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At least 1,297 records · Page 72

Infrared Scattering Scanning Near-Field Optical Microscopy Using An External Cavity Quantum Cascade Laser For Nanoscale Chemical Imaging And Spectroscopy of Explosive Residues

Infrared scattering scanning near-field optical microscopy (s-SNOM) is an apertureless superfocusing technique that uses the antenna properties of a conducting atomic force microscope (AFM) tip to achieve infrared spatial resolution below the diffraction limit. The instrument can be used either in imaging mode, where a fixed wavelength light source is tuned to a molecular resonance and the AFM raster scans an image, or in spectroscopy mode where the AFM is held stationary over a feature of interest and the light frequency is varied to obtain a spectrum. In either case, a strong, stable, coherent infrared source is required. Here we demonstrate the integration of a broadly tunable external cavity quantum cascade laser (ECQCL) into an s-SNOM and use it to obtain infrared spectra of microcrystals of chemicals adsorbed onto gold substrates. Residues of the explosive compound tetryl was deposited onto gold substrates. s-SNOM experiments were performed in the 1260-1400 cm-1 tuning range of the ECQCL, corresponding to the NO2 symmetric stretch vibrational fingerprint region. Vibrational infrared spectra were collected on individual chemical domains with a collection area of *500nm2 and compared to ensemble averaged far-field reflection-absorption infrared spectroscopy (RAIRS) results.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

SU-E-T-327: Dosimetric Impact of Beam Energy for Intrabeam Breast IORT with Different Residual Cancer Cell Distributions After Surgery

Purpose: The purpose of this study was to evaluate the dosimetric impact of beam energy to the IORT treatment of residual cancer cells with different cancer cell distributions after breast-conserving surgery. Methods: The three dimensional (3D) radiation doses of IORT using a 4-cm spherical applicator at the energy of 40 keV and 50 keV were separately calculated at different depths of the postsurgical tumor bed. The modified linear quadratic model (MLQ) was used to estimate the radiobiological response of the tumor cells assuming different radio-sensitivities and density distributions. The impact of radiation was evaluated for two types of breast cancer cell lines (α /β=10, and α /β =3.8) at 20 Gy dose prescribed at the applicator surface. Cancer cell distributions in the postsurgical tissue field were assumed to be a Gaussian with the standard deviations of 0.5, 1 and 2 mm respectively, namely the cancer cell infiltrations of 1.5, 3, and 6 mm respectively. The surface cancer cell percentage was assumed to be 0.01%, 0.1%, 1% and 10% separately. The equivalent uniform doses (EUD) for all the scenarios were calculated. Results: The EUDs were found to be dependent on the distributions of cancer cells, but independent of the cancer cell radio-sensitivities and the density at the surface. EUDs of 50 keV are 1% larger than that of 40 keV. For a prescription dose of 20 Gy, EUDs of 50 keV beam are 17.52, 16.21 and 13.14 Gy respectively for 0.5, 1.0 and 2.0 mm of the standard deviation of cancer cell Gaussian distributions. Conclusion: The impact by selected energies of IORT beams is very minimal. When energy is changed from 50 keV to 40 keV, the EUDs are almost the same for the same cancer cell distribution. 40 keV can be safely used as an alternative of 50 keV beam in IORT.

60 APPLIED LIFE SCIENCES↗

SU-F-J-80: Deformable Image Registration for Residual Organ Motion Estimation in Respiratory Gated Treatments with Scanned Carbon Ion Beams

Purpose: At the Centro Nazionale di Adroterapia Oncologica (CNAO, Pavia, Italy) C-ions respiratory gated treatments of patients with abdominal tumours started in 2014. In these cases, the therapeutic dose is delivered around end-exhale. We propose the use of a respiratory motion model to evaluate residual tumour motion. Such a model requires motion fields obtained from deformable image registration (DIR) between 4DCT phases, estimating anatomical motion through interpolation. The aim of this work is to identify the optimal DIR technique to be integrated in the modeling pipeline. Methods: We used 4DCT datasets from 4 patients to test 4 DIR algorithms: Bspline, demons, log-domain and symmetric log domain diffeomorphic demons. We evaluate DIR performance in terms of registration accuracy (RMSE between registered images) and anatomical consistency of the motion field (Jacobian) when registering end-inhale to end-exhale. We subsequently employed the model to estimate the tumour trajectory within the ideal gating window. Results: Within the liver contour, the RMSE is in the range 31–46 HU for the best performing algorithm (Bspline) and 43–145 HU for the worst one (demons). The Jacobians featured zero negative voxels (which indicate singularities in the motion field) for the Bspline fields in 3 of 4 patients, whereas diffeomorphic demons fields showed a non-null number of negative voxels in every case. GTV motion in the gating window measured less than 7 mm for every patient, displaying a predominant superior-inferior (SI) component. Conclusion: The Bspline algorithm allows for acceptable DIR results in the abdominal region, exhibiting the property of anatomical consistency of the computed field. Computed trajectories are in agreement with clinical expectations (small and prevalent SI displacements), since patients lie wearing semi-rigid immobilizing masks. In future, the model could be used for retrospective estimation of organ motion during treatment, as guided by the breathing surrogate signal.

60 APPLIED LIFE SCIENCES↗

A Novel Mode of Photoprotection Mediated by a Cysteine Residue in the Chlorophyll Protein IsiA

Oxygenic photosynthetic organisms have evolved a multitude of mechanisms for protection against high-light stress. IsiA, a chlorophyll a-binding cyanobacterial protein, serves as an accessory antenna complex for photosystem I. Intriguingly, IsiA can also function as an independent pigment protein complex in the thylakoid membrane and facilitate the dissipation of excess energy, providing photoprotection. The molecular basis of the IsiA-mediated excitation quenching mechanism remains poorly understood. In this study, we demonstrate that IsiA uses a novel cysteine-mediated process to quench excitation energy. The single cysteine in IsiA in the cyanobacterium Synechocystis sp. strain PCC 6803 was converted to a valine. Ultrafast fluorescence spectroscopic analysis showed that this single change abolishes the excitation energy quenching ability of IsiA, thus providing direct evidence of the crucial role of this cysteine residue in energy dissipation from excited chlorophylls. Under stress conditions, the mutant cells exhibited enhanced light sensitivity, indicating that the cysteine-mediated quenching process is critically important for photoprotection.

59 BASIC BIOLOGICAL SCIENCES↗

On-line spectrophotometric method for monitoring weak residual absorption of CaMoO{sub 4} single crystals near the intrinsic luminescence peak

The optical and spectral characteristics of isotopically enriched Czochralski-grown {sup 40}Ca{sup 100}MoO{sub 4} single crystals have been investigated. This material is promising for detecting double neutrinoless {beta} decay. The possibility and the technique of spectrophotometric monitoring of weak residual absorption near the intrinsic luminescence peak of this scintillation material, which is designed for developing new-generation detectors of elementary particles, are considered.

36 MATERIALS SCIENCE↗

Electroconvection in the presence of autonomous unipolar injection and residual conductivity

The problem of the finite-amplitude electroconvection of a nonuniformly heated fluid filling a horizontal capacitor in the presence of the autonomous unipolar injection of a charge from an anode has been solved. In addition to the injected charge in a carrier fluid, the presence of proper ions (appearing owing to dissociation) ensuring the low residual conductivity of the fluid is assumed. The effect of the ratio of proper and injected ions, as well as the heating degree, on the thresholds of monotonic and oscillating electroconvection has been analyzed. The bifurcation diagrams of the solutions have been plotted for the cases of the heating of a layer from below and above. The electroconvection modes of the nonuniformly heated liquid that appear because of forward and backward bifurcations have been revealed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Comparative analysis of cross sections of residual nuclei on separated tin isotopes at a beam energy of protons and deuterons 3.65 GeV/nucleon

The cross sections of residual nuclei in the separated tin isotopes ({sup 112}Sn, {sup 118}Sn, {sup 120}Sn, and {sup 124}Sn), irradiated with proton and deuteron beams with energy 3.65 GeV/nucleon, are investigated. Parametrization by ten parametric semi-empirical formula was conducted with the aim of determining the total cross sections and analyzing the measurement results. The dependence of total inelastic cross sections on the mass number of the target and the structure of the incoming particle was investigated via the comparison of the obtained data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Residual-Photoconductivity Spectra in HgTe/CdHgTe Quantum-Well Heterostructures

Residual-photoconductivity spectra (RPS) are studied for HgTe/CdHgTe quantum-well heterostructures of n- and p-type conduction at T = 4.2 K. RPS is shown to be both positive (an increase in the carrier concentration in the quantum well) and negative depending on the illumination wavelength. The RPS maxima in the sample with n-type conduction in general correspond to the RPS minima in the p-type samples and vice versa. It is found for p-type samples that illumination at specific wavelengths leads to the “freezing” of free carriers in the quantum well (QW) but not to a change in the conduction type. This fact indicates the important role of the built-in electric field in the RPS mechanism; this field is “switched-off” upon QW neutralization.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

On the Size Effect for Neutron Diffraction by Two-Phase Structures and Applicability of Composite Standards in Analysis of Residual Austenite in Steels

The possibility of using neutron diffraction in quantitative analysis of residual austenite in steels is investigated. According to the obtained results, some properties of neutron diffraction by two-phase structures remain size-independent, which makes it possible to use large composite standards. It is shown that this approach ensures admissible accuracy without using a priori coefficients.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Generalized Preconditioned Locally Harmonic Residual Eigensolver (GPLHR) v0.1

The software contains a MATLAB implementation of the Generalized Preconditioned Locally Harmonic Residual (GPLHR) method for solving standard and generalized non-Hermitian eigenproblems. The method is particularly useful for computing a subset of eigenvalues, and their eigen- or Schur vectors, closest to a given shift. The proposed method is based on block iterations and can take advantage of a preconditioner if it is available. It does not need to perform exact shift-and-invert transformation. Standard and generalized eigenproblems are handled in a unified framework.

Vecharynski, Eugene↗

Prognostic residual mean flow in an ocean general circulation model and its relation to prognostic Eulerian mean flow

Recent work has shown that taking the thickness-weighted average (TWA) of the Boussinesq equations in buoyancy coordinates results in exact equations governing the prognostic residual mean flow where eddy–mean flow interactions appear in the horizontal momentum equations as the divergence of the Eliassen–Palm flux tensor (EPFT). It has been proposed that, given the mathematical tractability of the TWA equations, the physical interpretation of the EPFT, and its relation to potential vorticity fluxes, the TWA is an appropriate framework for modeling ocean circulation with parameterized eddies. The authors test the feasibility of this proposition and investigate the connections between the TWA framework and the conventional framework used in models, where Eulerian mean flow prognostic variables are solved for. Using the TWA framework as a starting point, this study explores the well-known connections between vertical transfer of horizontal momentum by eddy form drag and eddy overturning by the bolus velocity, used by Greatbatch and Lamb and Gent and McWilliams to parameterize eddies. After implementing the TWA framework in an ocean general circulation model, we verify our analysis by comparing the flows in an idealized Southern Ocean configuration simulated using the TWA and conventional frameworks with the same mesoscale eddy parameterization.

54 ENVIRONMENTAL SCIENCES↗

Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins

Many bacteria and certain eukaryotes utilize multi-step His-to-Asp phosphorelays for adaptive responses to their extracellular environments. Histidine phosphotransfer (HPt) proteins function as key components of these pathways. HPt proteins are genetically diverse, but share a common tertiary fold with conserved residues near the active site. A surface-exposed glycine at the H + 4 position relative to the phosphorylatable histidine is found in a significant number of annotated HPt protein sequences. Furthermore previous reports demonstrated that substitutions at this position result in diminished phosphotransfer activity between HPt proteins and their cognate signaling partners.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mouse IgG2c Fc loop residues promote greater receptor-binding affinity than mouse IgG2b or human IgG1

The structures of non-human antibodies are largely unstudied despite the potential for the identification of alternative structural motifs and physical properties that will benefit a basic understanding of protein and immune system evolution as well as highlight unexplored motifs to improve therapeutic monoclonal antibody. Here we probe the structure and receptor-binding properties of the mouse IgG2c crystallizable fragment (Fc) to compare to mouse IgG2b and human IgG1 Fcs. Models of mIgG2c Fc determined by x-ray crystallography with a complex-type biantennary (to 2.05 Å) or a truncated (1)GlcNAc asparagine-linked (N)-glycan attached (to 2.04 Å) show differences in key regions related to mouse Fc γ receptor IV (mFcγRIV) binding. Mouse IgG2c forms different non-bonded interactions between the BC, DE and FG loops than the highly-conserved mIgG2b and binds to FcγRIV with 4.7-fold greater affinity in the complex-type glycoform. Secondary structural elements surrounding the Asn297 site of glycosylation form longer beta strands in the truncated mIgG2c Fc glycoform when compared to mIgG2c with the complex-type N-glycan. Solution NMR spectroscopy of the N-linked (1)GlcNAc residues show differences between mIgG2b, 2c and hIgG1 Fc that correlate to receptor binding affinity. Mutations targeting differences in mIgG2 DE and FG loops decreased affinity of mIgG2c for FcγRIV and increased affinity of mIgG2b. Changes in NMR spectra of the mutant Fc proteins mirrored these changes in affinity. Our studies identified structural and functional differences in highly conserved molecules that were not predicted from primary sequence comparison.

59 BASIC BIOLOGICAL SCIENCES↗

Eliminating Signal Bias Caused by Vacuum System Backstreaming in the Diagnostic Residual Gas Analyzer of ITER

In fusion neutral gas analysis, such as with the Diagnostic Residual Gas Analyzer (DRGA) for ITER, the primary measurement range of interest comprises the low-amu species (1 to 6), especially deuterium and helium. The challenge in successfully obtaining accurate measurements is two-fold. First, the sensitivity of the method must be sufficient to resolve trace amounts accurately; typically, one percent or less. Second, the gas signal from the fusion processes must be free of bias caused by the latent presence (from system outgassing and/or vacuum backstreaming) of these gases to enable accurate interpretation of the measured signal. This latter criterion can be problematic for the lightest gases since there is a propensity for some fraction of the pumped gas load to undergo a phenomenon known as backstreaming. This behavior is manifested in pumping systems for gas properties related to relative atomic weight (lightest) and size (smallest). Backstreaming results in a significant amount of the pumped gas undertaking a reverse flow and re-entering the measurement region; thus, contaminating the forward, real-time measurement. To fully eliminate this adverse effect, a conductance-limiting device – or orifice – has been installed in the high-vacuum pumping system of the present ITER DRGA prototype. The system was already equipped with a secondary turbomolecular pump (TMP), but with limited effectiveness against backstreaming in the inter-pump volume (IPV). This orifice is placed within the suction inlet coupling of the secondary TMP, which is downstream of the IPV. Its objective is to eliminate the backstreaming phenomenon by increasing the back pressure in the IPV. However, the orifice sizing must take into consideration other factors, such as the diagnostic measurement objectives. For example, in the ITER DRGA, one of the measurement requirements is a dynamic response time of ~1s. Fortunately, an added benefit of the pumping restriction created by the orifice is that the upstream pressure increase is beneficial for the DRGA’s optical gas analysis (OGA) sensors. These sensors are attached to the IPV in the present design. The glow discharges, when used as an OGA light source, will typically have a brighter light emission with increasing plasma cell pressure. In addition to the fusion machine research sector, there are other potential applications of this pumping technique where the monitoring of lighter gas concentrations is essential, such as the photolithography process for the semiconductor fabrication of integrated circuits. This presentation will describe the vacuum system used to demonstrate a process to eliminate backstreaming as well as show test results to verify the accomplishment of this critical objective.

Marcus, Chris↗

Investigation of High-temperature Oxidation Kinetics and Residual Ductility of Oxidized Samples of Sponge-based E110 Alloy Cladding Tubes

Two-sided oxidation experiments were recently conducted at 1000-1200°C in flowing steam with samples of sponge-based Zr-1Nb alloy E110. Although the old electrolytic E110 tubing exhibited a high degree of susceptibility to nodular corrosion and experienced breakaway oxidation rates in relatively short time, the new sponge-based E110 has demonstrated steam oxidation behavior comparable to Zircaloy-4. The sponge-based E110 followed the parabolic law, and the derived oxidation rate constant is in good agreement with the Cathcart-Pawel (CP) correlation at 1100-1200°C. For 1000°C oxidation, the weight-gain of sponge-based E110 is much lower than Zircaloy-4. No breakaway oxidation was observed at 1000°C up to 8000 s. Ring compression tests were conducted to evaluate the residual ductility of oxidized samples at room temperature and at 135°C. All sponge-based E110 specimens were still ductile at 135°C after being oxidized up to 20% equivalent cladding reacted at 1000-1200°C. Metallographic examinations were performed on oxidized E110 specimens to correlate material performance with microstructure.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Impact of Solenoid Induced Residual Magnetic Fields on The Prototype SSR1 CM Performance

A prototype cryomodule containing eight Single Spoke Resonators type-1 (SSR1) operating at 325 MHz and four superconducting focusing lenses was successfully assembled, cold tested, and accelerated beam in the framework of the PIP-II project at Fermilab. The impact of induced residual magnetic fields from the solenoids on performance of cavities is presented in this contribution. In addition, design optimizations for the production cryomodules as a result of this impact are highlighted.

43 PARTICLE ACCELERATORS↗