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At least 1,297 records · Page 72

The Generalized Green’s function Cluster Expansion: A Python package for simulating polarons

We present an efficient implementation of the Generalized Green’s function Cluster Expansion (GGCE), which is a new method for computing the ground-state properties and dynamics of polarons (single electrons coupled to lattice vibrations) in model electron-phonon systems. The GGCE works at arbitrary temperature and is well suited for a variety of electron-phonon couplings, including, but not limited to, site and bond Holstein and Peierls (Su-SchriefferHeeger) couplings, and couplings to multiple phonon modes with different energy scales and coupling strengths. Quick calculations can be performed efficiently on a laptop using solvers from NumPy and SciPy, or in parallel at scale using the PETSc sparse linear solver engine.

36 MATERIALS SCIENCE↗

Intermediate Principal Stress Effects on the 3D Cracking Behavior of Flawed Rocks Under True Triaxial Compression

Crack initiation, growth, and coalescence in flawed rocks have been extensively studied for 2D (planar, penetrating) flaws under uniaxial/biaxial compression. However, little is known as to the mechanisms and processes of cracking from 3D flaws under true triaxial compression, where the intermediate principal stress (σ 2 ) is distinguished from the major and minor principal stresses. In this work, we systematically investigate the effects of σ 2 on the 3D cracking behavior of rock specimens with preexisting flaws, through the use of mechanistic simulations of mixed-mode fracture in rocks. We explore how two characteristics of σ 2 , namely, (i) its orientation with respect to the flaw and (ii) its magnitude, affect two aspects of the cracking behavior, namely, (i) the cracking pattern and (ii) the peak stress. Results show that the orientation of σ 2 exerts more control over the cracking pattern than the flaw inclination angle. The peak stress becomes highest when σ 1 is parallel to the flaw, whereas it becomes lowest when σ 2 is parallel to the flaw. Also, the effects of σ 2 magnitude are more significant when σ 2 becomes more oblique to the flaw plane. On the basis of our observations, we propose mechanisms underlying the cracking behavior of 3D flawed rocks under true triaxial compression.

58 GEOSCIENCES↗

Skyrmion ratchet in funnel geometries

Here, using a particle-based model, we simulate the behavior of a skyrmion under the influence of asymmetric funnel geometries and ac driving at zero temperature. We specifically investigate possibilities for controlling the skyrmion motion by harnessing a ratchet effect. Our results show that as the amplitude of a unidirectional ac drive is increased, the skyrmion can be set into motion along either the easy or hard direction of the funnel depending on the ac driving direction. When the ac drive is parallel to the funnel axis, the skyrmion flows in the easy direction and its average velocity is quantized. In contrast, when the ac drive is perpendicular to the funnel axis, a Magnus-induced ratchet effect occurs, and the skyrmion moves along the hard direction with a constant average velocity. For biharmonic ac driving of equal amplitude along both the parallel and perpendicular directions, we observe a reentrant pinning phase where the skyrmion ratchet vanishes. For asymmetric biharmonic ac drives, the skyrmion exhibits a combination of effects and can move in either the easy or hard direction depending on the configuration of the ac drives. These results indicate that it is possible to achieve controlled skyrmion motion using funnel geometries, and we discuss ways in which this could be harnessed to perform data transfer operations.

36 MATERIALS SCIENCE↗

Performance Assessment of Photovoltaic Panels Using Impedance Spectroscopy

The goal of this project was to develop a technique for measuring internal characteristics of a PV module using light modulation under a fixed voltage bias while measuring the resulting alternating current. This technique, light-intensity modulated impedance spectroscopy (LIMIS), has the promise of detecting early signs of panel aging and degradation that could be used for example by solar farm operators to have early warnings to repair or replace panels to maintain reliability of the overall PV array. LIMIS would be complementary with the previously developed electrochemical impedance spectroscopy (EIS), which uses an alternating voltage applied electrically to a solar cell with a similar alternating current measurement. EIS has mostly been developed for individual PV cells rather than whole modules. The project was intended to assess what different information could be revealed by LIMIS, which may in some cases be more scalable to larger modules and potentially more practical to apply in field measurements without needing to electrically disconnect PV modules. We began with small 10 W PV modules and built a testbed capable of oscillating the light intensity with frequencies up to 50 kHz. In parallel, we built a large testbed for testing large 250 W PV modules. Meanwhile, we developed procedures for established measurement techniques: current–voltage (I–V), EIS, and electroluminescence (EL) imaging, where panels are subjected to forward bias while their infrared emission is recorded using a camera modified to be sensitive to IR wavelengths. In addition, we developed protocols for accelerated aging of PV modules in two ways. Thermal cycling from –40°C to +90°C simulates the diurnal temperature cycles on a rooftop. Mechanical stress by dropping a 227 g ball from a height of 1 m simulates damage such as that due to hail impacts.

14 SOLAR ENERGY↗

Contextual subspace variational quantum eigensolver calculation of the dissociation curve of molecular nitrogen on a superconducting quantum computer

Abstract We present an experimental demonstration of the Contextual Subspace Variational Quantum Eigensolver on superconducting hardware. Calculating the potential energy curve of molecular nitrogen proves challenging for many conventional quantum chemistry techniques, since static correlation dominates in the dissociation limit. Our quantum simulations retain good agreement with the Full Configuration Interaction energy, outperforming all benchmarked single-reference wavefunction techniques in capturing the bond-breaking appropriately. Moreover, our methodology is competitive with multiconfigurational approaches but at a saving of quantum resource, meaning larger active spaces can be treated for a fixed qubit allowance. To achieve this result, we deploy an error mitigation/suppression strategy comprised of Dynamical Decoupling, Measurement-Error Mitigation and Zero-Noise Extrapolation. Circuit parallelization also provides passive noise-averaging and improves the effective shot yield to reduce the measurement overhead. Furthermore, we introduce a modified adaptive ansatz construction algorithm that incorporates hardware awareness into our variational circuits, minimizing the transpilation cost for the target qubit topology.

Physics↗

Ion and Electron Acceleration in Fully Kinetic Plasma Turbulence

Turbulence is often invoked to explain the origin of nonthermal particles in space and astrophysical plasmas. By means of 3D fully kinetic particle-in-cell simulations, we demonstrate that turbulence in low-β plasmas (β is the ratio of plasma pressure to magnetic pressure) accelerates ions and electrons into a nonthermal energy distribution with a power-law energy range. The ion spectrum is harder than the electron one, and both distributions get steeper for higher β. We show that the energization of electrons is accompanied by a significant energy-dependent pitch-angle anisotropy, with most electrons moving parallel to the local magnetic field, while ions stay roughly isotropic. We demonstrate that particle injection from the thermal pool occurs in regions of high current density. Parallel electric fields associated with magnetic reconnection are responsible for the initial energy gain of electrons, whereas perpendicular electric fields control the overall energization of ions. Our findings have important implications for the origin of nonthermal particles in space and astrophysical plasmas.

79 ASTRONOMY AND ASTROPHYSICS↗

A parameterization of sub-grid topographical effects on solar radiation in the E3SM Land Model (version 1.0): implementation and evaluation over the Tibetan Plateau

Abstract. Topography exerts significant influences on the incoming solar radiation at the land surface. A few stand-alone regional and global atmospheric models have included parameterizations for sub-grid topographic effects on solar radiation. However, nearly all Earth system models (ESMs) that participated in the Coupled Model Intercomparison Project (CMIP6) use a plane-parallel (PP) radiative transfer scheme that assumes that the terrain is flat. In this study, we incorporated a well-validated sub-grid topographic (TOP) parameterization in the Energy Exascale Earth System Model (E3SM) Land Model (ELM) version 1.0 to quantify the effects of sub-grid topography on solar radiation flux, including the shadow effects and multi-scattering between adjacent terrain. We studied the role of sub-grid topography by performing ELM simulations with the PP and TOP schemes over the Tibetan Plateau (TP). Additional ELM simulations were performed at multiple spatial resolutions to investigate the role of spatial scale on sub-grid topographic effects on solar radiation. The Moderate Resolution Imaging Spectroradiometer (MODIS) data was used to compare with the ELM simulations. The results show that topography has non-negligible effects on surface energy budget, snow cover, snow depth, and surface temperature over the TP. The absolute differences in surface energy fluxes for net solar radiation, latent heat flux, and sensible heat flux between TOP and PP exceed 20, 10, and 5 W m−2, respectively. The differences in land surface albedo, snow cover fraction, snow depth, and surface temperature between TOP and PP exceed 0.1, 0.1, 10 cm, and 1 K, respectively. The magnitude of the sub-grid topographic effects is dependent on seasons and elevations and is also sensitive to the spatial scales. Although the sub-grid topographic effects on solar radiation are larger with more spatial details at finer spatial scales, they cannot be simply neglected at coarse spatial scales. When compared to MODIS data, incorporating the sub-grid topographic effects overall reduces the biases of ELM in simulating surface energy balance, snow cover, and surface temperature, especially in the high-elevation and snow-covered regions over the TP. The inclusion of sub-grid topographic effects on solar radiation parameterization in ELM will contribute to advancing our understanding of the role of the surface topography on terrestrial processes over complex terrain.

Hao, Dalei (ORCID:0000000334979774)↗

Learning plasma dynamics and robust rampdown trajectories with predict-first experiments at TCV

The rampdown phase of a tokamak pulse is difficult to simulate and often exacerbates multiple plasma instabilities. To reduce the risk of disrupting operations, we leverage advances in Scientific Machine Learning (SciML) to combine physics with data-driven models, developing a neural state-space model (NSSM) that predicts plasma dynamics during Tokamak à Configuration Variable (TCV) rampdowns. The NSSM efficiently learns dynamics from a modest dataset of 311 pulses with only five pulses in a reactor-relevant high-performance regime. The NSSM is parallelized across uncertainties, and reinforcement learning (RL) is applied to design trajectories that avoid instability limits. High-performance experiments at TCV show statistically significant improvements in relevant metrics. A predict-first experiment, increasing plasma current by 20% from baseline, demonstrates the NSSM’s ability to make small extrapolations. The developed approach paves the way for designing tokamak controls with robustness to considerable uncertainty and demonstrates the relevance of SciML for fusion experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Alignment of the magnetic field in star-forming regions and why it might be difficult to observe

ABSTRACT Magnetic fields are an important component of the interstellar medium (ISM) and exhibit strongly varying field strengths and a non-trivial correlation with the gas density. Its dynamical impact varies between individual regions of the ISM and correlates with the orientation of the field with respect to the gas structures. Using high-resolution magneto-hydrodynamical simulations of the ISM, we explore the connection between the orientation of the field and the dynamical state of the gas. We find that the onset of gravitational instability in molecular gas above a density of $\rho \sim 10^{-21}\, \mathrm{g\, cm}^{-3}$$(n\sim 400\, \mathrm{cm}^{-3})$ coincides with an alignment of the magnetic field lines and the gas flow. At this transition, the gradient of the density changes from mainly perpendicular to preferentially parallel to the field lines. A connection between the three-dimensional alignment and projected two-dimensional observables is non-trivial, because of a large dispersion of the magnetic field orientation along the line of sight. The turbulent correlation lengths can be small compared to the typical integration lengths. As a consequence, the small-scale signal of the orientation can sensitively depend on the line of sight or the dynamical state of the cloud can fluctuate stochastically or be completely averaged out. With higher spatial resolution more small-scale structures are resolved, which aggravates the link between magneto-hydrodynamical quantities and projected observables.

Girichidis, Philipp (ORCID:0000000293009914)↗

Determination of the argon spectral function from ( e , e ' p ) data

The E12-14-012 experiment, performed in Jefferson Lab Hall A, has measured the $(e, e'p)$ cross section in parallel kinematics using a natural argon target. Here, we report the full results of the analysis of the data set corresponding to beam energy 2.222 GeV, and spanning the missing momentum and missing energy range $15 \lesssim p_m \lesssim 300$ MeV/c and $12 \lesssim E_m \lesssim 80$ MeV. The reduced cross section, determined as a function of $p_m$ and $E_m$ with $\approx$4\% accuracy, has been fitted using the results of Monte Carlo simulations involving a model spectral function and including the effects of final state interactions. The overall agreement between data and simulations turns out to be quite satisfactory ($\chi^2$/n.d.o.f.=1.9). Furthermore, the resulting spectral function will provide valuable new information, needed for the interpretation of neutrino interactions in liquid argon detectors.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Experimental and Theoretical Evaluation of Feed Flow Collar Design for Shell Fed Hollow Fiber Membrane Modules

An experimental and theoretical study of module collar design is presented here. Hollow fiber membranes are prepared by dip coating a poly(vinylidene) (PVDF) support with a polydimethylsiloxane (PDMS) gutter layer and a Pebax 2533 selective layer. Fiber bundles with a well-defined fiber packing are prepared using a 3D printed module. A parallel fiber bundle consisting of 4-9 uniformly spaced fibers is created with printed tabs that align the fibers and create a tubesheet. The tabs are sealed within a printed case that possesses a series of external ports for gas introduction and removal. Uniquely, both port location and the use of a collar to assist fluid distribution in the shell can be varied for the same fiber bundle. Experimental measurements are compared to computational fluid dynamics (CFD) simulations. The experimental module design allows high-fidelity representation of the fiber bundle and module case in the simulations. Comparisons between experiment and simulation are in good agreement over a broad range of experimental conditions. The detrimental effect of having ports located too close, leading to stagnation regions, is captured as well as the beneficial effects of using a collar for shell-side fluid distribution around the fiber bundle. Such results help validate the use of CFD to develop high-performance module designs.

Tran, Thien↗

Differentiating Thermal Conductances at Semiconductor Nanocrystal/Ligand and Ligand/Solvent Interfaces in Colloidal Suspensions

Infrared-pump, electronic-probe (IPEP) spectroscopy is used to measure heat flow into and out of CdSe nanocrystals suspended in an organic solvent, where the surface ligands are initially excited with an infrared pump pulse. Subsequently, the heat is transferred from the excited ligands to the nanocrystals and in parallel to the solvent. Parallel heat transfer in opposite directions uniquely enables us to differentiate the thermal conductances at the nanocrystal/ligand and ligand/solvent interfaces. Using a novel solution to the heat diffusion equation, we fit the IPEP data to find that the nanocrystal/ligand conductances range from 88 to 135 MW m –2 K –1 and are approximately 1 order of magnitude higher than the ligand/solvent conductances, which range from 7 to 26 MW m –2 K –1 . Transient nonequilibrium molecular dynamics (MD) simulations of nanocrystal suspensions agree with IPEP data and show that ligands bound to the nanocrystal by bidentate bonds have more than twice the per-ligand conductance as those bound by monodentate bonds.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mechanism of Mesoscale Woodpile Development via Photoelectrochemical Deposition of Se–Te

A combination of experiments and optical modeling provided insight into the mechanism of mesoscale woodpile formation in response to an orthogonal shift in polarization during photoelectrochemical deposition of Se–Te. Cathodic deposition of semiconducting Se–Te using spatially uniform, linearly polarized illumination produced arrays of lamellae that were aligned parallel to the optical E-field oscillation. Continued deposition in conjunction with an orthogonal shift in the polarization direction then produced aligned bridging features that spanned the void space between, and were orthogonal to, the preexisting lamellae. The height and pitch, respectively, in each layer of the woodpile were a function of the charge density and illumination wavelength during deposition. A Monte Carlo model, in which material addition was scaled by the absorption magnitude obtained from electromagnetic simulations, produced morphologies that were nominally identical to those observed experimentally. Here, the formation of mesoscale woodpiles is consistent with a mechanism that involves a series of spontaneously initiated, concerted light–matter interactions during the photoelectrochemical deposition process.

absorption↗

Rapid QSTS Simulations for High-Resolution Comprehensive Assessment of Distributed PV

The rapid increase in penetration of distributed energy resources on the electric power distribution system has created a need for more comprehensive interconnection modeling and impact analysis. Unlike conventional scenario-based studies, quasi-static time-series (QSTS) simulations can realistically model time-dependent voltage controllers and the diversity of potential impacts that can occur at different times of year. However, to accurately model a distribution system with all its controllable devices, a yearlong simulation at 1-second resolution is often required, which could take conventional computers a computational time of 10 to 120 hours when an actual unbalanced distribution feeder is modeled. This computational burden is a clear limitation to the adoption of QSTS simulations in interconnection studies and for determining optimal control solutions for utility operations. The solutions we developed include accurate and computationally efficient QSTS methods that could be implemented in existing open-source and commercial software used by utilities and the development of methods to create high-resolution proxy data sets. This project demonstrated multiple pathways for speeding up the QSTS computation using new and innovative methods for advanced time-series analysis, faster power flow solvers, parallel processing of power flow solutions and circuit reduction. The target performance level for this project was achieved with year-long high-resolution time series solutions run in less than 5 minutes within an acceptable error.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Turbulent Regimes in Collisions of 3D Alfvén-wave Packets

Using three-dimensional gyrofluid simulations, we revisit the problem of Alfvén-wave (AW) collisions as building blocks of the Alfvénic turbulent cascade and their interplay with magnetic reconnection at magnetohydrodynamic (MHD) scales. Depending on the large-scale value of the nonlinearity parameter χ 0 (the ratio between the AW linear propagation time and nonlinear turnover time), different regimes are observed. For strong nonlinearities (χ 0 ~ 1), turbulence is consistent with a dynamically aligned, critically balanced cascade—fluctuations exhibit a scale-dependent alignment $\sin {\theta }_{{k}_{\perp }}\propto {k}_{\perp }^{-1/4}$, resulting in a ${k}_{\perp }^{-3/2}$ spectrum and ${k}_{\parallel }\propto {k}_{\perp }^{1/2}$ spectral anisotropy. At weaker nonlinearities (small χ 0 ), a spectral break marking the transition between a large-scale weak regime and a small-scale ${k}_{\perp }^{-11/5}$ tearing-mediated range emerges, implying that dynamic alignment occurs also for weak nonlinearities. At χ 0 < 1 the alignment angle ${\theta }_{{k}_{\perp }}$ shows a stronger scale dependence than in the χ 0 ~ 1 regime, namely $\sin {\theta }_{{k}_{\perp }}\propto {k}_{\perp }^{-1/2}$ at χ 0 ~ 0.5, and $\sin {\theta }_{{k}_{\perp }}\propto {k}_{\perp }^{-1}$ at χ 0 ~ 0.1. Dynamic alignment in the weak regime also modifies the large-scale spectrum, scaling approximately as ${k}_{\perp }^{-3/2}$ for χ 0 ~ 0.5 and as ${k}_{\perp }^{-1}$ for χ 0 ~ 0.1. A phenomenological theory of dynamically aligned turbulence at weak nonlinearities that can explain these spectra and the transition to the tearing-mediated regime is provided; at small χ 0 , the strong scale dependence of the alignment angle combines with the increased lifetime of turbulent eddies to allow tearing to onset and mediate the cascade at scales that can be larger than those predicted for a critically balanced cascade by several orders of magnitude. Such a transition to tearing-mediated turbulence may even supplant the usual weak-to-strong transition.

79 ASTRONOMY AND ASTROPHYSICS↗

2011.5 Revision of the Evaluated Nuclear Data Library: ENDL2011.5 (legacy and GNDS), and ENDL2011.5-direct

LLNL’s Nuclear Data and Theory Group has created the 2011.5 revised release of the Evaluated Nuclear Data Library (ENDL2011.5). ENDL2011.5 is designed to support LLNL’s current and future nuclear data needs and will be employed in nuclear reactor, nuclear security and stockpile stewardship simulations with ASC codes. This database is currently the most complete nuclear database for Monte Carlo and deterministic transport of neutrons and charged particles. This library was assembled with strong support from the ASC PEM and Attribution programs, leveraged with support from Campaign 4 and the DOE/Office of Science’s US Nuclear Data Program. This document lists the revisions made in ENDL2011.5 compared with the data existing in the original ENDL2011.2 and ENDL2011.3 releases. These changes are made in parallel with some similar revisions for ENDL2009.5. We also describe ENDL2011.5-direct that directly uses ENDF sources wherever possible.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Cold Plasma Measurements

We have continued the simulation campaign in support of our ongoing magnetospheric cold plasma research project. This project aims to develop the next-generation particle instruments to measure the properties of the cold particle populations in the Earth’s magnetosphere. For this purpose, simulations have been performed with a Particle-In-Cell (PIC) code called the Curvilinear PIC (CPIC). The code is formulated in curvilinear geometry and couples the standard PIC algorithm with algorithms for the generation and adaptation of the underlaying computational mesh. It conforms to complex objects like spacecraft and it can place more grid points in regions where higher resolution is needed. The code also features a scalable solver based on the multigrid algorithm and it is fully parallelized via domain decomposition and MPI.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit

Abstract Summary Bayesian inference in biological modeling commonly relies on Markov chain Monte Carlo (MCMC) sampling of a multidimensional and non-Gaussian posterior distribution that is not analytically tractable. Here, we present the implementation of a practical MCMC method in the open-source software package PyBioNetFit (PyBNF), which is designed to support parameterization of mathematical models for biological systems. The new MCMC method, am, incorporates an adaptive move proposal distribution. For warm starts, sampling can be initiated at a specified location in parameter space and with a multivariate Gaussian proposal distribution defined initially by a specified covariance matrix. Multiple chains can be generated in parallel using a computer cluster. We demonstrate that am can be used to successfully solve real-world Bayesian inference problems, including forecasting of new Coronavirus Disease 2019 case detection with Bayesian quantification of forecast uncertainty. Availability and implementation PyBNF version 1.1.9, the first stable release with am, is available at PyPI and can be installed using the pip package-management system on platforms that have a working installation of Python 3. PyBNF relies on libRoadRunner and BioNetGen for simulations (e.g. numerical integration of ordinary differential equations defined in SBML or BNGL files) and Dask.Distributed for task scheduling on Linux computer clusters. The Python source code can be freely downloaded/cloned from GitHub and used and modified under terms of the BSD-3 license (https://github.com/lanl/pybnf). Online documentation covering installation/usage is available (https://pybnf.readthedocs.io/en/latest/). A tutorial video is available on YouTube (https://www.youtube.com/watch?v=2aRqpqFOiS4&t=63s). Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗