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At least 1,297 records · Page 72

Eulerian finite element simulations of the drop weight impact test with a dislocation Density-based continuum model

During a drop weight impact test, the kinetic energy of the falling weight is transferred into the sample resting on the anvil. The plastic deformation in the sample is an important mechanism for the dissipation of the input kinetic energy. We use Eulerian finite element analysis to simulate the deformation and temperature evolution in a 1,3,5-trinitro-1,3,5-triazine (RDX) sample consisting of multiple crystals. In Eulerian finite element simulations, the mesh moves relative to the material. After every change of position between the mesh and the material, the state variables are interpolated to the new mesh position, i.e., advection. In an effort to reduce the advection errors, we use a rate form of a dislocation density-based continuum model by Luscher et al. Here, the simulations predict localization of plastic deformation, and plastic dissipation as a significant source of heat generation.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Noise and error analysis and optimization in particle-based kinetic plasma simulations

In this paper we analyze the noise in macro-particle methods used in plasma physics and fluid dynamics, leading to approaches for minimizing the total error, focusing on electrostatic models in one dimension. We begin by describing kernel density estimation for continuous values of the spatial variable x, expressing the kernel in a form in which its shape and width are represented separately. The covariance matrix of the noise in the density is computed, first for uniform true density. The bandwidth of the covariance matrix C(x,y) is related to the width of the kernel. A feature that stands out is the presence of constant negative terms in the elements of the covariance matrix both on and off-diagonal. These negative correlations are related to the fact that the total number of particles is fixed at each time step; they also lead to the property ∫C(x,y)dy = 0. We investigate the effect of these negative correlations on the electric field computed by Gauss's law, finding that the noise in the electric field is related to a process called the Ornstein-Uhlenbeck bridge, leading to a covariance matrix of the electric field with variance significantly reduced relative to that of a Brownian process. For non-constant density, p(x), still with continuous x, we analyze the total error in the density estimation and discuss it in terms of bias-variance optimization (BVO). For some characteristic length l, determined by the density and its second derivative, and kernel width h, having too few particles within h leads to too much variance; for h that is large relative to l, there is too much smoothing of the density. The optimum between these two limits is found by BVO. For kernels of the same width, it is shown that this optimum (minimum) is weakly sensitive to the kernel shape. Next, we repeat the analysis for x discretized on a grid. In this case the charge deposition rule is determined by a particle shape. An important property to be respected in the discrete system is the exact preservation of total charge on the grid; this property is necessary to ensure that the electric field is equal at both ends, consistent with periodic boundary conditions. We find that if the particle shapes satisfy a partition of unity property, the particle charge deposited on the grid is conserved exactly. Further, if the particle shape is expressed as the convolution of a kernel with another kernel that satisfies the partition of unity, then the particle shape obeys the partition of unity. This property holds for kernels of arbitrary width, including widths that are not integer multiples of the grid spacing. Furthermore, we show results relaxing the approximations used to do BVO optimization analytically, by doing numerical computations of the total error as a function of the kernel width, on a grid in x. The comparison between numerical and analytical results shows good agreement over a range of particle shapes. We discuss the practical implications of our results, including the criteria for design and implementation of computationally efficient particle shapes that take advantage of the developed theory.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Integrated Hourly Meteorological Database of 20 Meteorological Stations (1981-2022) for Watershed Function SFA Hydrological Modeling

This dataset contains (a) a script “R_met_integrated_for_modeling.R”, and (b) associated input CSV files: 3 CSV files per location to create a 5-variable integrated meteorological dataset file (air temperature, precipitation, wind speed, relative humidity, and solar radiation) for 19 meteorological stations and 1 location within Trail Creek from the modeling team within the East River Community Observatory as part of the Watershed Function Scientific Focus Area (SFA). As meteorological forcings varied across the watershed, a high-frequency database is needed to ensure consistency in the data analysis and modeling. We evaluated several data sources, including gridded meteorological products and field data from meteorological stations. We determined that our modeling efforts required multiple data sources to meet all their needs. As output, this dataset contains (c) a single CSV data file (*_1981-2022.csv) for each location (20 CSV output files total) containing hourly time series data for 1981 to 2022 and (d) five PNG files of time series and density plots for each variable per location (100 PNG files). Detailed location metadata is contained within the Integrated_Met_Database_Locations.csv file for each point location included within this dataset, obtained from Varadharajan et al., 2023 doi:10.15485/1660962. This dataset also includes (e) a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and (f) a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type. Review the (g) ReadMe_Integrated_Met_Database.pdf file for additional details on the script, methods, and structure of the dataset.The script integrates Northwest Alliance for Computational Science and Engineering’s PRISM gridded data product, National Oceanic and Atmospheric Administration’s NCEP-NCAR Reanalysis 1 gridded data product (through the `RCNEP` R package, Kemp et al., doi:10.32614/CRAN.package.RNCEP), and analytical-based calculations. Further, this script downscales the input data into hourly frequency, which is necessary for the modeling efforts.

54 ENVIRONMENTAL SCIENCES↗

Data Mining and Visualization of High-Dimensional ICME Data for Additive Manufacturing

Integrated computational materials engineering (ICME) methods combining CALPHAD with process-based simulations can produce rich, high-dimensional data for alloy and process design. In ICME methods for metallurgical applications, the visualization and interpretation of such high-dimensional data has previously been through heat maps represented in 2 or 3 dimensions. While such an approach is ideal when one variable is varied at a time, in the case of high-dimensional data with multiple variables varied simultaneously, as is the case in additive manufacturing, interpreting the trends through two- or three-dimensional heat maps becomes challenging. Here, we propose a strategy of mixed visual data mining and quantitative analysis for high-dimensional metallurgical and process data using high-throughput thermodynamic calculations. Two case studies show the application of the proposed approach. The first case study investigated the effects of feedstock chemistry on the δ ferrite formation in 316L stainless steel powders used for binder jet additive manufacturing. The second case study linked Scheil–Gulliver calculations to a process model for dissimilar joining of aluminum alloys 5356 and 6111 during laser hot-wire additive manufacturing. Both cases contained thousands of calculated data points, showcasing the utility of visual data analysis through parallel coordinate plotting, Pearson correlation coefficient matrices, and scatter matrices compared to traditional process maps. These visualization techniques can be extended to many additive manufacturing problems to capture process–structure–property relationships for additively manufactured components.

36 MATERIALS SCIENCE↗

Hyperspectral imaging for real-time waste materials characterization and recovery using endmember extraction and abundance detection

Hyperspectral imaging, combined with advanced spectral unmixing techniques and artificial intelligence, offers a powerful solution for improving material identification and classification. Here, this study evaluates the effectiveness of the pixel purity index and the sequential maximum angle convex cone algorithms in extracting and validating spectral signatures from pure samples of paper components (cellulose and lignin) and plastic (polypropylene). Principal-component analysis showed that both algorithms captured nearly all relevant variance for the tested materials. Spectral signatures were compared using the spectral angle mapper, revealing high similarity in the short-wave infrared region and greater variability in the visible near-infrared range. The methodology was then applied to a disposable coffee cup to detect and quantify mixed materials, accurately estimating material abundance and object area with less than 1% error. This approach enhances material classification, supporting product verification, quality control, and automated sorting for sustainable waste management and resource recovery.

36 MATERIALS SCIENCE↗

Evidence for top quark production in nucleus-nucleus collisions

We report droplets of quark-gluon plasma (QGP), an exotic state of strongly interacting quantum chromodynamics (QCD) matter, are routinely produced in heavy nuclei high-energy collisions. Although the experimental signatures marked a paradigm shift away from expectations of a weakly coupled QGP, a challenge remains as to how the locally deconfined state with a lifetime of a few fm can be resolved. The only colored particle that decays mostly within the QGP is the top quark. Here we demonstrate, for the first time, that top quark decay products are identified, irrespective of whether interacting with the medium (bottom quarks) or not (leptonically decaying W bosons). Using 1.7±0.1 nb -1 of lead-lead (A = 208) collision data recorded by the CMS experiment at a nucleon-nucleon center-of-mass energy of 5.02 TeV, we report evidence of top quark pair ($t\bar{t}$) production. Dilepton final states are selected, and the cross section ($σ_{t\bar{t}}$) is measured from a likelihood fit to a multivariate discriminator using lepton kinematic variables. The $σ_{t\bar{t}}$ measurement is additionally performed considering the jets originating from the hadronization of bottom quarks, which improve the sensitivity to the $t\bar{t}$ signal process. After background subtraction and analysis corrections, the measured $σ_{t\bar{t}}$ is 2.56 ± 0.82(tot) and 2.02 ± 0.69(tot)μb in the two cases, respectively, consistent with predictions from perturbative QCD.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Steady Long-term Slip Rate on the Blue Cut Fault: Implications for Ongoing Block Rotation in the Eastern Transverse Ranges, CA

We report the Eastern Transverse Ranges (ETR) province of California contains a system of E-W-trending left-lateral faults accommodating clockwise block rotation between the San Andreas Fault (SAF) system in the Coachella Valley and the Eastern California Shear Zone (ECSZ) in the Mojave Desert. Building upon established geometric relationships, we estimate that this rotation across the ETR may transfer right-lateral strain from the SAF to the ECSZ at a time-averaged rate of ~4.3–7.7 mm/yr. Through geomorphic mapping and the analysis of 38 10 Be surface exposure samples, we derive a long-term slip rate of 1.26 ± 0.50 (2σ) mm/yr over the late Pleistocene, yet analysis of the displacement record indicates a rate decrease ~71 kya. While a rate change on this fault could have implications for possible plate boundary reorganization in this area, we argue that this slip rate variability more likely reflects routine fluctuation about a steady lifetime slip rate.

58 GEOSCIENCES↗

Deep Learning for Subsurface Flow: A Comparative Study of U‐Net, Fourier Neural Operators, and Transformers in Underground Hydrogen Storage

Subsurface flow research is essential for the sustainable management of natural resources and the environment. Deep learning (DL) has significantly advanced this field by developing efficient and accurate surrogate models to replace computationally expensive physics‐based simulations. These surrogate models are commonly used to predict the spatiotemporal evolution of state variables, such as gas saturation and reservoir pressure, in heterogeneous geological formations. Despite the various DL models applied to this task, there is a lack of studies systematically comparing their performance. This absence of comparative analysis leads to somewhat arbitrary DL model selection in subsurface flow research, resulting in suboptimal performance and potentially inaccurate predictions. To bridge this gap, we conduct a systematic comparison study of three popular DL architectures—U‐Net, Fourier Neural Operators (FNO), and Segmentation Transformer (SETR)—in surrogate modeling of underground hydrogen storage (UHS). We focus on UHS due to its promise of enhancing clean energy resilience and its cyclic operational conditions that represent common scenarios in various subsurface applications. We evaluate the models based on accuracy, training cost, and inference speed. The comparison shows that U‐Net achieves the highest accuracy, followed by SETR and FNO. Despite its lower accuracy, FNO has the highest inference speed. SETR offers competitive accuracy with the least training memory usage, demonstrating the potential of transformers in learning subsurface flow. Our results provide guidance for selecting DL models for surrogate modeling in a wide range of subsurface flow problems.

42 ENGINEERING↗

Structural insight on assembly-line catalysis in terpene biosynthesis

Fusicoccadiene synthase from Phomopsis amygdali (PaFS) is a unique bifunctional terpenoid synthase that catalyzes the first two steps in the biosynthesis of the diterpene glycoside Fusicoccin A, a mediator of 14-3-3 protein interactions. The prenyltransferase domain of PaFS generates geranylgeranyl diphosphate, which the cyclase domain then utilizes to generate fusicoccadiene, the tricyclic hydrocarbon skeleton of Fusicoccin A. Here, we use cryo-electron microscopy to show that the structure of full-length PaFS consists of a central octameric core of prenyltransferase domains, with the eight cyclase domains radiating outward via flexible linker segments in variable splayed-out positions. Cryo-electron microscopy and chemical crosslinking experiments additionally show that compact conformations can be achieved in which cyclase domains are more closely associated with the prenyltransferase core. This structural analysis provides a framework for understanding substrate channeling, since most of the geranylgeranyl diphosphate generated by the prenyltransferase domains remains on the enzyme for cyclization to form fusicoccadiene.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Thermodynamically consistent incorporation of the Langmuir adsorption model into compressible fluctuating hydrodynamics

For a gas–solid interfacial system where chemical species undergo reversible adsorption, we develop a mesoscopic stochastic modeling method that simulates both gas-phase hydrodynamics and surface coverage dynamics by coupling the Langmuir adsorption model with compressible fluctuating hydrodynamics. To this end, we derive a thermodynamically consistent mass–energy update scheme that accounts for how the mass and energy variables in the gas and surface subsystems should be updated according to the changes in the number of molecules of each species in each subsystem due to adsorption and desorption events. By performing a stochastic analysis for the ideal Langmuir model and the full hydrodynamic system, we analytically confirm that our mass–energy update scheme captures thermodynamic equilibrium predicted by equilibrium statistical mechanics. We find that an internal energy correction term is needed, which is attributed to the difference in the mean kinetic energy of gas molecules colliding with the surface from that computed from the Maxwell–Boltzmann distribution. By performing an equilibrium simulation study for an ideal gas mixture of CO and Ar, with CO undergoing reversible adsorption, we validate our overall simulation method and implementation.

Adsorption↗

Local-scale heterogeneity of soil thermal dynamics and controlling factors in a discontinuous permafrost region

In permafrost regions, the strong spatial and temporal variability in soil temperature cannot be explained by the weather forcing only. Understanding the local heterogeneity of soil thermal dynamics and their controls is essential to understand how permafrost systems respond to climate change and to develop process-based models or remote sensing products for predicting soil temperature. In this study, we analyzed soil temperature dynamics and their controls in a discontinuous permafrost region on the Seward Peninsula, Alaska. We acquired one-year temperature time series at multiple depths (at 5 or 10 cm intervals up to 85 cm depth) at 45 discrete locations across a 2.3 km 2 watershed. We observed a larger spatial variability in winter temperatures than that in summer temperatures at all depths, with the former controlling most of the spatial variability in mean annual temperatures. We also observed a strong correlation between mean annual ground temperature at a depth of 85 cm and mean annual or winter season ground surface temperature across the 45 locations. We demonstrate that soils classified as cold, intermediate, or warm using hierarchical clustering of full-year temperature data closely match their co-located vegetation (graminoid tundra, dwarf shrub tundra, and tall shrub tundra, respectively). We show that the spatial heterogeneity in soil temperature is primarily driven by spatial heterogeneity in snow cover, which induces variable winter insulation and soil thermal diffusivity. These effects further extend to the subsequent summer by causing variable latent heat exchanges. Finally, we discuss the challenges of predicting soil temperatures from snow depth and vegetation height alone by considering the complexity observed in the field data and reproduced in a model sensitivity analysis.

54 ENVIRONMENTAL SCIENCES↗

Transitional events in the spectrophotometric regime between stripped envelope and superluminous supernovae

ABSTRACT The division between stripped-envelope supernovae (SE-SNe) and superluminous supernovae (SLSNe) is not well-defined in either photometric or spectroscopic space. While a sharp luminosity threshold has been suggested, there remains an increasing number of transitional objects that reach this threshold without the spectroscopic signatures common to SLSNe. In this work, we present data and analysis on four SNe transitional between SE-SNe and SLSNe; the He-poor SNe 2019dwa and 2019cri, and the He-rich SNe 2019hge and 2019unb. Each object displays long-lived and variable photometric evolution with luminosities around the SLSN threshold of Mr < −19.8 mag. Spectroscopically however, these objects are similar to SE-SNe, with line velocities lower than either SE-SNe and SLSNe, and thus represent an interesting case of rare transitional events.

Prentice, S. J. (ORCID:0000000304866242)↗

Effect of the space weather conditions on the Earth magnetosphere soft X-ray emissivity

The aim of the study is to model and characterize the soft X-ray emissivity on the Earth magnetosphere for different space weather conditions (SWC), providing information to interpret the soft X-ray measurements of the Solar wind Magnetosphere Ionosphere Link Explorer space mission. The MHD code pluto in spherical coordinates is used to perform parametric studies with respect to the solar wind (SW) dynamic pressure (considering density and velocity effects independently) as well as the IMF intensity and orientation, predicting the soft X-ray emissivity for different SWC. The integrated soft X-ray emissivity inside the magnetosheath is calculated as a proxy of the soft X-ray emission dependencies with the SWC independently of the satellite orbit and camera line of sight. The analysis indicates fluctuations of the interplanetary magnetic field (IMF) orientation and magnitude may significantly affect the measured soft X-ray emission although changes in the SW dynamic pressure should be the main source of variability. The southward IMF orientation leads to the configuration with the largest soft X-ray emissivity and northward to the lowest. Strongly distorted magnetospheres explored in configurations showing SW and IMF parameters comparable to the impact of interplanetary coronal mass ejections may show a decrease of the soft X-ray emissivity as the IMF magnitude increases, explained by the strong magnetosphere compression and constriction of the magnetosheath region where the soft X-ray emissivity maximum is located. The simulations also indicate large excursions of the soft X-ray emissivity maximum inside the magnetosheath as the IMF magnitude and SW dynamic pressure fluctuate particularly for radial and ecliptic IMF orientations.

Earth↗

Stomata in-sight: Integrating live confocal microscopy with leaf gas exchange and environmental control

Stomatal anatomy (aperture area, length, and width) influences leaf-level physiology traits including conductance to water vapor. Stomatal anatomy can be visualized in situ by microscopy, but the difficulty of regulating the atmospheric environment of a microscope stage means that the conditions under which imaging is done are rarely physiologically relevant. Alternatively, leaf gas exchange instruments that measure gas fluxes reflect stomatal anatomical characteristics in aggregate, but the relative strengths of anatomical traits to control water use (e.g. size vs density) cannot be firmly established. To reconcile the microscopic stomatal characteristics with leaf-level gas exchange, we describe a tool that combines laser scanning confocal microscopy, gas exchange instruments, and machine-learning image analysis to simultaneously observe anatomical characteristics of many (>40) stomata alongside leaf-level traits like photosynthesis, transpiration, and stomatal conductance. We demonstrate how the tool has the resolution capable of quantifying aperture sizes and variability in maize (Zea mays) leaves under 5 steady-state light/pCO 2 treatments while tightly controlling other environmental variables like relative humidity and temperature. A model used to calculate stomatal conductance from measured apertures and stomatal density accurately matched stomatal conductance measured by gas exchange. This technical advancement will provide insight on how stomatal anatomy and function trade off to influence stomatal conductance and leaf-level water use efficiency.

59 BASIC BIOLOGICAL SCIENCES↗

Compensation of heat load deformations using adaptive optics for the ALS upgrade: a wave optics study

In this paper, a realistic wave optics simulation method has been developed to study how wavefront distortions originating from heat load deformations can be corrected using adaptive X-ray optics. Several planned soft X-ray and tender X-ray insertion-device beamlines in the Advanced Light Source upgrade rely on a common design principle. A flat, first mirror intercepts the white beam; vertical focusing is provided by a variable-line-space monochromator; and horizontal focusing comes from a single, pre-figured, adaptive mirror. A variety of scenarios to cope with thermal distortion in the first mirror are studied by finite-element analysis. The degradation of the intensity distribution at the focal plane is analyzed and the adaptive optics that correct it is modeled. The range of correctable wavefront errors across the operating range of the beamlines is reported in terms of mirror curvature and spatial frequencies. The software developed is a one-dimensional wavefront propagation package made available in the OASYS suite, an adaptable, customizable and efficient beamline modeling platform.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Geographical Insights into Suicide Mortality Through Spatial Machine Learning

Suicide mortality is a leading cause of death in the United States, with an upward trend that emphasizes its significance as a public health issue. Previous research has employed global models like ordinary least squares (OLS) regression and local models such as geographically weighted regression (GWR). While local models are useful for analyzing spatial variations in suicide mortality, they share limitations with traditional global models, particularly about their inability to handle multi-collinearity and non-linear relationships. Machine learning approaches, like random forests (RF), can address some of these limitations but often fail to account for spatial variability. This gap highlights the need for spatial ML models specifically designed to tackle suicide mortality. This research seeks to fill this void by using a geographically weighted random forest model (GWRF) to examine the associations between county-level suicide mortality in the U.S. from 2010 to 2020 and various social and environmental determinants of health. A key aspect of our methodology is disciplined feature selection, which reduces the pool of explanatory variables by about 90%. This refinement enhances the explanatory power of both global (R2 improved from 0.59 to 0.67) and local (R2 improved from 0.64 to 0.67) RF models while reducing their run times. An analysis of the importance scores for these selected features reveals that the drivers of suicide mortality vary by context. Thus, to effectively address regional disparities and inform targeted public health interventions, a holistic approach that incorporates multiple county-level characteristics is essential.

Lebakula, Viswadeep [ORNL] (ORCID:0000000152935914↗

A conserved glycan motif induces broadly reactive functional antibodies against the zoonotic pathogen Streptococcus suis

Streptococcus suis is a largely neglected but emerging bacterial zoonotic pathogen of global concern for animal welfare, antibiotic resistance development, and human health. No effective vaccines are now available. Here, we identified and characterized the function and structure of two cell wall polysaccharide variants in pathogenic S. suis strains using genetic deletion and (heterologous) complementation, lectin staining, glycan composition analysis, and specialized NMR spectroscopy. Both glycan variants were anionic polymers that differed in the presence of glucose in the side chain as a result of allelic variation in a glycosyltransferase gene. Deletion of this variable glycosyltransferase revealed an identical glycan “core” and affected S. suis morphology and lysozyme resistance. Immunization of pigs with this core domain elicited antibodies that recognized antigenically diverse pathogenic S. suis strains and induced complement deposition on encapsulated pathogenic S. suis strains. This study provides valuable insights for developing next-generation glycoconjugate vaccines, whereby a single-glycan target could protect against the emerging zoonotic pathogen S. suis.

60 APPLIED LIFE SCIENCES↗

On the Correspondence between Seasonal Forecast Biases and Long-Term Climate Biases in Sea Surface Temperature

In this paper, the correspondence between mean sea surface temperature (SST) biases in retrospective seasonal forecasts (hindcasts) and long-term climate simulations from five global climate models is examined to diagnose the degree to which systematic SST biases develop on seasonal time scales. The hindcasts are from the North American Multi-Model Ensemble and the climate simulations are from the Coupled Model Intercomparison Project. The analysis suggests that most robust climatological SST biases begin to form within 6 months of a realistically initialized integration, although the growth rate varies with location, time, and model. In regions with large biases, interannual variability and ensemble spread is much smaller than the climatological bias. Additional ensemble hindcasts of the Community Earth System Model with a different initialization method suggest that initial conditions do matter for the initial bias growth, but the overall global bias patterns are similar after 6 months. A hindcast approach is more suitable to study biases over the tropics and sub-tropics than over the extra-tropics because of smaller initial biases and faster bias growth. The rapid emergence of SST biases makes it likely that fast processes with times scales shorter than the seasonal time scales in the atmosphere and upper ocean are responsible for a substantial part of the climatological SST biases. Studying the growth of biases may provide important clues to the causes and ultimately the amelioration of these biases. Further, initialized seasonal hindcasts can profitably be used in the development of high-resolution coupled ocean-atmosphere models.

54 ENVIRONMENTAL SCIENCES↗