelastic unsteady flow configurations. It also focuses on the understanding of complex flow phenomenon associated with unsteady flow developments. The overall plan for the program has been described by Bennett, including a presentation of initial test results of flutter of a rigid wing mounted on flexible supports. An example of a test model employed to measure the dynamic response along with corresponding pressure distributions is shown. This model incorporates eighty pressure transducers distributed along two spanwise stations. In addition, the models are equipped with four accelerometers and two strain gages. The data handling system for the Benchmark Model Program is under development. Several interactive computer routines designed for the user interface, dynamic memory allocation, unsteady flow measurements data extraction, and further data processing were developed. To present a few examples of measured data, the unsteady pressure distributions and the wing model dynamic response were plotted.

Finaish, Fathi↗

Robotic Assisted Microsurgery - RAMS FY'97

JPL and Microdexterity Systems collaborated to develop new surgical capabilities. They developed a Robot Assisted Microsurgery (RAM) tool for surgeons to use for operating on the eye, ear, brain, and blood vessels with unprecedented dexterity. A surgeon can hold the surgical instrument with motions of 6 degrees of freedom with an accuracy of 25 microns in a 70 cu cm workspace. In 1996 a demonstration was performed to remove a microscopic particle from a simulated eyeball. In 1997, tests were performed at UCLA to compare telerobotics with mechanical operations. In 5 out of 7 tests, the RAM tool performed with a significant improvement of preciseness over mechanical operation. New design features include: (1) amplified forced feedback; (2) simultaneous slave robot instrumentation; (3) index control switch on master handle; and (4) tool control switches. Upgrades include: (1) increase in computational power; and (2) installation of hard disk memory storage device for independent operation and independent operation of forceps. In 1997 a final demonstration was performed using 2 telerobotics simultaneously in a microsurgery suture procedure to close a slit in a thin sheet of latex rubber which extended the capabilities of microsurgery procedures. After completing trials and demonstrations for the FDA the potential benefits for thousands of operations will be exposed.

Source record↗

Method and apparatus for using compression to improve performance of low voltage caches

A method of operating a cache in a computing device includes, in response to receiving a memory access request at the cache, determining compressibility of data specified by the request, selecting in the cache a destination portion for storing the data based on the compressibility of the data and a persistent fault history of the destination portion, and storing a compressed copy of the data in a non-faulted subportion of the destination portion, wherein the persistent fault history indicates that the non-faulted subportion excludes any persistent faults.

Kalamatianos, John↗

Improving the Performance of DGEMM with MoA and Cache-Blocking: Preprint

The goal of this paper is to demonstrate performance enhancements of the high performance dense linear algebra matrix-matrix multiply DGEMM kernel, widely implemented by vendors in the basic linear algebra subroutine BLAS library. The mathematics of arrays (MoA) paradigm due to Mullin (1988) results in contiguous memory accesses in combination with Church-Rosser complete language constructs optimized for target processor architectures [3]. Our performance studies demonstrate that the MoA implementation of DGEMM combined with optimal cache-blocking strategies results in at least a 25% performance gain on both Intel Xeon Skylake and IBM Power-9 processors over the vendor supplied Intel MKL and IBM ESSL basic linear algebra libraries. Results are presented for the NREL Eagle and ORNL Summit supercomputers.

cache-blocking↗

Development of Segregated Thermal-Hydraulics Solvers in MOOSE

The simulation of fluid flows is an essential part of the design and analysis of nuclear systems. Algorithms able to simulate flows at different fidelity levels are available in the Multiphysics Object-Oriented Simulation Environment (MOOSE) and MOOSE-based applications such as Pronghorn \cite{novak2018pronghorn}, Pronghorn-Subchannel, RELAP-7, and SAM. Currently, significant effort is being invested in the development of coarse-mesh Computational Fluid Dynamics (CFD) capabilities within MOOSE and Pronghorn for the simulation of Generation IV nuclear reactors. Traditionally, the solution algorithms in MOOSE have relied on Newton or quasi-Newton methods (such as the preconditioned Jacobian-free Newton-Krylov method) where residuals and Jacobians (or approximations thereof) are constructed. Both Newton and quasi-Newton methods require the solution of a linear system at each nonlinear Newton iteration with the Jacobian as the system matrix. The Jacobian contains blocks originating from all variables in the problem (i.e., for thermal-hydraulics at least pressure, velocities, and temperature). Due to the formulation of the problem in a general multiphysics setting on unstructured mesh, creating a good preconditioner for the linear system can be challenging, thus many fluid applications have utilized direct solver-based methods such as LU factorization. However, with increasing system size and complexity in multi-dimensional problems, the direct solution of linear systems becomes computationally expensive both in execution time and and memory. For this reason, recent effort has focused on adapting segregated solution algorithms for CFD problems in MOOSE. These algorithms use fixed-point iteration between segregated systems whose assembly and preconditioning are easier those of the monolithic system. Initial results show that the segregated solution algorithm outperforms the monolithic approach in terms of memory usage and for large 3D problems in terms of CPU time as well.

42 ENGINEERING↗

Development of Segregated Thermal-Hydraulics Solvers in MOOSE

The simulation of fluid flows is an essential part of the design and analysis of nuclear systems. Algorithms able to simulate flows at different fidelity levels are available in the Multiphysics Object-Oriented Simulation Environment (MOOSE) and MOOSE-based applications such as Pronghorn \cite{novak2018pronghorn}, Pronghorn-Subchannel, RELAP-7, and SAM. Currently, significant effort is being invested in the development of coarse-mesh Computational Fluid Dynamics (CFD) capabilities within MOOSE and Pronghorn for the simulation of Generation IV nuclear reactors. Traditionally, the solution algorithms in MOOSE have relied on Newton or quasi-Newton methods (such as the preconditioned Jacobian-free Newton-Krylov method) where residuals and Jacobians (or approximations thereof) are constructed. Both Newton and quasi-Newton methods require the solution of a linear system at each nonlinear Newton iteration with the Jacobian as the system matrix. The Jacobian contains blocks originating from all variables in the problem (i.e., for thermal-hydraulics at least pressure, velocities, and temperature). Due to the formulation of the problem in a general multiphysics setting on unstructured mesh, creating a good preconditioner for the linear system can be challenging, thus many fluid applications have utilized direct solver-based methods such as LU factorization. However, with increasing system size and complexity in multi-dimensional problems, the direct solution of linear systems becomes computationally expensive both in execution time and and memory. For this reason, recent effort has focused on adapting segregated solution algorithms for CFD problems in MOOSE. These algorithms use fixed-point iteration between segregated systems whose assembly and preconditioning are easier those of the monolithic system. Initial results show that the segregated solution algorithm outperforms the monolithic approach in terms of memory usage and for large 3D problems in terms of CPU time as well.

42 ENGINEERING↗

Spacecraft computer resource margin management

The conduction of the Project Galileo Orbiter, with 18 microcomputers and the equivalent of 360K 8-bit bytes of memory contained within two major engineering subsystems and eight science instruments, requires that the key onboard computer system resources be managed in a very rigorous manner. Attention is given to the rationale behind the project policy, the development stage, the preliminary design stage, the design/implementation stage, and the optimization or 'scrubbing' stage. The implementation of the policy is discussed, taking into account the development of the Attitude and Articulation Control Subsystem (AACS) and the Command and Data Subsystem (CDS), the reporting of margin status, and the response to allocation oversubscription.

Larman, B. T.↗

The Remote Analysis Station (RAS) as an instructional system

"Hands-on" training in LANDSAT data analysis techniques can be obtained using a desk-top, interactive remote analysis station (RAS) which consists of a color CRT imagery display, with alphanumeric overwrite and keyboard, as well as a cursor controller and modem. This portable station can communicate via modem and dial-up telephone with a host computer at 1200 baud or it can be hardwired to a host computer at 9600 baud. A Z80 microcomputer controls the display refresh memory and remote station processing. LANDSAT data is displayed as three-band false-color imagery, one-band color-sliced imagery, or color-coded processed imagery. Although the display memory routinely operates at 256 x 256 picture elements, a display resolution of 128 x 128 can be selected to fill the display faster. In the false color mode the computer packs the data into one 8-bit character. When the host is not sending pictorial information the characters sent are in ordinary ASCII code. System capabilities are described.

Rogers, R. H.↗

Measurement-based performance evaluation technique for high-performance computers

A measurement-based performance evaluation technique has been used to characterize the OS performance of Cedar, a hierarchical shared-memory multiprocessor system. Thirteen OS performance meters were used to capture the operating system activities for compute-bound workloads. Three representative applications from the Perfect Benchmark Suite were used to measure the OS performance in a dedicated system and in multiprogrammed workloads. It was found that 13-23 percent of the total execution time on a dedicated system was spent in executing OS-related activities. Under multiprogramming, 12-14 percent of the total execution time was used by the OS. The impact of multiprogramming on the operating system performance meters was also measured.

Sharma, S.↗

A Cast of Thousands: How the IDEAS Productivity Project Has Advanced Software Productivity and Sustainability

Computational and data-enabled science and engineering are revolutionizing advances throughout science and society, at all scales of computing. For example, teams in the U.S. Department of Energy’s Exascale Computing Project have been tackling new frontiers in modeling, simulation, and analysis by exploiting unprecedented exascale computing capabilities—building an advanced software ecosystem that supports next-generation applications and addresses disruptive changes in computer architectures. However, concerns are growing about the productivity of the developers of scientific software. Members of the Interoperable Design of Extreme-scale Application Software project serve as catalysts to address these challenges through fostering software communities, incubating and curating methodologies and resources, and disseminating knowledge to advance developer productivity and software sustainability. This article discusses how these synergistic activities are advancing scientific discovery—mitigating technical risks by building a firmer foundation for reproducible, sustainable science at all scales of computing, from laptops to clusters to exascale and beyond.

97 MATHEMATICS AND COMPUTING↗

Frontier: Exploring Exascale

As the US Department of Energy (DOE) computing facilities began deploying petascale systems in 2008, DOE was already setting its sights on exascale. In that year, DARPA published a report on the feasibility of reaching exascale. The report authors identified several key challenges in the pursuit of exascale including power, memory, concurrency, and resiliency. That report informed the DOE's computing strategy for reaching exascale. With the deployment of Oak Ridge National Laboratory's Frontier supercomputer, we have officially entered the exascale era. In this paper, we discuss Frontier's architecture, how it addresses those challenges, and describe some early application results from Oak Ridge Leadership Computing Facility's Center of Excellence and the Exascale Computing Project.

Atchley, Scott {Leadership Computing}↗

NEAMS Milestone Report: M2MS–20OR030102 FW–CADIS PWR Ex-Core Analysis with Shift Through VERA

This report presents the work completed for the NEAMS milestone M2MS–20OR030102 titled "FW–CADIS PWR Ex-Core Analysis with Shift through VERA." The work completed for this milestone includes the implementation, integration, and optimization of memory and performance improvement methods in Shift for fully coupled ex-core calculations through Virtual Environment for Reactor Applications (VERA). Fully coupled in this context means the transfer of moderator boron concentration, pin-wise fission source, depleted compositions, temperatures, and moderator densities from MPACT (with COBRA-TF (CTF)) to Shift. The ability to run ex-core calculations with VERA has been enabled and used for several years by Consortium for Advanced Simulation of Light Water Reactors (CASL) partners. However, this implementation was limited and potentially computationally burdensome. This work has enabled the ability to run higher-fidelity ex-core calculations on moderate computing clusters by focusing on multithreading, domain decomposition, and Forward-Weighted CADIS (FW-CADIS) variance reduction. Tests performed on small cores, a small modular reactor (SMR), and CASL progression problems show very promising memory reduction and computational performance. Recommendations for settings when running fully coupled high-fidelity ex-core calculations with VERA are documented. Without these optimization methods, many processors on a compute node would be left unused for the entire ex-core calculation. Therefore, these methods enable the user to better use the resources available and reduce computation time.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

PETSc Users Manual (Revision 3.15)

This manual describes the use of the Portable, Extensible Toolkit for Scientific Computation (PETSc) for the numerical solution of partial differential equations and related problems on high-performance computers. PETSc is a suite of data structures and routines that provide the building blocks for the implementation of large-scale application codes on parallel (and serial) computers. PETSc uses the MPI standard for all distributed memory communication.

97 MATHEMATICS AND COMPUTING↗

MATAR: A performance portability and productivity implementation of data-oriented design with Kokkos

There is a need for simple, fast, and memory-efficient multidimensional data structures for dense and sparse storage that arise with numerical methods and in software applications. The data structures must perform equally well across multiple computer architectures, including CPUs and GPUs. For this purpose, we developed MATAR, a C++ software library that allows for simple creation and use of intricate data structures that is also portable across disparate architectures using Kokkos. Here, the performance aspect is achieved by forcing contiguous memory layout (or as close to contiguous as possible) for multidimensional and multi-size dense or sparse MATrix and ARray (hence, MATAR) types. Our results show that MATAR has the capability to improve memory utilization, performance, and programmer productivity in scientific computing. This is achieved by fitting more work into the available memory, minimizing memory loads required, and by loading memory in the most efficient order. This document describes the purpose of the work, the implementation of each of the data types, and the resulting performance both in some simple baseline test cases and in an application code.

97 MATHEMATICS AND COMPUTING↗

Selective consolidation of learning and memory via recall-gated plasticity

In a variety of species and behavioral contexts, learning and memory formation recruits two neural systems, with initial plasticity in one system being consolidated into the other over time. Moreover, consolidation is known to be selective; that is, some experiences are more likely to be consolidated into long-term memory than others. Here, we propose and analyze a model that captures common computational principles underlying such phenomena. The key component of this model is a mechanism by which a long-term learning and memory system prioritizes the storage of synaptic changes that are consistent with prior updates to the short-term system. This mechanism, which we refer to as recall-gated consolidation, has the effect of shielding long-term memory from spurious synaptic changes, enabling it to focus on reliable signals in the environment. We describe neural circuit implementations of this model for different types of learning problems, including supervised learning, reinforcement learning, and autoassociative memory storage. These implementations involve synaptic plasticity rules modulated by factors such as prediction accuracy, decision confidence, or familiarity. We then develop an analytical theory of the learning and memory performance of the model, in comparison to alternatives relying only on synapse-local consolidation mechanisms. We find that recall-gated consolidation provides significant advantages, substantially amplifying the signal-to-noise ratio with which memories can be stored in noisy environments. We show that recall-gated consolidation gives rise to a number of phenomena that are present in behavioral learning paradigms, including spaced learning effects, task-dependent rates of consolidation, and differing neural representations in short- and long-term pathways.

59 BASIC BIOLOGICAL SCIENCES↗

Selective consolidation of learning and memory via recall-gated plasticity

In a variety of species and behavioral contexts, learning and memory formation recruits two neural systems, with initial plasticity in one system being consolidated into the other over time. Moreover, consolidation is known to be selective; that is, some experiences are more likely to be consolidated into long-term memory than others. Here, we propose and analyze a model that captures common computational principles underlying such phenomena. The key component of this model is a mechanism by which a long-term learning and memory system prioritizes the storage of synaptic changes that are consistent with prior updates to the short-term system. This mechanism, which we refer to as recall-gated consolidation, has the effect of shielding long-term memory from spurious synaptic changes, enabling it to focus on reliable signals in the environment. We describe neural circuit implementations of this model for different types of learning problems, including supervised learning, reinforcement learning, and autoassociative memory storage. These implementations involve synaptic plasticity rules modulated by factors such as prediction accuracy, decision confidence, or familiarity. We then develop an analytical theory of the learning and memory performance of the model, in comparison to alternatives relying only on synapse-local consolidation mechanisms. We find that recall-gated consolidation provides significant advantages, substantially amplifying the signal-to-noise ratio with which memories can be stored in noisy environments. We show that recall-gated consolidation gives rise to a number of phenomena that are present in behavioral learning paradigms, including spaced learning effects, task-dependent rates of consolidation, and differing neural representations in short- and long-term pathways.

Lindsey, Jack W. (ORCID:0000000309307327)↗