Detection and quantification of copper in scrap metal by linac-based neutron activation analysis
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Sari, Adrien (ORCID:000000016164633X)↗
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Results for “Activity detect”
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Redox Dynamics of Active VO x Sites Promoted by TiO x during Oxidative Dehydrogenation of Ethanol Detected by Operando Quick XAS
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37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
A novel firefly luciferase biosensor enhances the detection of apoptosis induced by ESAT-6 family proteins of Mycobacterium tuberculosis
Highlights: • We developed a novel firefly luciferase based biosensor to detect apoptosis. • The novel biosensor 233-DnaE-DEVDG was reliable, sensitive and convenient. • 233-DnaE-DEVDG faithfully indicated ESAT-6 family proteins of Mycobacterium tuberculosis induced apoptosis. • EsxA, esxT and esxL in ESAT-6 family proteins induced apoptosis. • Activation of nuclear factor-κB (NF-κB) participated in esxT-induced apoptosis. - Abstract: The activation of caspase-3 is a key surrogate marker for detecting apoptosis. To quantitate caspase-3 activity, we constructed a biosensor comprising a recombinant firefly luciferase containing a caspase-3 cleavage site. When apoptosis was induced, caspase-3 cleavage of the biosensor activated firefly luciferase by a factor greater than 25. The assay conveniently detected apoptosis in real time, indicating that it will facilitate drug discovery. We screened ESAT-6 family proteins of Mycobacterium tuberculosis and found that esxA, esxT and esxL induced apoptosis. Further, activation of nuclear factor-κB (NF-κB) and the NF-κB-regulated genes encoding tumor necrosis factor-α (TNF-α) and tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) participated in esxT-induced apoptosis. We conclude that this assay is useful for high-throughput screening to identify and characterize proteins and drugs that regulate apoptosis.
60 APPLIED LIFE SCIENCES↗
Hydrogenation and C-S bond activation pathways in thiophene and tetrahydrothiophene reactions on sulfur-passivated surfaces of Ru, Pt, and Re nanoparticles
Thiophene-H2 reactions proceed via sulfur removal and hydrogenation routes on dispersed metal nanoparticles that become decorated by refractory S-adlayers during catalysis. The identity and kinetic relevance of the required elementary steps are described here based on rates measured at S-chemical potentials set by H2S/H2 ratios similar to those prevalent during practical catalysis on Re, ReSx, Ru, and Pt catalysts. Free energies for S adatom formation (from H2S decomposition and H2 evolution) are strongly exothermic (< -50 kJ mol-1 on Pt(111) and < -150 kJ mol-1 on Re and Ru(0001)), but strong repulsions between S adatoms cause adsorption free energies to increase significantly with coverage on all three surfaces, preventing complete monolayer formation. These adlayers, composed of unreactive S-atoms (S') that cover 1/3–2/3 ML leave residual interstitial spaces (*) that bind S-atoms (S*), intermediates, and transition states reversibly, as required for catalytic turnovers. The number and binding properties of these interstices depend on the identity and chemical state of the nanoparticle bulk phase, which influences S'-binding and coverages and cause large differences in direct desulfurization and hydrogenation turnover rates (per exposed metal atom) on dispersed Re, ReSx, Ru, and Pt. The identity and kinetic relevance of elementary steps for desulfurization (to C4¬ hydrocarbons) and hydrogenation (to tetrahydrothiophene; THT) are similar among these catalysts; they involve the kinetically-relevant formation of a thiophene-derived intermediate (monohydrothiophene on Re and ReSx; dihydrothiophene on Ru and Pt) that either cleaves its C-S bond or “over-hydrogenates” to THT in one surface sojourn. THT then undergoes C-S bond cleavage in secondary reactions that correct such over-hydrogenation to form the more unsaturated species that cleave C-S bonds. THT/C4 product ratios are insensitive to H2S/H2 ratios and thiophene pressure, even though active interstitial spaces are covered by kinetically-detectable coverages of S* and thiophene; therefore, primary and secondary reactions must involve the same active surfaces. The observed increase in THT/C4 ratios with H2 pressure shows that THT formation transition states involve a larger number of H-atoms than for C-S cleavage. The requirement for bound species with intermediate unsaturation (between THT and thiophene) for C-S bond cleavage is reminiscent of the H-shuttling required in C-C and C-O hydrogenolysis, reactions that involve the partial dehydrogenation of alkanes and alkanols, respectively, to weaken such bonds and to increase the formation entropy of the relevant transition states via the evolution of H2(g). These mechanistic details challenge prevalent paradigms about different site requirements for hydrogenation and desulfurization pathways and about how metal-sulfur bond energies act as descriptors of reactivity; in fact, such binding energies merely act to define the refractory S-adlayers that enable the formation of weakly-binding interstices that reversibly bind intermediates and transition states, thus allowing catalytic turnovers.
Yik, Edwin↗
A deep learning approach to anomaly detection in geological carbon sequestration sites using pressure measurements
Carbon capture and storage (CCS) has been extensively investigated as a potential engineering measure to reduce anthropogenic carbon emission to the atmosphere. Real-time monitoring of the safety and integrity of carbon storage reservoirs is a critical aspect of any commercial-scale CCS deployment. Pressure-based sensing is cost effective, suitable for real-time monitoring, and scalable to large monitoring networks. However, questions remain on how to best harness intelligent information from the high-frequency pressure monitoring sensors to support real-time decisions. Here this work presents a deep-learning-based framework for analyzing and detecting anomalies in pressure data streams by using a convolutional long short-term memory (ConvLSTM) neural network model, which allows for the fusion of both static and dynamic reservoir data. In ConvLSTM, the convolutional neural network (CNN) is used for spatial pattern mining and the LSTM is used for temporal pattern recognition. The performance of the ConvLSTM model for real-time anomaly detection is demonstrated using a set of pressure monitoring data collected from Cranfield, Mississippi, an active enhanced-oil-recovery field. The anomaly detection model is trained using bottom-hole pressure data acquired from the base experiment (without leak event) and then tested on pressure data collected during a series of controlled CO 2 release experiments (with artificially created leak events). Results show that the ConvLSTM neural network model successfully detected anomalies in the pressure time series obtained from the controlled release experiments. Inclusion of static information into the model further improves the robustness of ConvLSTM.
13 HYDRO ENERGY↗
Comparison of the lipid composition of oat root and coleoptile plasma membranes: lack of short-term change in response to auxin
The total lipid composition of plasma membranes (PM), isolated by the phase partitioning method from two different oat (Avena sativa L.) tissues, the root and coleoptile, was compared. In general, the PM lipid composition was not conserved between these two organs of the oat seedling. Oat roots contained 50 mole percent phospholipid, 25 mole percent glycolipid, and 25 mole percent free sterol, whereas comparable amounts in the coleoptile were 42, 39, and 19 mole percent, respectively. Individual lipid components within each lipid class also showed large variations between the two tissues. Maximum specific ATPase activity in the root PM was more than double the activity in the coleoptile. Treatment of coleoptile with auxin for 1 hour resulted in no detectable changes in PM lipids or extractable ATPase activity. Differences in the PM lipid composition between the two tissues that may define the limits of ATPase activity are discussed.
NASA Discipline Plant Biology↗
A universal method for sensitive and cell-free detection of CRISPR-associated nucleases
A multitude of biological applications for CRISPR-associated (Cas) nucleases have propelled the development of robust cell-based methods for quantitation of on- and off-target activities of these nucleases. However, emerging applications of these nucleases require cell-free methods that are simple, sensitive, cost effective, high throughput, multiplexable, and generalizable to all classes of Cas nucleases. Current methods for cell-free detection are cumbersome, expensive, or require sophisticated sequencing technologies, hindering their widespread application beyond the field of life sciences. Developing such cell-free assays is challenging for multiple reasons, including that Cas nucleases are single-turnover enzymes that must be present in large excess over their substrate and that different classes of Cas nucleases exhibit wildly different operating mechanisms. Here, we report the development of a cell-free method wherein Cas nuclease activity is amplified via an in vitro transcription reaction that produces a fluorescent RNA:small-molecule adduct. We demonstrate that our method is sensitive, detecting activity from low nanomolar concentrations of several families of Cas nucleases, and can be conducted in a high-throughput microplate fashion with a simple fluorescent-based readout. We provide a mathematical framework for quantifying the activities of these nucleases and demonstrate two applications of our method, namely the development of a logic circuit and the characterization of an anti-CRISPR protein. We anticipate our method will be valuable to those studying Cas nucleases and will allow the application of Cas nuclease beyond the field of life sciences.
60 APPLIED LIFE SCIENCES↗
Detection of mycobacterial small RNA in the bacterial culture supernatant and plasma of patients with active tuberculosis
Bacterial small RNA (sRNA) has been shown to play an important role in control of bacteria virulence, stress response and physiological metabolism by post-transcriptional regulation of gene expression. However, there were few reports about bacterial sRNA as a biomarker of infection. To test the potential role of sRNA in indicating infection of Mycobacterium tuberculosis, total RNA were extracted from the filtrated bacterial cultural supernatant. After synthesis of cDNA by reverse transcription, four Mycobacterial sRNAs including ASdes, ASpks, AS1726, and AS1890, which have been experimentally confirmed by Kristine B in the year of 2009, were detected by real time PCR. The specificity was verified by sequencing of the amplified products. Moreover, we demonstrate that the presence of sRNA Asdes in plasma of 55.56% (15/27) TB patients and 25.00% (6/24) normal controls with BCG vaccination (P < 0.05). Our results suggest that bacterial non-coding sRNA can be detected from either bacterial culture supernatants or patient's plasma. Detecting of Mycobacterial sRNA provides a rapid and relatively noninvasive approach for diagnosing disease and could be developed as a biomarker to identify patients with active tuberculosis to help make informed decisions about proper therapies.
60 APPLIED LIFE SCIENCES↗
$t_1$-Noise eliminated dipolar heteronuclear multiple-quantum coherence solid-state NMR spectroscopy
Heteronuclear correlation (HETCOR) spectroscopy is one of the key tools in the arsenal of the solid-state NMR spectroscopist to probe chemical and spatial proximities between two different nuclei and enhance spectral resolution. Dipolar heteronuclear multiple-quantum coherence (D-HMQC) is a powerful technique that can be potentially utilized to obtain 1 H detected 2D HETCOR solid-state NMR spectra of any NMR active nucleus. A long-standing problem in 1 H detected D-HMQC solid-state NMR experiments is the presence of t 1 -noise which reduces sensitivity and impedes spectral interpretation. In this contribution, we describe novel pulse sequences, termed t 1 -noise eliminated (TONE) D-HMQC, that minimize t 1 -noise and can provide higher sensitivity and resolution than conventional D-HMQC. Monte-Carlo and numerical simulations confirm that t 1 -noise in conventional D-HMQC primarily occurs because random MAS frequency fluctuations cause variations in the NMR signal amplitude from scan to scan, leading to imperfect cancellation of uncorrelated signals by phase cycling. The TONE D-HMQC sequence uses 1 H π-pulses to refocus the evolution of 1 H CSA across each SR4 2 1 recoupling block, improving the stability of the pulse sequence to random MAS frequency fluctuations. The 1 H refocusing pulses also restore the orthogonality of in-phase and anti-phase magnetization for all crystallite orientations at the end of each recoupling block, enabling the use of 90° flip-back or LG spin-lock trim pulses to reduce the intensity of uncorrelated signals. We demonstrate the application of these methods to acquire 1 H detected 2D 1 H{ 35 Cl} and 1 H{ 13 C} HETCOR spectra of histidine·HCl·H 2 O with reduced t 1 -noise. To show generality, we also apply these methods to obtain 2D 1 H{ 17 O} spectra of 20%- 17 O fmoc-alanine and for the first time at natural abundance, 2D 1 H{ 25 Mg} HETCOR spectra of magnesium hydroxide. The TONE D-HMQC sequences are also used to probe 1 H– 25 Mg and 1 H– 27 Al proximities in Mg–Al layered double hydroxides and confirm the even mixing of Mg and Al in these materials.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Monte Carlo simulations of photoneutron activation in a medical LINAC
The first step of the present study was to simulate the γ-radioactivity produced by photoneutrons in the treatment head of a decommissioned medical LINAC. These results, obtained with MCNPX and CINDER'90, are then compared with γ-ray spectrometric measurements of parts of the treatment head. Our ultimate objective is to simulate the associated production by photonuclear reactions of pure β-emitters, which are more difficult to access experimentally than the γ-ray emitters. (authors)
43 PARTICLE ACCELERATORS↗
Meteor Shower Forecast Improvements from a Survey of All-Sky Network Observations
Meteoroid impacts are capable of damaging spacecraft and potentially ending missions. In order to help spacecraft programs mitigate these risks, NASA's Meteoroid Environment Office (MEO) monitors and predicts meteoroid activity. Temporal variations in near-Earth space are described by the MEO's annual meteor shower forecast, which is based on both past shower activity and model predictions. The MEO and the University of Western Ontario operate sister networks of all-sky meteor cameras. These networks have been in operation for more than 7 years and have computed more than 20,000 meteor orbits. Using these data, we conduct a survey of meteor shower activity in the "fireball" size regime using DBSCAN. For each shower detected in our survey, we compute the date of peak activity and characterize the growth and decay of the shower's activity before and after the peak. These parameters are then incorporated into the annual forecast for an improved treatment of annual activity.
Moorhead, Althea V.↗
An Idea for an Active Seismic Experiment on Mars in 2008
The detection of liquid water is of prime interest and should have deep implications in the understanding of the Martian hydrological cycle and also in exobiology. In the frame of the 2007 joint CNES-NASA mission to Mars, a set of 4 NETLANDERS developed by an European consortium is expected to be launched in June 2007. We propose to use a second spacecraft going or landing to Mars to release near one of the Netlander a series of artificial metallic meteorites, in order to perform an active seismic experiment providing a seismic profile of the crust and subsurface.
Lognonne, Ph.↗
H2 line emission in three Seyfert nuclei: Evidence against UV-excitation
Line emission from vibrationally excited molecular hydrogen has been detected in a considerable number of active galactic nuclei (AGNs), including those generally believed to contain compact and luminous central engines (e.g., Seyfert nuclei) and those in which the luminosity is believed to arise from massive bursts of star formation (starburst nuclei). In most of these AGNs, only the bright 1-0 S(1) line (rest wavelength 2.12 microns) has been searched for and detected to date. Line-emitting H2 can be excited directly either by energetic collisions created by shock waves or by absorption of UV radiation. Each of these excitation mechanisms has been clearly identified in galactic and extragalactic regions. In active galactic nuclei strong sources of UV and (in some case) x rays are present. If the nuclear molecular matter is quiescent (i.e., isolated from the active nucleus and not set into motion by episodes of star formation) the H2 line emission will be dominated by fluorescence, or possibly by thermal emission due to heating by x rays (Krolik, this conference). However, it is expected or indeed observed that a significant fraction of the interstellar medium in and near these nuclei is undergoing rapid motions; either generated by the central engine or by a nuclear starburst, which are capable of producing strong shock phenomena in nearby molecular gas. Thus, a priori it is not obvious which mechanism is responsible for the H2 line emission from the nucleus of an active galaxy.
Geballe, T. R.↗
Electrochemical Detection of the Molecules of Life
All forms of life on Earth contain cellular machinery that can transform and regulate chemical energy through metabolic pathways. These processes are oxidation-reduction reactions that are performed by four key classes of molecules: flavins, nicotinamaides, porphyrins, and quinones. By detecting the electrochemical interaction of these redox-active molecules with an electrode, a method of differentiating them by their class could be established and incorporated into future life-detecting missions. This body of work investigates the electrochemistry of ubiquitous molecules found in life and how they may be detected. Molecules can oxidise or reduce the surface of an electrode - giving or receiving electrons - and these interactions are represented by changes in current with respect to an applied voltage. This relationship varies with: electrolyte type and concentration, working electrode material, the redox-active molecule itself, and scan rate. Flavin adenine dinucleotide (FAD), riboflavin, nicotinamide adenine dinucleotide (NADH), and anthraquinone are all molecules found intracellularly in almost all living organisms. An organism-synthesised extracellular redox-active molecule, Plumbagin, was also selected as part of this study. The goal of this work is to detect these molecules in seawater and assess its application in searching for life on Ocean Worlds.
astrobiolog↗
Preliminary Analysis of X-Band and Ka-Band Radar for Use in the Detection of Icing Conditions Aloft
NASA and the U.S. Army Cold Regions Research and Engineering Laboratory (CRREL) have an on-going activity to develop remote sensing technologies for the detection and measurement of icing conditions aloft. Radar has been identified as a strong tool for this work. However, since the remote detection of icing conditions with the intent to identify areas of icing hazard is a new and evolving capability, there are no set requirements for radar sensitivity. This work is an initial attempt to quantify, through analysis, the sensitivity requirements for an icing remote sensing radar. The primary radar of interest for cloud measurements is Ka-band, however, since NASA is currently using an X-band unit, this frequency is also examined. Several aspects of radar signal analysis were examined. Cloud reflectivity was calculated for several forms of cloud using two different techniques. The Air Force Geophysical Laboratory (AFGL) cloud models, with different drop spectra represented by a modified gamma distribution, were utilized to examine several categories of cloud formation. Also a fundamental methods approach was used to allow manipulation of the cloud droplet size spectra. And an analytical icing radar simulator was developed to examine the complete radar system response to a configurable multi-layer cloud environment. Also discussed is the NASA vertical pointing X-band radar. The radar and its data system are described, and several summer weather events are reviewed.
Reehorst, Andrew L.↗
The surface geometry of inherited joint and fracture trace patterns resulting from active and passive deformation
Hypothetical models are considered for detecting subsurface structure from the fracture or joint pattern, which may be influenced by the structure and propagated to the surface. Various patterns of an initially orthogonal fracture grid are modeled according to active and passive deformation mechanisms. In the active periclinal structure with a vertical axis, fracture frequency increased both over the dome and basin, and remained constant with decreasing depth to the structure. For passive periclinal features such as a reef or sand body, fracture frequency is determined by the arc of curvature and showed a reduction over the reefmound and increased over the basin.
Podwysocki, M. H.↗
Synthesis of new superheavy elements using the Dubna Gas-Filled Separator: The complex of technologies
All the new isotopes of superheavy elements in the reactions with {sup 48}Ca ions and actinide targets, synthesized at the Flerov Laboratory of Nuclear Reactions (FLNR), have been obtained at the Dubna Gas-Filled Recoil Separator (DGFRS). Success was achieved with the use of several techniques, algorithms and approaches with record performance in their area. The most sophisticated of them are rare event detection technology, methods of measuring the effective equilibrium charges of heavy ions and nuclei in hydrogen at low pressure, modified approaches to evaluation of probabilistic characteristics of detected multichain events, beam-free test methods of detection equipment, and some other ones. The author analyzes the approaches that have led ultimately to a real breakthrough and an advance in experiments on the synthesis of superheavy elements. The development of detection systems also attracts the authors’ attention. Contributions from some facilities—such as SHIP, TASCA, and GARIS (RIKEN)—to synthesis experiments are partially noted. Under consideration are methods of automation of similar experiments, including the development of control and shielding systems for operation with highly active actinide targets. Some techniques for detecting α decay of heavy nuclei that came before the current experiments with electromagnetic separators are reviewed briefly. The methods, algorithms and hardware presented cover a more than twenty-year period of commissioning and application in long-term experiments at FLNR DGFRS.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗