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At least 1,297 records · Page 72

Applying Multimodal Mass Spectrometry to Image Tumors Undergoing Ferroptosis Following In Vivo Treatment with a Ferroptosis Inducer

Epithelial ovarian cancer (EOC) is the most common form of ovarian cancer. The poor prognosis generally associated with this disease has led to the search for improved therapies such as ferroptosis-inducing agents. Ferroptosis is a form of regulated cell death that is dependent on iron and is characterized by lipid peroxidation. Precise mapping of lipids and iron within tumors exposed to ferroptosis-inducing agents may provide insight into processes of ferroptosis in vivo and ultimately assist in the optimal deployment of ferroptosis inducers in cancer therapy. In this work, we present a method for combining matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging (MSI) with secondary ion mass spectrometry (SIMS) to analyze changes in spatial lipidomics and metal composition, respectively, in ovarian tumors following exposure to a ferroptosis inducer. Tumors were obtained by injecting human ovarian cancer tumor-initiating cells into mice, followed by treatment with the ferroptosis inducer erastin. SIMS imaging detected iron accumulation in the tumor tissue, and sequential MALDI-MS imaging of the same tissue section displayed two chemically distinct regions of lipids. Additionally, one region was associated with the iron-rich area detected with SIMS, and the other region encompassed the remainder of the tissue section. Bulk lipidomics confirmed the lipid assignments putatively assigned from the MALDI-MS data. Overall, we demonstrate the ability of multimodal MSI to identify the spatial locations of iron and lipids in the same tissue section and associate these regions with clinical pathology.

60 APPLIED LIFE SCIENCES↗

RCSB Protein Data Bank 1D tools and services

Abstract Motivation Interoperability between polymer sequences and structural data is essential for providing a complete picture of protein and gene features and helping to understand biomolecular function. Results Herein, we present two resources designed to improve interoperability between the RCSB Protein Data Bank, the NCBI and the UniProtKB data resources and visualize integrated data therefrom. The underlying tools provide a flexible means of mapping between the different coordinate spaces and an interactive tool allows convenient visualization of the 1-dimensional data over the web. Availabilityand implementation https://1d-coordinates.rcsb.org and https://rcsb.github.io/rcsb-saguaro. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Linac_Gen: Integrating Machine Learning and Particle-in-Cell Methods for Enhanced Beam Dynamics at Fermilab

Here, we introduce Linac_Gen, a tool developed at Fermilab, which combines machine learning algorithms with Particle-in-Cell methods to advance beam dynamics in linacs. Linac_Gen employs techniques such as Random Forest, Genetic Algorithms, Support Vector Machines, and Neural Networks, achieving a tenfold increase in speed for phase-space matching in Linacs over traditional methods, through the use of genetic algorithms. Crucially, Linac_Gen's adept handling of 3D field maps elevates the precision and realism in simulating beam instabilities and resonances, marking a key advancement in the field. Benchmarked against established codes, Linac_Gen demonstrates not only improved efficiency and precision in beam dynamics studies but also in the design and optimization of Linac systems, as evidenced in its application to Fermilab's PIP-II Linac project. This work represents a notable advancement in accelerator physics, marrying ML with PIC methods to set new standards for efficiency and accuracy in accelerator design and research. Linac_Gen exemplifies a novel approach in accelerator technology, offering substantial improvements in both theoretical and practical aspects of beam dynamics.

43 PARTICLE ACCELERATORS↗

FracML: A Machine Learning Based Tool to Quantify Reservoir Scale Fracture Network for CO2 Storage

Poster on “FRACML: A Machine Learning Based Tool to Quantify Reservoir Scale Fracture Network for CO2 Storage” for the CCUS 2025 conference held in Houston, Texas March 3-5, 2025. The accurate characterization of subsurface fracture networks is essential for the secure operation of carbon capture, utilization, and storage (CCUS) projects. A thorough understanding of the spatial distribution of subsurface faults and fractures is crucial for predicting CO2 plume evolution and minimizing risks such as potential leakage into overlying formations or induced seismicity. In this context, robust fracture network quantification plays a pivotal role in reservoir management, providing the data necessary to fine-tune operational parameters, and ensure the environmental and economic viability of CCUS projects. As part of the U.S. Department of Energy’s SMART (Science-informed Machine Learning for Accelerating Real-time Decisions in Subsurface Applications) initiative, we focused on the development and application of a machine learning-based tool (FRACML) designed to quantify and map fracture networks using real-world (non-synthetic) data from an active CO2 injection site. Our objective is to demonstrate the utility of this tool in improving operational efficiency and safety across CCUS sites.

artifical intelligence / machine learning (AI/ML)↗

MULTI-TECHNIQUE CHARACTERIZATION OF SUPERCONDUCTING MATERIALS FOR PARTICLE ACCELERATOR APPLICATIONS

We investigated the performance limitations of superconducting radio-frequency (SRF) cavities and materials using multiple experimental techniques. In particular, this study focuses on understanding the surface properties of nitrogen-doped Nb cavities and super?conducting thin films with higher Tc such as Nb3Sn. The main goal of this work is to use different techniques to better understand each aspect of the complex loss mechanism in superconductors to further improve the already highly efficient SRF cavities. Nitrogen doping applied to a Nb SRF cavity significantly improves the quality factor Q0 compared to a conventional Nb cavity, at an expense of reduced maximum accelerating gradient. The early quench mechanism was analyzed by using temperature maps before and during the quenching. The temperature maps revealed insignificant heating before the quench, and we concluded that nitrogen doping reduces critical magnetic fields in local regions, leading to premature quenching. To understand the origin of the increasing Q0 with the rf field, the density of states (DOS) of cold spots from nitrogen-doped and standard cavities were measured and analyzed using scanning tunneling microscopy. The results suggested that nitrogen doping reduces the spatial inhomogeneity of superconducting properties and shrinks the metallic suboxide layers, which tunes the DOS in such a way as to produce the field-induced reduction in the surface resistance. To characterize SRF thin films, an experimental setup for measuring a coplanar waveguide (CPW) resonator was developed and tested. A surface impedance measurement of the Nb film showed good agreement with the BCS calculation. The preliminary results from measurements of Nb3Sn and NbTiN films are also presented here. The nonlinear Meissner effect was investigated in Nb3Sn film CPW resonators by mea?suring the resonant frequency as a function of a parallel magnetic field. Contrary to a conventional quadratic dependence of the penetration depth ?(B) on the applied magnetic field B, as expected in s-wave superconductors, nearly a linear increase of ?(B) with B was observed. It was concluded that this behavior of ?(B) is due to weakly linked grain bound?aries on the polycrystalline Nb3Sn films, which can mimic the NLME expected in a clean d-wave superconductor.

Makita, Junki↗

Dark Energy Survey Year 3 Results: Photometric Data Set for Cosmology

In this work, we describe the Dark Energy Survey (DES) photometric data set assembled from the first three years of science operations to support DES Year 3 cosmologic analyses, and provide usage notes aimed at the broad astrophysics community. Y3 GOLD improves on previous releases from DES, Y1 GOLD, and Data Release 1 (DES DR1), presenting an expanded and curated data set that incorporates algorithmic developments in image detrending and processing, photometric calibration, and object classification. Y3 GOLD comprises nearly 5000 deg 2 of grizY imaging in the south Galactic cap, including nearly 390 million objects, with depth reaching a signal-to-noise ratio ~10 for extended objects up to iAB ~ 23.0, and top-of-the-atmosphere photometric uniformity <3 mmag. Compared to DR1, photometric residuals with respect to Gaia are reduced by 50%, and per-object chromatic corrections are introduced. Y3 GOLD augments DES DR1 with simultaneous fits to multi-epoch photometry for more robust galactic color measurements and corresponding photometric redshift estimates. Y3 GOLD features improved morphological star–galaxy classification with efficiency >98% and purity >99% for galaxies with 19 < i AB < 22.5. Additionally, it includes per-object quality information, and accompanying maps of the footprint coverage, masked regions, imaging depth, survey conditions, and astrophysical foregrounds that are used to select the cosmologic analysis samples.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A drift multiwire proportional counter for cosmic soft X-ray imaging

Multiwire proportional counters with 1 micrometer polypropylene windows, of dimensions 75 mm x 75 mm and 100 mm x 100 mm, have been built to map soft cosmic X-rays. The counters are constructed with a large drift region which makes it possible to use the center-of-gravity technique to improve the counter's efficiency and position resolution. Using 330 torr of propane as the gas fill and an anode plane composed of 20 micrometer diameter, gold-plated tungsten wire spaced 1mm apart, a position resolution of better than 280 micrometers (FWHM) in two orthogonal directions at an X-ray energy of 0.94 keV was achieved.

Reid, P. B.↗

Compatibility study of the Magsat data and aeromagnetic data in the eastern Piedmont of US

Data from a 2 day period recorded by Magsat were used to produce world magnetic maps of the scalar total field and three vector component total fields. Subtracting the reference field of Magsat 6/80, a scalar anomalous field and three vector component anomalous fields were also mapped. After removing 718 bad points from the original data, every fifth point was picked for contouring. While the main geomagnetic field of the Earth is surprisingly well mapped considering the short data period, the anomaly maps suffer from data sparseness. The entire Magsat file collected at altitudes of 500-700 m in nonmountainous terrain and at 900-1,000 m in mountainous terrain was averaged to reduce the total data to 6,500 measurements, yielding a 0.1 deg sampling interval along the flight path. A U.S. aeromagnetic anomaly surface map was produced and the field was upward continued to a 300 km altitude. Differences in anomaly structure between the POGO data and the map produced were attributed to insufficient removal of the reference field. Reprocessing of the data using the GSFC reference field (9/80-2) should remove the low harmonic field and improve the anomalous field structure.

Won, I. J.↗

A comparison of remote sensing techniques for Minnesota wetlands classification

A wetland classification study in a typically complex 650 sq km test site in east central Minnesota compared the time, cost and accuracy of manually interpreted 1:24,000 scale color infrared aerial photographs with digital analysis of Landsat data. The comparison was between the same general wetland and non-wetland classes; accuracy of both systems was evaluated with intensive ground verification. For the same general classes, the overall mapping accuracy was 96 percent for the aerial photo interpretation and 71 percent for Landsat double-date classification. Results with maximum likelihood and SECHO classifiers were the same, 71 percent, while mapping accuracy with a layered classifier was only 66 percent. Compared to a general geometric correction and a single-date data set, geographic position and classification accuracy improved when a precision geometric correction and a double-date data set were used. Landsat digital analysis was faster, 24 vs. 90 days, but photointerpretation was more economical at $0.15/hectare (including all costs of procurement, processing and analysis), compared with Landsat costs of $0.35/hectare (not including costs of data procurement, processing prior to delivery to user and related overhead).

Werth, L. F.↗

Atmospheric Modeling And Sensor Simulation (AMASS) study

The capabilities of the atmospheric modeling and sensor simulation (AMASS) system were studied in order to enhance them. This system is used in processing atmospheric measurements which are utilized in the evaluation of sensor performance, conducting design-concept simulation studies, and also in the modeling of the physical and dynamical nature of atmospheric processes. The study tasks proposed in order to both enhance the AMASS system utilization and to integrate the AMASS system with other existing equipment to facilitate the analysis of data for modeling and image processing are enumerated. The following array processors were evaluated for anticipated effectiveness and/or improvements in throughput by attachment of the device to the P-e: (1) Floating Point Systems AP-120B; (2) Floating Point Systems 5000; (3) CSP, Inc. MAP-400; (4) Analogic AP500; (5) Numerix MARS-432; and (6) Star Technologies, Inc. ST-100.

Parker, K. G.↗

Application of TOMS data to weather analysis models

Recent studies of the errors of analysis reflected by numerical weather analysis models are reviewed. Despite the improvements in data coverage and data ingestion methods in the past decade, it is found that significant errors of analysis persist. A case study comparison of Total Ozone Mapping Spectrometer (TOMS) data and aircraft data with the NMC analysis over the North Atlantic is used to illustrate the size of local errors encountered. The possibility of using TOMS images to locate meteorologically significant features such as troughs and ridges near the tropopause is discussed.

Nastrom, Gregory D.↗

Low-Altitude AVIRIS Data for Mapping Land Cover in Yellowstone National Park: Use of Isodata Clustering Techniques

Northeast Yellowstone National Park (YNP) has a diversity of forest, range, and wetland cover types. Several remote sensing studies have recently been done in this area, including the NASA Earth Observations Commercial Applications Program (EOCAP) hyperspectral project conducted by Yellowstone Ecosystems Studies (YES) on the use of hyperspectral imaging for assessing riparian and in-stream habitats. In 1999, YES and NASA's Commercial Remote Sensing Program Office began collaborative study of this area, assessing the potential of synergistic use of hyperspectral, synthetic aperture radar (SAR), and multiband thermal data for mapping forest, range, and wetland land cover. Since the beginning, a quality 'reference' land cover map has been desired as a tool for developing and validating other land cover maps produced during the project. This paper recounts an effort to produce such a reference land cover map using low-altitude Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data and unsupervised classification techniques. The main objective of this study is to assess ISODATA classification for mapping land cover in Northeast YNP using select bands of low-altitude AVIRIS data. A secondary, more long-term objective is to assess the potential for improving ISODATA-based classification of land cover through use of principal components analysis and minimum noise fraction (MNF) techniques. This paper will primarily report on work regarding the primary research objective. This study focuses on an AVIRIS cube acquired on July 23, 1999, by the confluence of Soda Butte Creek with the Lamar River. Range and wetland habitats dominate the image with forested habitats being a comparatively minor component of the scene. The scene generally tracks from southwest to northeast. Most of the scene is valley bottom with some lower side slopes occurring on the western portion. Elevations within the AVIRIS scene range from approximately 1998 to 2165 m above sea level, based on US Geological Survey (USGS) 30-m digital elevation model (DEM) data. Despain and the National Park Service (NPS) provide additional description of the study area.

Spruce, Joseph P.↗

Response Surface Methods For Spatially-Resolved Optical Measurement Techniques

Response surface methods (or methodology), RSM, have been applied to improve data quality for two vastly different spatially-resolved optical measurement techniques. In the first application, modern design of experiments (MDOE) methods, including RSM, are employed to map the temperature field in a direct-connect supersonic combustion test facility at NASA Langley Research Center. The laser-based measurement technique known as coherent anti-Stokes Raman spectroscopy (CARS) is used to measure temperature at various locations in the combustor. RSM is then used to develop temperature maps of the flow. Even though the temperature fluctuations at a single point in the flowfield have a standard deviation on the order of 300 K, RSM provides analytic fits to the data having 95% confidence interval half width uncertainties in the fit as low as +/- 30 K. Methods of optimizing future CARS experiments are explored. The second application of RSM is to quantify the shape of a 5-meter diameter, ultra-lightweight, inflatable space antenna at NASA Langley Research Center. Photogrammetry is used to simultaneously measure the shape of the antenna at approximately 500 discrete spatial locations. RSM allows an analytic model to be developed that describes the shape of the majority of the antenna with an uncertainty of 0.4 mm, with 95% confidence. This model would allow a quantitative comparison between the actual shape of the antenna and the original design shape. Accurately determining this shape also allows confident interpolation between the measured points. Such a model could, for example, be used for ray tracing of radio-frequency waves up to 95 GHz. to predict the performance of the antenna.

Danehy, P. M.↗

Thermal Vacuum Test Correlation of a Zero Propellant Load Case Thermal Capacitance Propellant Gauging Analytical Model

This thesis describes the development and correlation of a thermal model that forms the foundation of a thermal capacitance spacecraft propellant load estimator. Specific details of creating the thermal model for the diaphragm propellant tank used on NASA's Magnetospheric Multiscale spacecraft using ANSYS and the correlation process implemented are presented. The thermal model was correlated to within plus or minus 3 degrees Celsius of the thermal vacuum test data, and was determined sufficient to make future propellant predictions on MMS. The model was also found to be relatively sensitive to uncertainties in applied heat flux and mass knowledge of the tank. More work is needed to improve temperature predictions in the upper hemisphere of the propellant tank where predictions were found to be 2 to 2.5 C lower than the test data. A road map for applying the model to predict propellant loads on the actual MMS spacecraft toward its end of life in 2017-2018 is also presented.

Gauging↗

An AeroCom–AeroSat study: intercomparison of satellite AOD datasets for aerosol model evaluation

To better understand and characterize current uncertainties in the important observational constraint of climate models of aerosol optical depth (AOD), we evaluate and intercompare 14 satellite products, representing nine different retrieval algorithm families using observations from five different sensors on six different platforms. The satellite products (super-observations consisting of 1°×1° daily aggregated retrievals drawn from the years 2006, 2008 and 2010) are evaluated with AErosol RObotic NETwork (AERONET) and Maritime Aerosol Network (MAN) data. Results show that different products exhibit different regionally varying biases (both under- and overestimates) that may reach ±50 %, although a typical bias would be 15 %–25 % (depending on the product). In addition to these biases, the products exhibit random errors that can be 1.6 to 3 times as large. Most products show similar performance, although there are a few exceptions with either larger biases or larger random errors. The intercomparison of satellite products extends this analysis and provides spatial context to it. In particular, we show that aggregated satellite AOD agrees much better than the spatial coverage (often driven by cloud masks) within the 1°×1° grid cells. Up to ∼50 % of the difference between satellite AOD is attributed to cloud contamination. The diversity in AOD products shows clear spatial patterns and varies from 10 % (parts of the ocean) to 100 % (central Asia and Australia). More importantly, we show that the diversity may be used as an indication of AOD uncertainty, at least for the better performing products. This provides modellers with a global map of expected AOD uncertainty in satellite products, allows assessment of products away from AERONET sites, can provide guidance for future AERONET locations and offers suggestions for product improvements. We account for statistical and sampling noise in our analyses. Sampling noise, variations due to the evaluation of different subsets of the data, causes important changes in error metrics. The consequences of this noise term for product evaluation are discussed.

Aerosol↗

Assessment of Control Algorithms for Mars Entry Vehicles With Flap-Based Trajectory Control Under Uncertainty

Flap-based steering systems on blunt-body entry vehicles may improve flight performance relative to heritage bank-angle steering systems. Successful implementation of articulating aerodynamic flaps on a hypersonic entry vehicle requires an active control system to map angle of attack and sidelip angle commands to flap deflection commands. Here, a successive-linearization model prective control algorithm, as a linear quadratic regulator, are formulated, designed, and assessed to address this multiple input multiple output control problem. These two control algorithms are assessed under uncertainty in Monte Carlo simulations for various control profiles and vehicle configurations. Results indicate that while both control algorithms provide successful command tracking under uncertainty, the model predictive controller provides a lower mean and integral error, as well as greater robustness, relative to the linear-quadratic regulator.

Daniel L Engel↗

Linac_Gen: integrating machine learning and particle-in-cell methods for enhanced beam dynamics at Fermilab

Here, we introduce Linac_Gen, a tool developed at Fermilab, which combines machine learning algorithms with Particle-in-Cell methods to advance beam dynamics in linacs. Linac_Gen employs techniques such as Random Forest, Genetic Algorithms, Support Vector Machines, and Neural Networks, achieving a tenfold increase in speed for phase-space matching in linacs over traditional methods through the use of genetic algorithms. Crucially, Linac_Gen's adept handling of 3D field maps elevates the precision and realism in simulating beam instabilities and resonances, marking a key advancement in the field. Benchmarked against established codes, Linac_Gen demonstrates not only improved efficiency and precision in beam dynamics studies but also in the design and optimization of linac systems, as evidenced in its application to Fermilab's PIP-II linac project. This work represents a notable advancement in accelerator physics, marrying ML with PIC methods to set new standards for efficiency and accuracy in accelerator design and research. Linac_Gen exemplifies a novel approach in accelerator technology, offering substantial improvements in both theoretical and practical aspects of beam dynamics.

43 PARTICLE ACCELERATORS↗

Experimental Investigation of Air-Fuel Equivalence Ratio Effects on Advanced Dual-fuel Diesel/Ammonia Combustion on a Single-Cylinder Medium-Duty Diesel Engine at High Load

Ammonia (NH3) has gathered a lot of interest as a low-lifecycle-carbon fuel in sectors with high weight and distance requirements, such as shipping. The International Maritime Organization (IMO) mandates a 70-80% greenhouse gas (GHG) reduction by 2040, which is only possible with advanced engine technologies and fuels like NH3. Prior research studies at the US Department of Energy’s Oak Ridge National Laboratory have shown strong performance with NH3 under dual-fuel mode using conventional diesel combustion (CDC) manifold air pressure (MAP) settings. Diesel airflow was initially used to simplify retrofitting (no turbocharger modification), which resulted in air-fuel equivalence ratios (λ) greater than 1.5. To characterize potential improvements in dual-fuel NH3 combustion performance at richer in-cylinder conditions, a global λ sweep using a diesel pilot ignition (DPI) strategy with diesel fuel injected near top-dead center (TDC) and a reactivity-controlled compression ignition (RCCI) injection strategy with diesel fuel injected earlier during the compression stroke were compared. The experiments were conducted at 1200 RPM and 12.6 bar (75% load), and λ was varied by decreasing the commanded air flow to the engine at greater than 90% ammonia energy substitution (AES) level. A diesel injection timing sweep was conducted for both the combustion modes at fixed λ, and the timing with the lowest engine-out N2O emissions was identified. The results indicated an optimal balance between CO2, eq and thermal efficiency benefits for both DPI and RCCI injection strategy cases compared to CDC at a λ of 1.4. The indicated N-based emissions exhibited a strong correlation to the ratio of CA5–50 and ignition delay for DPI, but no apparent trend emerged for the RCCI injection strategy at the tested boundary conditions.

Tyrewala, Daanish [ORNL] (ORCID:0000000208599324)↗