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At least 1,315 records · Page 73

Anomalous Distributions of Primary Cosmic Rays as Evidence for Time-dependent Particle Acceleration in Supernova Remnants

Recent precise measurements of cosmic-ray (CR) spectra show that the energy distribution of protons is softer than those of heavier nuclei, and there are spectral hardenings for all nuclear compositions above ∼200 GV. Models proposed for these anomalies generally assume steady-state solutions of the particle acceleration process. We show that if the diffusion coefficient has a weak dependence on the particle rigidity near shock fronts of supernova remnants (SNRs), time-dependent solutions of the linear diffusive shock acceleration at two stages of SNR evolution can naturally account for these anomalies. The high-energy component of CRs is dominated by acceleration in the free expansion and adiabatic phases with enriched heavy elements and a high shock speed. The low-energy component may be attributed to acceleration by slow shocks propagating in dense molecular clouds with low metallicity in the radiative phase. Instead of a single power-law distribution, the spectra of time-dependent solutions soften gradually with the increase of energy, which may be responsible for the “knee” of CRs.

79 ASTRONOMY AND ASTROPHYSICS↗

Spirometric traits show quantile-dependent heritability, which may contribute to their gene-environment interactions with smoking and pollution

Background: “Quantile-dependent expressivity” refers to a genetic effect that is dependent upon whether the phenotype (e.g., spirometric data) is high or low relative to its population distribution. Forced vital capacity (FVC), forced expiratory volume in 1 second (FEV 1 ), and the FEV 1 /FVC ratio are moderately heritable spirometric traits. The aim of the analyses is to test whether their heritability (h 2 ) is constant over all quantiles of their distribution. Methods: Quantile regression was applied to the mean age, sex, height and smoking-adjusted spirometric data over multiple visits in 9,993 offspring-parent pairs and 1,930 sibships from the Framingham Heart Study to obtain robust estimates of offspring-parent (β OP ), offspring-midparent (β OM ), and full-sib regression slopes (β FS ). Nonparametric significance levels were obtained from 1,000 bootstrap samples. β OP s were used as simple indicators of quantile-specific heritability (i.e.,h 2 = 2β OP /(1+r spouse ), where r spouse was the correlation between spouses). Results: β OP ± standard error (SE) decreased by 0.0009 ± 0.0003 (P = 0.003) with every one-percent increment in the population distribution of FEV 1 /FVC, i.e., β OP ± SE were: 0.182 ± 0.031, 0.152 ± 0.015; 0.136 ± 0.011; 0.121 ± 0.013; and 0.099 ± 0.013 at the 10th, 25th, 50th, 75th, and 90th percentiles of the FEV 1 /FVC distribution, respectively. These correspond to h 2 ± SEs of 0.350 ± 0.060 at the 10th, 0.292 ± 0.029 at the 25th, 0.262 ± 0.020 at the 50th, 0.234 ± 0.025 at the 75th, and 0.191 ± 0.025 at the 90th percentiles of the FEV 1 /FVC ratio. Maximum mid-expiratory flow (MMEF) h 2 ± SEs increased 0.0025 ± 0.0007 (P = 0.0004) with every one-percent increment in its distribution, i.e.: 0.467 ± 0.046, 0.467 ± 0.033, 0.554 ± 0.038, 0.615 ± 0.042, and 0.675 ± 0.060 at the 10th, 25th, 50th, 75th, and 90th percentiles of its distribution. This was due to forced expiratory flow at 75% of FVC (FEF75%), whose quantile-specific h 2 increased an average of 0.0042 ± 0.0008 for every one-percent increment in its distribution. It is speculated that previously reported gene-environment interactions may be partially attributable to quantile-specific h 2 , i.e., greater heritability in individuals with lower FEV 1 /FVC due to smoking or airborne particles exposure vs. nonsmoking, unexposed individuals. Conclusion: Heritabilities of FEV 1 /FVC, MMEF, and FEF75% from quantile-regression of offspring-parent and sibling spirometric data suggest their quantile-dependent expressivity.

59 BASIC BIOLOGICAL SCIENCES↗

Shear stress stimulates phosphorylation of eNOS at Ser(635) by a protein kinase A-dependent mechanism

Shear stress stimulates nitric oxide (NO) production by phosphorylating endothelial NO synthase (eNOS) at Ser(1179) in a phosphoinositide-3-kinase (PI3K)- and protein kinase A (PKA)-dependent manner. The eNOS has additional potential phosphorylation sites, including Ser(116), Thr(497), and Ser(635). Here, we studied these potential phosphorylation sites in response to shear, vascular endothelial growth factor (VEGF), and 8-bromocAMP (8-BRcAMP) in bovine aortic endothelial cells (BAEC). All three stimuli induced phosphorylation of eNOS at Ser(635), which was consistently slower than that at Ser(1179). Thr(497) was rapidly dephosphorylated by 8-BRcAMP but not by shear and VEGF. None of the stimuli phosphorylated Ser(116). Whereas shear-stimulated Ser(635) phosphorylation was not affected by phosphoinositide-3-kinase inhibitors wortmannin and LY-294002, it was blocked by either treating the cells with a PKA inhibitor H89 or infecting them with a recombinant adenovirus-expressing PKA inhibitor. These results suggest that shear stress stimulates eNOS by two different mechanisms: 1) PKA- and PI3K-dependent and 2) PKA-dependent but PI3K-independent pathways. Phosphorylation of Ser(635) may play an important role in chronic regulation of eNOS in response to mechanical and humoral stimuli.

Non-NASA Center↗

Time-Dependent Stress Rupture Strength Degradation of Hi-Nicalon Fiber-Reinforced Silicon Carbide Composites at Intermediate Temperatures

The stress rupture strength of silicon carbide fiber-reinforced silicon carbide composites with a boron nitride fiber coating decreases with time within the intermediate temperature range of 700 to 950 degree Celsius. Various theories have been proposed to explain the cause of the time-dependent stress rupture strength. The objective of this paper is to investigate the relative significance of the various theories for the time-dependent strength of silicon carbide fiber-reinforced silicon carbide composites. This is achieved through the development of a numerically based progressive failure analysis routine and through the application of the routine to simulate the composite stress rupture tests. The progressive failure routine is a time-marching routine with an iterative loop between a probability of fiber survival equation and a force equilibrium equation within each time step. Failure of the composite is assumed to initiate near a matrix crack and the progression of fiber failures occurs by global load sharing. The probability of survival equation is derived from consideration of the strength of ceramic fibers with randomly occurring and slow growing flaws as well as the mechanical interaction between the fibers and matrix near a matrix crack. The force equilibrium equation follows from the global load sharing presumption. The results of progressive failure analyses of the composite tests suggest that the relationship between time and stress-rupture strength is attributed almost entirely to the slow flaw growth within the fibers. Although other mechanisms may be present, they appear to have only a minor influence on the observed time-dependent behavior.

Progressive Failure Analysis↗

On the Use of Material-Dependent Damping in ANSYS for Mode Superposition Transient Analysis

The mode superposition method is often used for dynamic analysis of complex structures, such as the seismic Category I structures in nuclear power plants, in place of the less efficient full method, which uses the full system matrices for calculation of the transient responses. In such applications, specification of material-dependent damping is usually desirable because complex structures can consist of multiple types of materials that may have different energy dissipation capabilities. A recent review of the ANSYS manual for several releases found that the use of material-dependent damping is not clearly explained for performing a mode superposition transient dynamic analysis. This paper includes several mode superposition transient dynamic analyses using different ways to specify damping in ANSYS, in order to determine how material-dependent damping can be specified conveniently in a mode superposition transient dynamic analysis.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

On the anisotropic advection-diffusion equation with time dependent coefficients

The advection-diffusion equation with time dependent velocity and anisotropic time dependent diffusion tensor is examined in regard to its non-classical transport features and to the use of a non-orthogonal coordinate system. Although this equation appears in diverse physical problems, particularly in particle transport in stochastic velocity fields and in underground porous media, a detailed analysis of its solutions is lacking. In order to study the effects of the time-dependent coefficients and the anisotropic diffusion on transport, we solve analytically the equation for an initial Dirac delta pulse. Here, we discuss the solutions to three cases: one based on power-law correlation functions where the pulse diffuses faster than the classical rate ~t, a second case specically designed to display slower rate of diffusion than the classical one, and a third case to describe hydrodynamic dispersion in porous media

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics

We propose a simple method to impose both no-slip boundary conditions at fluid-wall interfaces and at outflow boundaries in fully developed regions for Dissipative Particle Dynamics (DPD) fluid systems. The procedure to enforce the no-slip condition is based on a velocity-dependent shear force, which is a generalized force to represent the presence of the solid-wall particles and to maintain locally thermodynamic consistency. We show that this method can be implemented in both steady and time-dependent fluid systems and compare the DPD results with the continuum limit (Navier-Stokes) results. We also develop a force-adaptive method to impose the outflow boundary conditions for fully developed flow with unspecified outflow velocity profile or pressure value. We study flows over the backward-facing step and in idealized arterial bifurcations using a combination of the two new boundary methods with different flow rates. Finally, we explore the applicability of the outflow method in time-dependent flow systems. The outflow boundary method works well for systems with Womersley number of O(1), i.e. when the pressure and flowrate at the outflow are approximately in-phase.

97 MATHEMATICS AND COMPUTING↗

Surface harmonics method equations for solving the time-dependent neutron transport problems and their verification

Finite-difference time-dependent equations of Surface Harmonics method have been obtained for plane geometry. Verification of these equations has been carried out by calculations of tasks from 'Benchmark Problem Book ANL-7416'. The capacity and efficiency of the Surface Harmonics method have been demonstrated by solution of the time-dependent neutron transport equation in diffusion approximation. The results of studies showed that implementation of Surface Harmonics method for full-scale calculations will lead to a significant progress in the efficient solution of the time-dependent neutron transport problems in nuclear reactors. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Surface harmonics method for two-dimensional time-dependent neutron transport problems of square-lattice nuclear reactors

Time-dependent equations of the Surface Harmonics Method (SHM) have been derived from the time-dependent neutron transport equation with explicit representation of delayed neutrons for solving the two-dimensional time-dependent problems. These equations have been realized in the SUHAM-TD code. The TWIGL benchmark problem has been used for verification of the SUHAM-TD code. The results of the study showed that computational costs required to achieve necessary accuracy of the solution can be an order of magnitude less than with the use of the conventional finite difference method (FDM). (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Fourier Analysis of the Multilevel QD Method with {alpha}-Approximation For Time-Dependent Radiative Transfer Problems

Thermal radiation transfer (TRT) problems describe interaction of photon radiation with matter. They are defined by the time-dependent radiative transfer (RT) equation for the specific intensity I coupled with the energy balance (EB) equation. This class of problems is characterised by high dimensionality, multiple scales and strong nonlinearity. In this paper we analyze the multilevel quasi-diffusion (QD) method for solving TRT problems. This is a nonlinear method of moments with exact closures. The QD method enables one to reduce dimensionality of the original radiative transfer problem. It is formulated by a nonlinear system of equations consisting of (i) the high-order RT (HORT) equation for the intensity of photon radiation and (ii) low-order equations for the angular and energy moments of the intensity. The nonlinear closures are formulated by means of stable factors. The low-order problem brings the radiative transfer model to the level of multi-physics equations. The multilevel QD (MLQD) method possesses attractive features for efficient multi-physics coupling. To calculate the high-order RT solution we apply the {alpha}-approximation which assumes that the intensity changes exponentially in time over a time step. The {alpha}-approximation leads to the steady-state RT equation with a modified opacity and enables one to avoid storing the high-dimensional solution from the previous time step. The rate of change is evaluated by the solution of the time-dependent low-order QD (LOQD) equations for moments. We note that the HORT equation in the {alpha}-approximation contains an extra nonlinear term. It affects the iterative behaviour of the MLQD method. The obtained computational results indicated that the rate of convergence is slower compared to the rate when the time-dependent HORT is used to calculate the intensity. In this paper we perform an iterative stability analysis of the MLQD method in a discretized form and analyze convergence of outer (transport) iterations on a time step. We consider multigroup TRT problems in 1D slab geometry. The fully implicit scheme is used to discretize equations in time. The HORT equation is approximated with the method of step characteristics. A finite volume method is applied for spatial discretization of multigroup LOQD equations. The grey (one-group) LOQD equations are algebraically consistent with the multigroup LOQD equations. To perform Fourier analysis a model TRT problem in an infinite homogeneous medium is considered. The system of nonlinear equations of the MLQD method is linearized near an equilibrium solution at some given temperature. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Resolution‐dependent behavior of subgrid‐scale vertical transport in the Z hang‐ M c F arlane convection parameterization

Abstract To better understand the behavior of quasi‐equilibrium‐based convection parameterizations at higher resolution, we use a diagnostic framework to examine the resolution‐dependence of subgrid‐scale vertical transport of moist static energy as parameterized by the Zhang‐McFarlane convection parameterization (ZM). Grid‐scale input to ZM is supplied by coarsening output from cloud‐resolving model (CRM) simulations onto subdomains ranging in size from 8 × 8 to 256 × 256 km 2 . Then the ZM‐based parameterization of vertical transport of moist static energy for scales smaller than the subdomain size ( ) are compared to those directly calculated from the CRM simulations ( ) for different subdomain sizes. The ensemble mean decreases by more than half as the subdomain size decreases from 128 to 8 km across while decreases with subdomain size only for strong convection cases and increases for weaker cases. The resolution dependence of is determined by the positive‐definite grid‐scale tendency of convective available potential energy (CAPE) in the convective quasi‐equilibrium (QE) closure. Further analysis shows the actual grid‐scale tendency of CAPE (before taking the positive definite value) and behave very similarly as the subdomain size changes because they are both tied to grid‐scale advective tendencies. We can improve the resolution dependence of significantly by averaging the grid‐scale tendency of CAPE over an appropriately large area surrounding each subdomain before taking its positive definite value. Even though the ensemble mean decreases with increasing resolution, its variability increases dramatically. cannot capture such increase in the variability, suggesting the need for stochastic treatment of convection at relatively high spatial resolution (8 or 16 km).

54 ENVIRONMENTAL SCIENCES↗

Energy-dependent dynamics of keV to MeV electrons in the inner zone, outer zone, and slot regions

Here, we present observations of the radiation belts from the Helium Oxygen Proton Electron and Magnetic Electron Ion Spectrometer particle detectors on the Van Allen Probes satellites that illustrate the energy dependence and L shell dependence of radiation belt enhancements and decays. We survey events in 2013 and analyze an event on 1 March in more detail. The observations show the following: (a) at all L shells, lower energy electrons are enhanced more often than higher energies; (b) events that fill the slot region are more common at lower energies; (c) enhancements of electrons in the inner zone are more common at lower energies; and (d) even when events do not fully fill the slot region, enhancements at lower energies tend to extend to lower L shells than higher energies. During enhancement events the outer zone extends to lower L shells at lower energies while being confined to higher L shells at higher energies. The inner zone shows the opposite with an outer boundary at higher L shells for lower energies. Both boundaries are nearly straight in log(energy) versus L shell space. At energies below a few 100 keV, radiation belt electron penetration through the slot region into the inner zone is commonplace, but the number and frequency of “slot filling” events decreases with increasing energy. The inner zone is enhanced only at energies that penetrate through the slot. Energy- and L shell-dependent losses (that are consistent with whistler hiss interactions) return the belts to more quiescent conditions.

58 GEOSCIENCES↗

Modeling the influence of preferential flow on the spatial variability and time-dependence of mineral weathering rates

Inferences of weathering rates from laboratory and field observations suggest significant scale and time-dependence. Preferential flow induced by heterogeneity (manifest as permeability variations or discrete fractures) has been suggested as one potential mechanism causing scale/time-dependence. In this paper, we present a quantitative evaluation of the influence of preferential flow on weathering rates using reactive transport modeling. Simulations were performed in discrete fracture networks (DFNs) and correlated random permeability fields (CRPFs), and compared to simulations in homogeneous permeability fields. The simulations reveal spatial variability in the weathering rate, multidimensional distribution of reactions zones, and the formation of rough weathering interfaces and corestones due to preferential flow. In the homogeneous fields and CRPFs, the domain-averaged weathering rate is initially constant as long as the weathering front is contained within the domain, reflecting equilibrium-controlled behavior. The behavior in the CRPFs was influenced by macrodispersion, with more spread-out weathering profiles, an earlier departure from the initial constant rate and longer persistence of weathering. DFN simulations exhibited a sustained time-dependence resulting from the formation of diffusion-controlled weathering fronts in matrix blocks, which is consistent with the shrinking core mechanism. A significant decrease in the domain-averaged weathering rate is evident despite high remaining mineral volume fractions, but the decline does not follow a math formula dependence, characteristic of diffusion, due to network scale effects and advection-controlled behavior near the inflow boundary. Finally, the DFN simulations also reveal relatively constant horizontally averaged weathering rates over a significant depth range, challenging the very notion of a weathering front.

54 ENVIRONMENTAL SCIENCES↗

A study on the scale dependence of mixing indices for Eulerian multiphase models

Abstract Mixing can vary based on the scale at which the system is observed, and a mixing index that can capture the features at different length scales is desirable. In this article, we analyze the scale dependence of the mixing indices developed for Eulerian multiphase models. Relevant length scales are distinguished by filtering solid fraction fields. The scale‐dependence study is first done on manufactured fields of solid fraction to assess the performance of the mixing indices. The study is extended to a two‐dimensional CFD simulation of the segregation of a bidisperse gas–solid mixture. The local mixing index performs well in capturing the spatial variation of mixing at different scales. The scale dependence of two global mixing indices is considered in the study, where the state of mixing is defined based on statistical measures. We demonstrate that the choice of measures influences the sensitivity of mixing indices to mixing at different scales.

Nagawkar, Barlev R.↗

Hydrogen Evolution on Electrode‐Supported Pt n Clusters: Ensemble of Hydride States Governs the Size Dependent Reactivity

Abstract We report the size‐dependent activity and stability of supported Pt 1,4,7,8 for electrocatalytic hydrogen evolution reaction, and show that clusters outperform polycrystalline Pt in activity, with size‐dependent stability. To understand the size effects, we use DFT calculations to study the structural fluxionality under varying potentials. We show that the clusters can reshape under H coverage and populate an ensemble of states with diverse stoichiometry, structure, and thus reactivity. Both experiment and theory suggest that electrocatalytic species are hydridic states of the clusters (≈2 H/Pt). An ensemble‐based kinetic model reproduces the experimental activity trend and reveals the role of metastable states. The stability trend is rationalized by chemical bonding analysis. Our joint study demonstrates the potential‐ and adsorbate‐coverage‐dependent fluxionality of subnano clusters of different sizes and offers a systematic modeling strategy to tackle the complexities.

Zhang, Zisheng↗

Protein adsorption onto nanoparticles induces conformational changes: Particle size dependency, kinetics, and mechanisms

The use of nanomaterials in bioapplications demands a detailed understanding of protein–nanoparticle interactions. Proteins can undergo conformational changes while adsorbing onto nanoparticles, but studies on the impact of particle size on conformational changes are scarce. We have shown that conformational changes happening upon adsorption of myoglobin and BSA are dependent on the size of the nanoparticle they are adsorbing to. Out of eight initially investigated model proteins, two (BSA and myoglobin) showed conformational changes, and in both cases this conformational change was dependent on the size of the nanoparticle. Nanoparticle sizes ranged from 30 to 1000 nm and, in contrast to previous studies, we attempted to use a continuous progression of sizes in the range found in live viruses, which is an interesting size of nanoparticles for the potential use as drug delivery vehicles. Conformational changes were only visible for particles of 200 nm and bigger. Using an optimized circular dichroism protocol allowed us to follow this conformational change with regard to the nanoparticle size and, thanks to the excellent temporal resolution also in time. We uncovered significant differences between the unfolding kinetics of myoglobin and BSA. In this study, we also evaluated the plausibility of commonly used explanations for the phenomenon of nanoparticle size-dependent conformational change. Currently proposed mechanisms are mostly based on studies done with relatively small particles, and fall short in explaining the behavior seen in our studies.

Biotechnology & Applied Microbiology↗

Density Dependence in Three Snake River Sockeye Salmon Nursery Lakes in Central Idaho

Abstract Snake River Sockeye Salmon Oncorhynchus nerka, listed as an endangered species in 1991, currently inhabit three nursery lakes (Redfish, Pettit, and Alturas lakes) in the Sawtooth Valley, Idaho. Conspecific kokanee (lacustrine Sockeye Salmon) are also present in the lakes. Snake River Sockeye Salmon recovery efforts, initially focused on genetic conservation, are now attempting to rebuild naturally spawning populations using hatchery supplementation. However, in Sockeye Salmon nursery lakes, density dependence is frequently observed when elevated O. nerka abundance leads to declines in zooplankton biomass, body size, and shifts in community composition. In turn, these changes lead to reductions in juvenile O. nerka growth rates, survival, and adult returns. We examined a long-term data set of O. nerka population metrics and associated zooplankton community metrics. We found evidence of density dependence within and among nursery lakes. We detected differences in zooplankton biomass, lengths of preferred zooplankton prey (Daphnia spp. and cyclopoid copepods), parr growth rates, and age-1 smolt size among the three lakes. We found negative relationships between O. nerka density and zooplankton biomass and size. We identified positive relationships between zooplankton biomass and two response variables: smolt size at migration and growth rates of hatchery parr. The relationships were generally similar among lakes. Variable outcomes were a result of differences in O. nerka density (or zooplankton biomass), controlled primarily by the relative proportion of spawning and rearing habitat in each lake. Understanding unique lake habitats, ecological interactions, and the role of density dependence is germane to management of Snake River Sockeye Salmon populations.

Griswold, Robert G.↗

First‐Order Empirical Interpolation Method for Real‐Time Solution of Parametric Time‐Dependent Nonlinear PDEs

ABSTRACT We present a model reduction approach for the real‐time solution of time‐dependent nonlinear partial differential equations (PDEs) with parametric dependencies. A major challenge in constructing efficient and accurate reduced‐order models for nonlinear PDEs is the efficient treatment of nonlinear terms. We address this by unifying the implementation of hyperreduction methods to deal with nonlinear terms. Furthermore, we introduce a first‐order empirical interpolation method (EIM) to provide an efficient approximation of the nonlinear terms in time‐dependent PDEs. We demonstrate the effectiveness of our approach on the Allen–Cahn equation, which models phase separation, and the Buckley–Leverett equation, which describes two‐phase fluid flow in porous media. Numerical results highlight the accuracy, efficiency, and stability of the proposed method compared with both the Galerkin–Newton approach and hyper‐reduced models using the standard EIM.

Nguyen, Ngoc Cuong [Center for Computational Engin↗