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At least 1,315 records · Page 73

Modeling of diatomic molecule using the Morse potential and the Verlet algorithm

Performing molecular modeling usually uses special software for Molecular Dynamics (MD) such as: GROMACS, NAMD, JMOL etc. Molecular dynamics is a computational method to calculate the time dependent behavior of a molecular system. In this work, MATLAB was used as numerical method for a simple modeling of some diatomic molecules: HCl, H{sub 2} and O{sub 2}. MATLAB is a matrix based numerical software, in order to do numerical analysis, all the functions and equations describing properties of atoms and molecules must be developed manually in MATLAB. In this work, a Morse potential was generated to describe the bond interaction between the two atoms. In order to analyze the simultaneous motion of molecules, the Verlet Algorithm derived from Newton’s Equations of Motion (classical mechanics) was operated. Both the Morse potential and the Verlet algorithm were integrated using MATLAB to derive physical properties and the trajectory of the molecules. The data computed by MATLAB is always in the form of a matrix. To visualize it, Visualized Molecular Dynamics (VMD) was performed. Such method is useful for development and testing some types of interaction on a molecular scale. Besides, this can be very helpful for describing some basic principles of molecular interaction for educational purposes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The free energy of the metastable supersaturated vapor via restricted ensemble simulations. III. An extension to the Corti and Debenedetti subcell constraint algorithm

In order to improve the sampling of restricted microstates in our previous work [C. Nie, J. Geng, and W. H. Marlow, J. Chem. Phys. 127, 154505 (2007); 128, 234310 (2008)] and quantitatively predict thermal properties of supersaturated vapors, an extension is made to the Corti and Debenedetti subcell constraint algorithm [D. S. Corti and P. Debenedetti, Chem. Eng. Sci. 49, 2717 (1994)], which restricts the maximum allowed local density at any point in a simulation box. The maximum allowed local density at a point in a simulation box is defined by the maximum number of particles N{sub m} allowed to appear inside a sphere of radius R, with this point as the center of the sphere. Both N{sub m} and R serve as extra thermodynamic variables for maintaining a certain degree of spatial homogeneity in a supersaturated system. In a restricted canonical ensemble, at a given temperature and an overall density, series of local minima on the Helmholtz free energy surface F(N{sub m}, R) are found subject to different (N{sub m}, R) pairs. The true equilibrium metastable state is identified through the analysis of the formation free energies of Stillinger clusters of various sizes obtained from these restricted states. The simulation results of a supersaturated Lennard-Jones vapor at reduced temperature 0.7 including the vapor pressure isotherm, formation free energies of critical nuclei, and chemical potential differences are presented and analyzed. In addition, with slight modifications, the current algorithm can be applied to computing thermal properties of superheated liquids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Dynamics of fragments and associated phenomena in heavy-ion collisions using a modified secondary algorithm

We discuss the stability of fragments identified by secondary algorithms used to construct fragments within quantum molecular dynamics model. For this purpose we employ three different algorithms for fragment identification. 1) The conventional minimum spanning tree (MST) method based on the spatial correlations, 2) an improved version of MST with additional binding energy constraints of cold nuclear matter, 3) and that of hot matter. We find significant role of thermal binding energies over cold matter binding energies. Significant role is observed for fragment multiplicities and stopping of fragments. Whereas insignificant effect is observed on fragment’s flow.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Note: A pure-sampling quantum Monte Carlo algorithm with independent Metropolis

Recently, Ospadov and Rothstein published a pure-sampling quantum Monte Carlo algorithm (PSQMC) that features an auxiliary Path Z that connects the midpoints of the current and proposed Paths X and Y, respectively. When sufficiently long, Path Z provides statistical independence of Paths X and Y. Under those conditions, the Metropolis decision used in PSQMC is done without any approximation, i.e., not requiring microscopic reversibility and without having to introduce any G(x → x′; τ) factors into its decision function. This is a unique feature that contrasts with all competing reptation algorithms in the literature. An example illustrates that dependence of Paths X and Y has adverse consequences for pure sampling.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A machine learning photon detection algorithm for coherent x-ray ultrafast fluctuation analysis

X-ray free electron laser experiments have brought unique capabilities and opened new directions in research, such as creating new states of matter or directly measuring atomic motion. One such area is the ability to use finely spaced sets of coherent x-ray pulses to be compared after scattering from a dynamic system at different times. This enables the study of fluctuations in many-body quantum systems at the level of the ultrafast pulse durations, but this method has been limited to a select number of examples and required complex and advanced analytical tools. By applying a new methodology to this problem, we have made qualitative advances in three separate areas that will likely also find application to new fields. As compared to the “droplet-type” models, which typically are used to estimate the photon distributions on pixelated detectors to obtain the coherent x-ray speckle patterns, our algorithm achieves an order of magnitude speedup on CPU hardware and two orders of magnitude improvement on GPU hardware. We also find that it retains accuracy in low-contrast conditions, which is the typical regime for many experiments in structural dynamics. Finally, it can predict photon distributions in high average-intensity applications, a regime which up until now has not been accessible. Our artificial intelligence-assisted algorithm will enable a wider adoption of x-ray coherence spectroscopies, by both automating previously challenging analyses and enabling new experiments that were not otherwise feasible without the developments described in this work.

47 OTHER INSTRUMENTATION↗

Comparison of algorithms for determination of rotation measure and Faraday structure. I. 1100–1400 MHz

Faraday rotation measures (RMs) and more general Faraday structures are key parameters for studying cosmic magnetism and are also sensitive probes of faint ionized thermal gas. A definition of which derived quantities are required for various scientific studies is needed, as well as addressing the challenges in determining Faraday structures. A wide variety of algorithms has been proposed to reconstruct these structures. In preparation for the Polarization Sky Survey of the Universe's Magnetism (POSSUM) to be conducted with the Australian Square Kilometre Array Pathfinder and the ongoing Galactic Arecibo L-band Feeds Array Continuum Transit Survey (GALFACTS), we run a Faraday structure determination data challenge to benchmark the currently available algorithms, including Faraday synthesis (previously called RM synthesis in the literature), wavelet, compressive sampling, and QU-fitting. The input models include sources with one Faraday thin component, two Faraday thin components, and one Faraday thick component. The frequency set is similar to POSSUM/GALFACTS with a 300 MHz bandwidth from 1.1 to 1.4 GHz. We define three figures of merit motivated by the underlying science: (1) an average RM weighted by polarized intensity, RM{sub wtd}, (2) the separation Δϕ of two Faraday components, and (3) the reduced chi-squared χ{sub r}{sup 2}. Based on the current test data with a signal-to-noise ratio of about 32, we find the following. (1) When only one Faraday thin component is present, most methods perform as expected, with occasional failures where two components are incorrectly found. (2) For two Faraday thin components, QU-fitting routines perform the best, with errors close to the theoretical ones for RM{sub wtd} but with significantly higher errors for Δϕ. All other methods, including standard Faraday synthesis, frequently identify only one component when Δϕ is below or near the width of the Faraday point-spread function. (3) No methods as currently implemented work well for Faraday thick components due to the narrow bandwidth. (4) There exist combinations of two Faraday components that produce a large range of acceptable fits and hence large uncertainties in the derived single RMs; in these cases, different RMs lead to the same Q, U behavior, so no method can recover a unique input model. Further exploration of all these issues is required before upcoming surveys will be able to provide reliable results on Faraday structures.

79 ASTRONOMY AND ASTROPHYSICS↗

A RAY-TRACING ALGORITHM FOR SPINNING COMPACT OBJECT SPACETIMES WITH ARBITRARY QUADRUPOLE MOMENTS. I. QUASI-KERR BLACK HOLES

We describe a new numerical algorithm for ray tracing in the external spacetimes of spinning compact objects characterized by arbitrary quadrupole moments. Such spacetimes describe non-Kerr vacuum solutions that can be used to test the no-hair theorem in conjunction with observations of accreting black holes. They are also appropriate for neutron stars with spin frequencies in the {approx_equal} 300-600 Hz range, which are typical of the bursting sources in low-mass X-ray binaries. We use our algorithm to show that allowing for the quadrupole moment of the spacetime to take arbitrary values leads to observable effects in the profiles of relativistic broadened fluorescent iron lines from geometrically thin accretion disks.

79 ASTRONOMY AND ASTROPHYSICS↗

A RAY-TRACING ALGORITHM FOR SPINNING COMPACT OBJECT SPACETIMES WITH ARBITRARY QUADRUPOLE MOMENTS. II. NEUTRON STARS

A moderately spinning neutron star acquires an oblate shape and a spacetime with a significant quadrupole moment. These two properties affect its apparent surface area for an observer at infinity, as well as the light curve arising from a hot spot on its surface. In this paper, we develop a ray-tracing algorithm to calculate the apparent surface areas of moderately spinning neutron stars making use of the Hartle-Thorne metric. This analytic metric allows us to calculate various observables of the neutron star in a way that depends only on its macroscopic properties and not on the details of its equation of state. We use this algorithm to calculate the changes in the apparent surface area, which could play a role in measurements of neutron-star radii and, therefore, in constraining their equation of state. We show that whether a spinning neutron star appears larger or smaller than its non-rotating counterpart depends primarily on its equatorial radius. For neutron stars with radii {approx}10 km, the corrections to the Schwarzschild spacetime cause the apparent surface area to increase with spin frequency. In contrast, for neutron stars with radii {approx}15 km, the oblateness of the star dominates the spacetime corrections and causes the apparent surface area to decrease with increasing spin frequency. In all cases, the change in the apparent geometric surface area for the range of observed spin frequencies is {approx}<5% and hence only a small source of error in the measurement of neutron-star radii.

79 ASTRONOMY AND ASTROPHYSICS↗

THE HARPS-TERRA PROJECT. I. DESCRIPTION OF THE ALGORITHMS, PERFORMANCE, AND NEW MEASUREMENTS ON A FEW REMARKABLE STARS OBSERVED BY HARPS

Doppler spectroscopy has uncovered or confirmed all the known planets orbiting nearby stars. Two main techniques are used to obtain precision Doppler measurements at optical wavelengths. The first approach is the gas cell method, which consists of least-squares matching of the spectrum of iodine imprinted on the spectrum of the star. The second method relies on the construction of a stabilized spectrograph externally calibrated in wavelength. The most precise stabilized spectrometer in operation is the High Accuracy Radial velocity Planet Searcher (HARPS), operated by the European Southern Observatory in La Silla Observatory, Chile. The Doppler measurements obtained with HARPS are typically obtained using the cross-correlation function (CCF) technique. This technique consists of multiplying the stellar spectrum by a weighted binary mask and finding the minimum of the product as a function of the Doppler shift. It is known that CCF is suboptimal in exploiting the Doppler information in the stellar spectrum. Here we describe an algorithm to obtain precision radial velocity measurements using least-squares matching of each observed spectrum to a high signal-to-noise ratio template derived from the same observations. This algorithm is implemented in our software HARPS-TERRA (Template-Enhanced Radial velocity Re-analysis Application). New radial velocity measurements on a representative sample of stars observed by HARPS are used to illustrate the benefits of the proposed method. We show that, compared with CCF, template matching provides a significant improvement in accuracy, especially when applied to M dwarfs.

79 ASTRONOMY AND ASTROPHYSICS↗

Quadrature algorithms to the luminosity distance with a time-dependent dark energy model

In our previous work [1], we have proposed two methods for computing the luminosity distance d{sub L}{sup Λ} in ΛCDM model. In this paper, two effective quadrature algorithms, known as Romberg Integration and composite Gaussian Quadrature, are presented to calculate the luminosity distance d{sub L}{sup CPL} in the Chevallier-Polarski-Linder parametrization(CPL) model. By comparing both the efficiency and accuracy of the two algorithms, we find that the second is more promising. Moreover, we develop another strategy adapted for approximating d{sub L}{sup Λ} in flat ΛCDM universe. To some extent, our methods can make contributions to the recent numerical stimulation for the investigation of dark energy cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗

A new perspective on dark energy modeling via genetic algorithms

We use Genetic Algorithms to extract information from several cosmological probes, such as the type Ia supernovae (SnIa), the Baryon Acoustic Oscillations (BAO) and the growth rate of matter perturbations. This is done by implementing a model independent and bias-free reconstruction of the various scales and distances that characterize the data, like the luminosity d{sub L}(z) and the angular diameter distance d{sub A}(z) in the SnIa and BAO data, respectively, or the dependence with redshift of the matter density Ω{sub m}(a) in the growth rate data, fσ{sub 8}(z). These quantities can then be used to reconstruct the expansion history of the Universe, and the resulting Dark Energy (DE) equation of state w(z) in the context of FRW models, or the mass radial function Ω{sub M}(r) in LTB models. In this way, the reconstruction is completely independent of our prior bias. Furthermore, we use this method to test the Etherington relation, ie the well-known relation between the luminosity and the angular diameter distance, η≡d{sub L}(z)/(1+z){sup 2}d{sub A}(z), which is equal to 1 in metric theories of gravity. We find that the present data seem to suggest a 3-σ deviation from one at redshifts z ∼ 0.5. Finally, we present a novel way, within the Genetic Algorithm paradigm, to analytically estimate the errors on the reconstructed quantities by calculating a Path Integral over all possible functions that may contribute to the likelihood. We show that this can be done regardless of the data being correlated or uncorrelated with each other and we also explicitly demonstrate that our approach is in good agreement with other error estimation techniques like the Fisher Matrix approach and the Bootstrap Monte Carlo.

79 ASTRONOMY AND ASTROPHYSICS↗

Experimental demonstration of coupled multi-peak Bragg coherent diffraction imaging with genetic algorithms

Bragg coherent diffraction imaging has the potential to provide significant insight into the structure-properties relationship for crystalline materials by imaging, with nanoscale resolution, three-dimensional strain fields within individual grains and nanoparticles. The capability of present-day synchrotrons to locate and measure a multiplicity of Bragg reflections from a single grain makes it possible to recover the full strain tensor with nanometer resolution. Recent methods for coupling reconstructions from several peaks to determine the strain tensor have been developed and applied to synthetic data, but have not been applied to experimental data. Here, using a coupled genetic reconstruction algorithm, we reconstruct an experimental data set and demonstrate improvements in the ability to resolve vector-valued displacement fields internal to the particle as compared to what is achieved with a noncoupled approach. The coupled approach developed in this work was also validated on simulated data sets. In both simulated and experimental data, reconstructions from our coupled Bragg peak algorithm show improvements over the noncoupled independent reconstruction method of 5% in terms of accuracy and 53% in terms of consistency.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Quantum tensor network algorithms for evaluation of spectral functions on quantum computers

We investigate quantum algorithms derived from tensor networks to simulate the static and dynamic properties of quantum many-body systems. Using a sequentially prepared quantum circuit representation of a matrix product state (MPS) that we call a quantum tensor network (QTN), we demonstrate algorithms to prepare ground and excited states on a quantum computer and apply them to molecular nanomagnets (MNMs) as a paradigmatic example. In this setting, we develop two approaches for extracting the spectral correlation functions measured in neutron-scattering experiments: (a) a generalization of the SWAP test for computing wave function overlaps and, (b) a generalization of the notion of matrix product operators to the QTN setting which generates a linear combination of unitaries. The latter method is discussed in detail for translationally invariant spin-half systems, where it is shown to reduce the qubit resource requirements compared with the SWAP method and may be generalized to other systems. We demonstrate the versatility of our approaches by simulating spin-1/2 and spin-3/2 MNMs, with the latter being an experimentally relevant model of a Cr$^{3+}_{8}$ ring. Here, our approach has qubit requirements that are independent of the number of constituents of the many-body system and scale only logarithmically with the bond dimension of the MPS representation, making them appealing for implementation on near-term quantum hardware with mid-circuit measurement and reset.

Neutron scattering↗

Fully relativistic lattice Boltzmann algorithm

Starting from the Maxwell-Juettner equilibrium distribution, we develop a relativistic lattice Boltzmann (LB) algorithm capable of handling ultrarelativistic systems with flat, but expanding, spacetimes. The algorithm is validated through simulations of a quark-gluon plasma, yielding excellent agreement with hydrodynamic simulations. The present scheme opens the possibility of transferring the recognized computational advantages of lattice kinetic theory to the context of both weakly and ultrarelativistic systems.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Collective neutrino oscillations on a quantum computer with hybrid quantum-classical algorithm

We simulate the time evolution of collective neutrino oscillations in two-flavor settings on a quantum computer. We explore the generalization of Trotter-Suzuki approximation to time-dependent Hamiltonian dynamics. The trotterization steps are further optimized using the Cartan decomposition of two-qubit unitary gates U ϵ SU(4) in the minimum number of controlled-NOT (CNOT) gates making the algorithm more resilient to the hardware noise. As a result, a more efficient hybrid quantum-classical algorithm is also explored to solve the problem on noisy intermediate-scale quantum devices.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Rodeo Algorithm for Quantum Computing

We present a stochastic quantum computing algorithm that can prepare any eigenvector of a quantum Hamiltonian within a selected energy interval $\ [E-\epsilon, E+\epsilon]$. In order to reduce the spectral weight of all other eigenvectors by a suppression factor δ, the required computational effort scales as $\ O[|\log \delta|/(p \epsilon)]$, where p s the squared overlap of the initial state with the target eigenvector. The method, which we call the rodeo algorithm, uses auxiliary qubits to control the time evolution of the Hamiltonian minus some tunable parameter E . In this manner, we converge to the target eigenvector with exponential accuracy in the number of measurements. In addition to preparing eigenvectors, the method can also compute the full spectrum of the Hamiltonian. We illustrate the performance with several examples. For energy eigenvalue determination with error $\epsilon$, the computational scaling is $\ O[(\log \epsilon)^2/(p \epsilon)]$. For eigenstate preparation, the computational scaling is $\ O(\log \Delta/p)$, where $\Delta$ is the magnitude of the orthogonal component of the residual vector. The speed for eigenstate preparation is exponentially faster than that for phase estimation or adiabatic evolution.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Evaluating a quantum-classical quantum Monte Carlo algorithm with Matchgate shadows

Solving the electronic structure problem of molecules and solids to high accuracy is a major challenge in quantum chemistry and condensed matter physics. The rapid emergence and development of quantum computers offer a promising route to systematically tackle this problem. Recent work by [Huggins et al ., Nature (London) 603 , 416 (2022)] proposed a hybrid quantum-classical quantum Monte Carlo (QC-QMC) algorithm using Clifford shadows to determine the ground state of a Fermionic Hamiltonian. This approach displayed inherent noise resilience and the potential for improved accuracy compared to its purely classical counterpart. Nevertheless, the use of Clifford shadows introduces an exponentially scaling postprocessing cost. In this work, we investigate an improved QC-QMC scheme utilizing the recently developed Matchgate shadows technique [Commun. Math. Phys. 404 , 629 (2023)], which removes the aforementioned exponential bottleneck. We observe from experiments on quantum hardware that the use of Matchgate shadows in QC-QMC is inherently noise robust. We show that this noise resilience has a more subtle origin than in the case of Clifford shadows. Nevertheless, we find that classical postprocessing, while asymptotically efficient, requires hours of runtime on thousands of classical CPUs for even the smallest chemical systems, presenting a major challenge to the scalability of the algorithm.

Monte Carlo methods↗

Chaotic roots of the modular multiplication dynamical system in Shor's algorithm

Shor's factoring algorithm, believed to provide an exponential speedup over classical computation, relies on finding the period of an exactly periodic quantum modular multiplication operator. This exact periodicity is the hallmark of an integrable system, which is paradoxical from the viewpoint of quantum chaos, given that the classical limit of the modular multiplication operator is a highly chaotic system that occupies the “maximally random” Bernoulli level of the classical ergodic hierarchy. In this work, we approach this apparent paradox from a quantum dynamical systems viewpoint, and consider whether signatures of ergodicity and chaos may indeed be encoded in such an “integrable” quantization of a chaotic system. We show that Shor's modular multiplication operator, in specific cases, can be written as a superposition of quantized 𝐴-baker's maps exhibiting more typical signatures of quantum chaos and ergodicity. This work suggests that the integrability of Shor's modular multiplication operator may stem from the interference of other “chaotic” quantizations of the same family of maps, and paves the way for deeper studies on the interplay of integrability, ergodicity, and chaos in and via quantum algorithms.

Dynamical systems↗