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At least 1,315 records · Page 73

Improved scaling law for the prediction of deuterium retention in beryllium co-deposits

Hydrogen isotope co-deposition with Be eroded from the first wall is expected to be the main fusion fuel retention mechanism in ITER. Since good fuel accounting is crucial for economic and safety reasons, reliable predictions of hydrogen isotope retention are needed. Furthermore, this study builds upon the well-established empirical De Temmerman scaling law that predicts D/Be ratios in co-deposited layers based on deposition temperature, deposition rate, and deuterium particle energy. Expanding the data used in the original development of the scaling law with an additional dataset obtained with more recent measurements using a different technique to the original De Temmerman approach, allows us to obtain new values for free parameters and improve the prediction capabilities of the new scaling law. In an effort to improve the model even further, scaling with D 2 background pressure was included and a new two-term model derived, describing D retention in low- and high-energy traps separately.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Design improvements to cables and connectors in the Majorana Demonstrator

The Majorana Demonstrator is an experiment constructed to search for neutrinoless double-beta decays in germanium-76 and to demonstrate the feasibility to deploy a ton-scale experiment in a phased and modular fashion. It consists of two modular arrays of natural and 76 Ge-enriched germanium p-type point contact detectors totaling 44.1 kg, located at the 4850 level of the Sanford Underground Research Facility in Lead, South Dakota, USA. The Demonstrator uses custom high voltage cables to bias the detectors, as well as custom signal cables and connectors to read out the charge deposited at the point contact of each detector. These low-mass cables and connectors must meet stringent radio purity requirements while being subjected to thermal and mechanical stress. A number of issues have been identified with the currently installed cables and connectors. An improved set of cables and connectors for the Majorana Demonstrator are being developed with the aim of increasing their overall reliability and connectivity. In conclusion, we will discuss some of the issues encountered with the current cables and connectors as well as our improved designs and their initial performance.

42 ENGINEERING↗

DCTRGAN: improving the precision of generative models with reweighting

Significant advances in deep learning have led to more widely used and precise neural network-based generative models such as Generative Adversarial Networks (Gans). We introduce a post-hoc correction to deep generative models to further improve their fidelity, based on the Deep neural networks using the Classification for Tuning and Reweighting (Dctr) protocol. The correction takes the form of a reweighting function that can be applied to generated examples when making predictions from the simulation. We illustrate this approach using Gans trained on standard multimodal probability densities as well as calorimeter simulations from high energy physics. We show that the weighted Gan examples significantly improve the accuracy of the generated samples without a large loss in statistical power. This approach could be applied to any generative model and is a promising refinement method for high energy physics applications and beyond.

47 OTHER INSTRUMENTATION↗

Reconsidering tympanal-acoustic interactions leads to an improved model of auditory acuity in a parasitoid fly

Although most binaural organisms locate sound sources using neurological structures to amplify the sounds they hear, some animals use mechanically coupled hearing organs instead. One of these animals, the parasitoid fly Ormia ochracea (O. ochracea), has astoundingly accurate sound localization abilities. It can locate objects in the azimuthal plane with a precision of 2°, equal to that of humans, despite an intertympanal distance of only 0.5 mm, which is less than 1/100th of the wavelength of the sound emitted by the crickets that it parasitizes. O. ochracea accomplishes this feat via mechanically coupled tympana that interact with incoming acoustic pressure waves to amplify differences in the signals received at the two ears. In 1995, Miles et al developed a model of hearing mechanics in O. ochracea that represents the tympana as flat, front-facing prosternal membranes, though they lie on a convex surface at an angle from the flies' frontal and transverse planes. The model works well for incoming sound angles less than ±30° but suffers from reduced accuracy (up to 60% error) at higher angles compared to response data acquired from O. ochracea specimens. Despite this limitation, it has been the basis for bio-inspired microphone designs for decades. Here, we present critical improvements to this classic hearing model based on information from three-dimensional reconstructions of O. ochracea's tympanal organ. We identified the orientation of the tympana with respect to a frontal plane and the azimuthal angle segment between the tympana as morphological features essential to the flies' auditory acuity, and hypothesized a differentiated mechanical response to incoming sound on the ipsi- and contralateral sides that depend on these features. We incorporated spatially-varying model coefficients representing this asymmetric response, making a new quasi-two-dimensional (q2D) model. The q2D model has high accuracy (average errors of under 10%) for all incoming sound angles. This improved biomechanical model may inform the design of new microscale directional microphones and other small-scale acoustic sensor systems.

36 MATERIALS SCIENCE↗

Machine learning assisted hybrid models can improve streamflow simulation in diverse catchments across the conterminous US

Incomplete representations of physical processes often lead to structural errors in process-based (PB) hydrologic models. Machine learning (ML) algorithms can reduce streamflow modeling errors but do not enforce physical consistency. As a result, ML algorithms may be unreliable if used to provide future hydroclimate projections where climates and land use patterns are outside the range of training data. Here we test hybrid models built by integrating PB model outputs with a ML algorithm known as Long Short-Term Memory (LSTM) network on their ability to simulate streamflow in 531 catchments representing diverse conditions across the Conterminous United States. Model performance of hybrid models as measured by Nash-Sutcliffe efficiency (NSE) improved relative to standalone PB and LSTM models. More importantly, hybrid models provide highest improvement in catchments where PB models fail completely (i.e., NSE < 0). However, all models performed poorly in catchments with extended low flow periods, suggesting need for additional research.

54 ENVIRONMENTAL SCIENCES↗

Improving tropical cyclone rapid intensification forecasts with satellite measurements of sea surface salinity and calibrated machine learning

Forecasting rapid intensification (RI) of tropical cyclones (TC) is a mission known for large errors. One under-researched factor that affects TC intensification is salinity, which is important for density stratification in certain ocean regions and can affect the surface enthalpy flux under a strengthening hurricane. To investigate the impact and efficacy of using salinity information in state-of-the-art forecasting, we use a statistical model consisting of a variety of machine learning (ML) methods. For salinity data, we use satellite measurements of pre-storm sea surface salinity (SSS) as a proxy for the salinity stratification. We train and test the model on various ocean basins, including the Atlantic, eastern North Pacific and western North Pacific. A calibrator is trained on top of the ML models to correct and enhance probability forecasts. The calibrator significantly improves probability forecasts relative to recent works. The ML model performance is improved with the addition of SSS in the Eastern North Pacific, western North Pacific, and the Caribbean subregion of the North Atlantic, and the overall model performance is better than previous studies. SSS decreases model skill for a model trained on the full Atlantic basin. In the Indian Ocean, SSS is also notably correlated with RI occurrence, but the TC samples are not sufficient to train ML models.

hurricane↗

Crop diversification improves water-use efficiency and regional water sustainability

As global water scarcity intensifies, identifying agricultural practices that enhance sustainable water management is critical. Temporal crop diversification-rotating multiple species over time-has been proposed to improve soil health and water retention based on field-scale experiments. However, widespread adoption remains limited on farms, in part due to unverified benefits at larger scales. Here, we assess the influence of crop diversification on agricultural water-use efficiency (WUE, ratio of gross primary productivity to evapotranspiration) along a spectrum of monoculture to complex species rotations in California. Leveraging new high-resolution remote sensing datasets, we show that crop diversification is a key driver of agricultural WUE, and increasing the number of species planted in the previous 6 years from two to four increases WUE by ∼20% after accounting for differences between crops. Our results provide spatially explicit, large-scale quantification of crop diversification’s improvements to WUE, with direct implications for climate adaptation. More broadly, our framework offers a tool to evaluate other sustainable practices and guide policy and farm-scale decision-making.

climate-resilient agriculture↗

Cold compressor performance and energy consumption improvements at Jefferson Lab’s Central Helium Liquefiers

Abstract Jefferson Lab operates two central helium liquefiers (CHLs) which both utilize full cold compression from the saturation pressure at operating temperature (approximately 2.1 K) to just over atmospheric pressure. The original plant, CHL1, was recently outfitted with a replacement subatmospheric cold box (SC1R) containing state-of-the-art cold compressor technology, while the newer plant, CHL2, uses an older cold compressor system. In both cases, the heat of compression is absorbed at low temperature at the expense of electrical power consumed by the warm compressors. Due to the superior efficiency and turndown capabilities of SC1R, a new operating mode has been identified for CHL1 in which the required number of operating warm compressors is reduced by one. A cost-based method for optimizing cold compressor stability and efficiency has been developed and applied to CHL2, improving its turndown and lowering the warm compressor discharge pressure. As a result of these efforts, power consumption of the combined CHLs during normal operations has been reduced by nearly 10%, or a total of 650 kW. The observed performance of CHL1 with SC1R, as well as the cold compressor optimization method, leading to this improved energy consumption rate will be discussed in detail.

Mastracci, B [Thomas Jefferson National Accelerato↗

Network science can improve the sustainable development of solar energy

Abstract The recent emergence of agrivoltaic and ecovoltaic approaches to ground-mounted photovoltaic (PV) energy provides a much-needed alternative to the environmentally disruptive practices employed in utility-scale solar development. Research on such land-sharing approaches has grown rapidly, with an emphasis on characterizing how PV arrays impact ecosystem processes and agricultural productivity. Although these studies have done well to quantify a variety of dual-use solar practices by employing site-specific sampling designs, this approach has limited our ability to synthesize results across sites, regions, and globally. We call for a network science approach for improved cross-site synthesis of dual-use solar research. We contend that a common approach for data collection and synthesis will facilitate a more rigorous investigation of the agricultural and ecological impacts of PV development across space and over time. The products of this scientifically informed approach can be directly applied to improve sustainable land management.

Bacon, Taylor (ORCID:0009000518578569)↗

Increased seminal root number associated with domestication improves nitrogen and phosphorus acquisition in maize seedlings

Abstract Background and Aims Domesticated maize (Zea mays ssp. mays) generally forms between two and six seminal roots, while its wild ancestor, Mexican annual teosinte (Zea mays ssp. parviglumis), typically lacks seminal roots. Maize also produces larger seeds than teosinte, and it generally has higher growth rates as a seedling. Maize was originally domesticated in the tropical soils of southern Mexico, but it was later brought to the Mexican highlands before spreading to other parts of the continent, where it experienced different soil resource constraints. The aims of this study were to understand the impacts of increased seminal root number on seedling nitrogen and phosphorus acquisition and to model how differences in maize and teosinte phenotypes might have contributed to increased seminal root number in domesticated maize. Methods Seedling root system architectural models of a teosinte accession and a maize landrace were constructed by parameterizing the functional–structural plant model OpenSimRoot using plants grown in mesocosms. Seedling growth was simulated in a low-phosphorus environment, multiple low-nitrogen environments, and at variable planting densities. Models were also constructed to combine individual components of the maize and teosinte phenotypes. Key Results Seminal roots contributed ~35 % of the nitrogen and phosphorus acquired by maize landrace seedlings in the first 25 d after planting. Increased seminal root number improved plant nitrogen acquisition under low-nitrogen environments with varying precipitation patterns, fertilization rates, soil textures and planting densities. Models suggested that the optimal number of seminal roots for nutrient acquisition in teosinte is constrained by its limited seed carbohydrate reserves. Conclusions Seminal roots can improve the acquisition of both nitrogen and phosphorus in maize seedlings, and the increase in seed size associated with maize domestication may have facilitated increased seminal root number.

59 BASIC BIOLOGICAL SCIENCES↗

Natural variation and improved genome annotation of the emerging biofuel crop field pennycress ( Thlaspi arvense )

The Brassicaceae family comprises more than 3,700 species with a diversity of phenotypic characteristics, including seed oil content and composition. Recently, the global interest in Thlaspi arvense L. (pennycress) has grown as the seed oil composition makes it a suitable source for biodiesel and aviation fuel production. However, many wild traits of this species need to be domesticated to make pennycress ideal for cultivation. Molecular breeding and engineering efforts require the availability of an accurate genome sequence of the species. Here, we describe pennycress genome annotation improvements, using a combination of long- and short-read transcriptome data obtained from RNA derived from embryos of 22 accessions, in addition to public genome and gene expression information. Our analysis identified 27,213 protein-coding genes, as well as on average 6,188 biallelic SNPs. In addition, we used the identified SNPs to evaluate the population structure of our accessions. The data from this analysis support that the accession Ames 32872, originally from Armenia, is highly divergent from the other accessions, while the accessions originating from Canada and the United States cluster together. When we evaluated the likely signatures of natural selection from alternative SNPs, we found 7 candidate genes under likely recent positive selection. These genes are enriched with functions related to amino acid metabolism and lipid biosynthesis and highlight possible future targets for crop improvement efforts in pennycress.

59 BASIC BIOLOGICAL SCIENCES↗

SCOPe: improvements to the structural classification of proteins – extended database to facilitate variant interpretation and machine learning

Abstract The Structural Classification of Proteins—extended (SCOPe, https://scop.berkeley.edu) knowledgebase aims to provide an accurate, detailed, and comprehensive description of the structural and evolutionary relationships amongst the majority of proteins of known structure, along with resources for analyzing the protein structures and their sequences. Structures from the PDB are divided into domains and classified using a combination of manual curation and highly precise automated methods. In the current release of SCOPe, 2.08, we have developed search and display tools for analysis of genetic variants we mapped to structures classified in SCOPe. In order to improve the utility of SCOPe to automated methods such as deep learning classifiers that rely on multiple alignment of sequences of homologous proteins, we have introduced new machine-parseable annotations that indicate aberrant structures as well as domains that are distinguished by a smaller repeat unit. We also classified structures from 74 of the largest Pfam families not previously classified in SCOPe, and we improved our algorithm to remove N- and C-terminal cloning, expression and purification sequences from SCOPe domains. SCOPe 2.08-stable classifies 106 976 PDB entries (about 60% of PDB entries).

59 BASIC BIOLOGICAL SCIENCES↗

Strategies to identify and edit improvements in synthetic genome segments episomally

Genome engineering projects often utilize bacterial artificial chromosomes (BACs) to carry multi-kilobase DNA segments at low copy number. However, all stages of whole-genome engineering have the potential to impose mutations on the synthetic genome that can reduce or eliminate the fitness of the final strain. Here, we describe improvements to a multiplex automated genome engineering (MAGE) protocol to improve recombineering frequency and multiplexability. This protocol was applied to recoding an Escherichia coli strain to replace seven codons with synonymous alternatives genome wide. Ten 44 402–47 179 bp de novo synthesized DNA segments contained in a BAC from the recoded strain were unable to complement deletion of the corresponding 33–61 wild-type genes using a single antibiotic resistance marker. Next-generation sequencing (NGS) was used to identify 1–7 non-recoding mutations in essential genes per segment, and MAGE in turn proved a useful strategy to repair these mutations on the recoded segment contained in the BAC when both the recoded and wild-type copies of the mutated genes had to exist by necessity during the repair process. Finally, two web-based tools were used to predict the impact of a subset of non-recoding missense mutations on strain fitness using protein structure and function calls.

59 BASIC BIOLOGICAL SCIENCES↗

Improving neutrino-nuclei interaction models: Recommendations and case studies on Peelle’s Pertinent Puzzle

Improving the modeling of neutrino-nuclei interactions using data-driven methods is crucial for high-precision neutrino oscillation experiments. This paper investigates Peelle’s Pertinent Puzzle (PPP) in the context of neutrino measurements, a longstanding challenge to fitting theoretical models to experimental data. Inconsistencies in data-model comparisons hinder efforts to enhance the accuracy and reliability of model predictions. We analyze various sources contributing to these inconsistencies and propose strategies to address them, supported by practical case studies. We advocate for incorporating model fitting exercises as a standard practice in cross section publications to enhance the robustness of results. We use a common analysis framework to explore PPP-related challenges with MicroBooNE and T2K data in an unified manner. Our findings offer valuable insights for improving the accuracy and reliability of neutrino-nuclei interaction models, particularly by systematically tuning models using data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Improving missing transverse momentum estimation with a deep neural network

At hadron colliders, the net transverse momentum of particles that do not interact with the detector (missing transverse momentum, $^→_𝑝$$^{miss}_{T}$) is a crucial observable in many analyses. In the standard model, $^→_𝑝$$^{miss}_{T}$ originates from neutrinos. Many beyond-the-standard-model particles, such as dark matter candidates, are also expected to leave the experimental apparatus undetected. This paper presents a novel deep neural network based $^→_𝑝$$^{miss}_{T}$ estimator, DeepMET, developed by the CMS Collaboration at the LHC. The DeepMET algorithm produces a weight for each reconstructed particle based on its properties. The estimator is based on the negative vector sum of the weighted transverse momenta of all reconstructed particles in an event. Compared with other estimators currently employed by CMS, DeepMET improves the $^→_𝑝$$^{miss}_{T}$ resolution by 10%–30%, shows improvement for a wide range of final states, is easier to train, and is more resilient against the effects of additional proton-proton interactions accompanying the collision of interest.

artificial neural networks↗

Improved high-gradient performance for medium-velocity superconducting half-wave resonators: Surface preparation and trapped flux mitigation

A development effort to improve the performance of superconducting radio-frequency half-wave resonators (SRF HWRs) is underway at the Facility for Rare Isotope Beams (FRIB), where 220 such resonators are in operation. Our goal was to achieve an intrinsic quality factor (𝑄 0 ) of ≥ 2 × 10 10 at an accelerating gradient (𝐸 acc ) of 12 MV/m. FRIB production resonators were prepared with buffered chemical polishing. First trials of electropolishing (EP) and post-EP low-temperature baking of FRIB HWRs allowed us to reach higher gradient (15 MV/m, limited by quench) with a higher quality factor at high gradient, but 𝑄 0 was still below our goal. Trapped magnetic flux during the Dewar test was found to be a source of 𝑄 0 reduction. Three strategies were used to reduce the trapped flux: (i) adding a local magnetic shield (LMGS) to supplement the “global” magnetic shield around the Dewar for reduction of the ambient magnetic field; (ii) performing a “uniform cooldown” (UC) to reduce the thermoelectric currents; and (iii) using a compensation coil to further reduce the ambient field with active field cancellation (AFC). The LMGS improved the 𝑄 0 , but not enough to reach our goal. With UC and AFC, we exceeded our goal, reaching 𝑄 0 = 2.8 ×10 10 at 𝐸 acc = 12 MV/m.

Cryogenics & vacuum technology↗

Efficient frequency allocation for superconducting quantum processors using improved optimization techniques

Building on previous research on frequency allocation optimization for superconducting circuit quantum processors, this work incorporates several techniques to improve overall solution quality. Here, we introduce constraints and imposed edgewise differences help to improve the optimization results. We also introduce optimization variables for the orientation of each edge, defined as the direction from the control qubit to the target qubit, to be chosen during optimization. To scale up to larger processors, multimodule designs are employed with various boundary conditions, thereby enhancing the collective yield. These enhancements allow for greater flexibility in processor design by eliminating the need for handpicked orientations. We support the efficient assembly of large processors with dense connectivity by choosing the best boundary conditions. Examples demonstrate that, at low computational cost, this optimization approach finds a frequency configuration for a square chip with over 1000 qubits and over 10% yield at much larger dispersion levels than required by previous approaches.

Zhang, Zewen [Argonne National Laboratory (ANL), A↗

Charge lifetime improvement of the Continuous Electron Beam Accelerator Facility photogun with a biased anode

GaAs photocathodes in dc high-voltage photoguns are highly susceptible to ion back-bombardment, which reduces the photocathode quantum efficiency and limits the useful operating lifetime for producing polarized electron beams. This paper demonstrates that applying a small positive bias to the photogun anode can significantly suppress ion back-bombardment and increase charge lifetime. This technique was studied extensively using the Continuous Electron Beam Accelerator Facility photogun, where highly polarized electron beams created using a strained-superlattice GaAs / GaAsP photocathode were used and charge lifetimes improved by almost a factor of 2. A new simulation code was developed to model ion production and tracking in order to better understand and explain the factors that led to the performance improvement. Results of the experiments and simulations are discussed in detail. Published by the American Physical Society 2024

43 PARTICLE ACCELERATORS↗