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At least 1,297 records · Page 72

TH-CD-207A-03: A Surface Deformation Driven Respiratory Model for Organ Motion Tracking in Lung Cancer Radiotherapy

Purpose: To propose and validate a novel real-time surface-mesh-based internal organ-external surface motion and deformation tracking method for lung cancer radiotherapy. Methods: Deformation vector fields (DVFs) which characterizes the internal and external motion are obtained by registering the internal organ and tumor contours and external surface meshes to a reference phase in the 4D CT images using a recent developed local topology preserved non-rigid point matching algorithm (TOP). A composite matrix is constructed by combing the estimated internal and external DVFs. Principle component analysis (PCA) is then applied on the composite matrix to extract principal motion characteristics and finally yield the respiratory motion model parameters which correlates the internal and external motion and deformation. The accuracy of the respiratory motion model is evaluated using a 4D NURBS-based cardiac-torso (NCAT) synthetic phantom and three lung cancer cases. The center of mass (COM) difference is used to measure the tumor motion tracking accuracy, and the Dice’s coefficient (DC), percent error (PE) and Housdourf’s distance (HD) are used to measure the agreement between the predicted and ground truth tumor shape. Results: The mean COM is 0.84±0.49mm and 0.50±0.47mm for the phantom and patient data respectively. The mean DC, PE and HD are 0.93±0.01, 0.13±0.03 and 1.24±0.34 voxels for the phantom, and 0.91±0.04, 0.17±0.07 and 3.93±2.12 voxels for the three lung cancer patients, respectively. Conclusions: We have proposed and validate a real-time surface-mesh-based organ motion and deformation tracking method with an internal-external motion modeling. The preliminary results conducted on a synthetic 4D NCAT phantom and 4D CT images from three lung cancer cases show that the proposed method is reliable and accurate in tracking both the tumor motion trajectory and deformation, which can serve as a potential tool for real-time organ motion and deformation monitoring in lung cancer radiotherapy. This work is supported in part by grant from VARIAN MEDICAL SYSTEMS INC, the National Natural Science Foundation of China (no 81428019 and no 81301940), the Guangdong Natural Science Foundation (2015A030313302)and the 2015 Pearl River S&T Nova Program of Guangzhou (201506010096).

60 APPLIED LIFE SCIENCES↗

TH-CD-206-08: An Anthropopathic Deformable Phantom for Geometric and Dose Accumulation Accuracy Validation of Deformable Image Registration

Purpose: To design and construct a three-dimensional (3D) anthropopathic abdominal phantom for evaluating deformable image registration (DIR) accuracy on images and dose deformation in adaptive radiation therapy (ART). Method: Organ moulds, including liver, kidney, spleen, stomach, vertebra and two metastasis tumors, are 3D printed using the contours from an ovarian cancer patient. The organ moulds are molded with deformable gels that made of different mixtures of polyvinyl chloride (PVC) and the softener dioctyl terephthalate. Gels with different densities are obtained by a polynomial fitting curve which describes the relation between the CT number and PVC-softener blending ratio. The rigid vertebras are constructed by moulding with white cement. The final abdominal phantom is assembled by arranging all the fabricated organs inside a hollow dummy according to their anatomies and sealed with deformable gel with averaged CT number of muscle and fat. Geometric and dosimetric landmarks are embedded inside the phantom for spatial accuracy and dose accumulation accuracy studies. Three DIR algorithms available in the open source DIR toolkit-DIRART, including the Demons, the Horn-Schunck and Lucas-Kanade method and the Level-Set Motion method, are tested using the constructed phantom. Results: Viscoelastic behavior is observed in the constructed deformable gel, which serves as an ideal material for the deformable phantom. The constructed abdominal phantom consists of highly realistic anatomy and the fabricated organs inside have close CT number to its reference patient. DIR accuracy studies conducted on the constructed phantom using three DIR approaches indicate that geometric accuracy of a DIR algorithm has achieved does not guarantee accuracy in dose accumulation. Conclusions: We have designed and constructed an anthropopathic abdominal deformable phantom with satisfactory elastic property, realistic organ density and anatomy. This physical phantom is recyclable and can be used for routine validations of DIR geometric accuracy and dose accumulation accuracy in ART. This work is supported in part by grant from VARIAN MEDICAL SYSTEMS INC, the National Natural Science Foundation of China (no 81428019 and no 81301940), the Guangdong Natural Science Foundation (2015A030313302) and the 2015 Pearl River S&T Nova Program of Guangzhou (201506010096).

60 APPLIED LIFE SCIENCES↗

Beasts in Lambda-CDM zoo

Recent astronomical discoveries of supermassive black holes (quasars), gamma-bursters, super-novae, and dust at high redshifts, z = (5−10), are reviewed. Such a dense population of the early universe is at odds with the conventional mechanisms of its possible origin. Similar data from the contemporary universe, which are also in conflict with natural expectations, are considered too. Two possible mechanisms are suggested, at least one of which can potentially solve all these problems. As a by-product of the last model, an abundant cosmological antimatter may be created.

79 ASTRONOMY AND ASTROPHYSICS↗

Crystal-structure analysis of four mineral samples of anhydrite, CaSO[subscript 4], using synchrotron high-resolution powder X-ray diffraction data

The crystal structures of four samples of anhydrite, CaSO{sub 4}, were obtained by Rietveld refinements using synchrotron high-resolution powder X-ray diffraction (HRPXRD) data and space group Amma. As an example, for one sample of anhydrite from Hants County, Nova Scotia, the unit-cell parameters are a = 7.00032(2), b = 6.99234(1), c = 6.24097(1) {angstrom}, and V = 305.487(1) {angstrom}{sup 3} with a > b. The eight-coordinated Ca atom has an average <Ca-O> distance of 2.4667(4) {angstrom}. The tetrahedral SO{sub 4} group has two independent S-O distances of 1.484(1) to O1 and 1.478(1) {angstrom} to O2 and an average <S-O> distance of 1.4810(5) {angstrom}. The three independent O-S-O angles [108.99(8) x 1, 110.38(3) x 4, 106.34(9){sup o} x 1; average <O-S-O> [6] = 109.47(2){sup o}] and S-O distances indicate that the geometry of the SO{sub 4} group is quite distorted in anhydrite. The four anhydrite samples have structural trends where the a, b, and c unit-cell parameters increase linearly with increasing unit-cell volume, V, and their average <Ca-O> and <S-O> distances are nearly constant. The grand mean <Ca-O> = 2.4660(2) {angstrom}, and grand mean <S-O> = 1.4848(3) {angstrom}, the latter is longer than 1.480(1) {angstrom} in celestite, SrSO{sub 4}, as expected.

58 GEOSCIENCES↗

NuFast-LBL

NuFast is designed to calculate all nine neutrino oscillation probabilities in matter for long-baseline accelerator (e.g. NOvA, T2K, DUNE, HK) and reactor experiments (e.g. JUNO) very quickly, using the algorithms optimized for realistic oscillation scenarios. NuFast is provided in Fortran, C++, and Python, although no particular guarantees are made that the Python code is "fast".

Denton, PeterB. [Brookhaven National Laboratory (B↗

C-FOG: Life of Coastal Fog

C-FOG is a comprehensive bi-national project dealing with the formation, persistence, and dissipation (life cycle) of fog in coastal areas (coastal fog) controlled by land, marine, and atmospheric processes. Given its inherent complexity, coastal-fog literature has mainly focused on case studies, and there is a continuing need for research that integrates across processes (e.g., air–sea–land interactions, environmental flow, aerosol transport, and chemistry), dynamics (two-phase flow and turbulence), microphysics (nucleation, droplet characterization), and thermodynamics (heat transfer and phase changes) through field observations and modeling. Central to C-FOG was a field campaign in eastern Canada from 1 September to 8 October 2018, covering four land sites in Newfoundland and Nova Scotia and an adjacent coastal strip transected by the Research Vessel Hugh R. Sharp . An array of in situ, path-integrating, and remote sensing instruments gathered data across a swath of space–time scales relevant to fog life cycle. Satellite and reanalysis products, routine meteorological observations, numerical weather prediction model (WRF and COAMPS) outputs, large-eddy simulations, and phenomenological modeling underpin the interpretation of field observations in a multiscale and multiplatform framework that helps identify and remedy numerical model deficiencies. An overview of the C-FOG field campaign and some preliminary analysis/findings are presented in this paper.

58 GEOSCIENCES↗

The dividends of investing in computational software design: A case study

A significant fraction of computational software for scientific research grows through accretion. In a common scenario, a small group develops a code for a specific purpose. Others find the software useful, so they add to it for their own use. The software grows to the point where its management becomes intractable and scientific results obtained from it become unreliable. This is in stark contrast with a small number of scientific codes that have undergone a design process, be it due to an upfront investment, or when haphazardly grown codes have reset and started again. At a minimum, these codes reduce the time to obtain research results for the communities they serve because individual researchers do not have to develop their own codes. They provide further benefits; the results they produce are more reproducible due to greater scrutiny, leading to better science. One of the more overlooked benefits, which is perhaps of greater significance, is that a well-designed code can expand to serve communities beyond the ones it was designed for. Thus, research communities with similar computational requirements can symbiotically improve computation-based research for each other. In this article, we present a case study of FLASH, a code that was designed and developed for simulating thermonuclear runaways such as novae and type Ia supernovae in astrophysics. Designed to be modular and extensible, users from several diverse research areas have added capabilities to it and adapted it for their own communities. Examples include cosmology, high-energy density physics, core-collapse supernovae, star formation, fluid–structure interactions, and chemical combustion. We give a summary of design features that facilitated the expansion and quantify the effort needed to expand into some of the above-mentioned fields. We also quantify the impact on different communities by mining the database of publications using FLASH, collected by its developers.

97 MATHEMATICS AND COMPUTING↗

CROCUS Tipping Bucket Rain Gauge Data at Argonne National Laboratory Prairie Site

The Tipping Bucket Rain Gauge (TBRG) dataset contains data from both the Nova-Lynx 12 inch TBRG and the Met One 8-inch TBRG. The dataset contains one minute measurements for precipitation accumulation measured in that timeframe from both instruments. Each TBRG was equipped with heaters for all-season measurements. These data are helpful for identifying periods of drought, potential flooding, and general input for water budgets. TBRGs can be used to validate optical rain gauge data and disdrometer data collected during the CROCUS project. Data were collected at the Argonne Testbed for Multiscale Observational Science (ATMOS), a 20-acre prairie site at Argonne National Laboratory in Lemont, Illinois. The data is presented as daily NetCDF (.nc) files, each containing approximately 24 hours of observations. Files follow the naming convention of: the project (CROCUS), location (atmos), instrument name (tbrg), data level (raw, a1), and date (year, month, day). The NetCDF format can be accessed using common scientific software such as Python using xarray, netCDF4 or act-doe.

1-min Precipitation Accumulation↗

AmeriFlux CA-AF1 Acadia Research Forest

This is the AmeriFlux version of the carbon flux data for the site CA-AF1 Acadia Research Forest. Site Description - The site is located in the Acadia Research Forest (managed by the Canadian Forest Service). The research forest is representative of the Acadian Forest Region in New Brunswick and Nova Scotia and comprises of mixed forest containing softwood, hardwood, and mixed-wood stands. The forest is managed and features different forest composition depending on management history.

Helbig, Manuel [Dalhousie University]↗

High Intensity Proton Stacking at Fermilab: 700 kW Running

As part of the Nova upgrades in 2012, the Recycler was repurposed as proton stacker for the Main Injector with the aim to deliver 700 kW. Since January 2017, this design power has been run routinely. The steps taken to commission the Recycler and run at 700 kW operationally will be discussed as well as plans for future running.

43 PARTICLE ACCELERATORS↗

Simulations of High Current NuMI Magnetic Horn Striplines at FNAL

Both the NuMI (Neutrinos and the Main Injector) beam line, that has been providing intense neutrino beams for several Fermilab experiments (MINOS, MINERVA, NOVA), and the newly proposed LBNF (Long Baseline Neutrino Facility) beam line which plans to produce the highest power neutrino beam in the world for DUNE (the Deep Underground Neutrino Experiment) need pulsed magnetic horns to focus the mesons which decay to produce the neutrinos. The high-current horn and stripline design has been evolving as NuMI reconfigures for higher beam power and to meet the needs of the LBNF design. The CSU particle accelerator group has aided the neutrino physics experiments at Fermilab by producing EM simulations of magnetic horns and the required high-current striplines. In this paper, we present calculations, using the Poisson and ANSYS Maxwell 3D codes, of the EM interaction of the stripline plates of the NuMI horns at critical stress points. In addition, we give the electrical simulation results using the ANSYS Electric code. These results are being used to support the development of evolving horn stripline designs to handle increased electrical current and higher beam power for NuMI upgrades and for LBNF

43 PARTICLE ACCELERATORS↗

NuMI Beam Muon Monitor Data Analysis and Simulation for Improved Beam Monitoring

The NuMI muon monitors (MMs) are a very important diagnostic tool for monitoring the stability of the neutrino beam used by the NOvA experiment at Fermilab. The goal of our study is to maintain the quality of the MM signal and to establish the correlations between the neutrino and muon beam profile. This study could also inform the LBNF decision on the beam diagnostic tools. We report on the progress of beam scan data analysis (beam position, spot size, and magnetic horn current scan) and comparison with the simulation outcomes.

43 PARTICLE ACCELERATORS↗

A study of algal biomass potential in selected Canadian regions.

A dynamic assessment model has been developed for evaluating the potential algal biomass and extracted biocrude productivity and costs, using nutrient and water resources available from waste streams in four regions of Canada (western British Columbia, Alberta oil fields, southern Ontario, and Nova Scotia). The purpose of this model is to help identify optimal locations in Canada for algae cultivation and biofuel production. The model uses spatially referenced data across the four regions for nitrogen and phosphorous loads in municipal wastewaters, and CO{sub 2} in exhaust streams from a variety of large industrial sources. Other data inputs include land cover, and solar insolation. Model users can develop estimates of resource potential by manipulating model assumptions in a graphic user interface, and updated results are viewed in real time. Resource potential by location can be viewed in terms of biomass production potential, potential CO{sub 2} fixed, biocrude production potential, and area required. The cost of producing algal biomass can be estimated using an approximation of the distance to move CO{sub 2} and water to the desired land parcel and an estimation of capital and operating costs for a theoretical open pond facility. Preliminary results suggest that in most cases, the CO{sub 2} resource is plentiful compared to other necessary nutrients (especially nitrogen), and that siting and prospects for successful large-scale algae cultivation efforts in Canada will be driven by availability of those other nutrients and the efficiency with which they can be used and re-used. Cost curves based on optimal possible siting of an open pond system are shown. The cost of energy for maintaining optimal growth temperatures is not considered in this effort, and additional research in this area, which has not been well studied at these latitudes, will be important in refining the costs of algal biomass production. The model will be used by NRC-IMB Canada to identify promising locations for both demonstration and pilot-scale algal cultivation projects, including the production potential of using wastewater, and potential land use considerations.

02 PETROLEUM↗

Tangential 2-D Edge Imaging for GPI and Edge/Impurity Modeling

Nova Photonics, Inc. has a collaborative effort at the National Spherical Torus Experiment (NSTX). This collaboration, based on fast imaging of visible phenomena, has provided key insights on edge turbulence, intermittency, and edge phenomena such as edge localized modes (ELMs) and multi-faceted axisymmetric radiation from the edge (MARFE). Studies have been performed in all these areas. The edge turbulence/intermittency studies make use of the Gas Puff Imaging diagnostic developed by the Principal Investigator (Ricardo Maqueda) together with colleagues from PPPL. This effort is part of the International Tokamak Physics Activity (ITPA) edge, scrape-off layer and divertor group joint activity (DSOL-15: Inter-machine comparison of blob characteristics). The edge turbulence/blob study has been extended from the current location near the midplane of the device to the lower divertor region of NSTX. The goal of this effort was to study turbulence born blobs in the vicinity of the X-point region and their circuit closure on divertor sheaths or high density regions in the divertor. In the area of ELMs and MARFEs we have studied and characterized the mode structure and evolution of the ELM types observed in NSTX, as well as the study of the observed interaction between MARFEs and ELMs. This interaction could have substantial implications for future devices where radiative divertor regions are required to maintain detachment from the divertor plasma facing components.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

High Energy Physics at Tufts University Final Report

In this Final Report, we the researchers of the high energy physics group at Tufts University summarize our works and achievements in three frontier areas of elementary particle physics: (i) Neutrino physics at the Intensity Frontier, (ii) Collider physics at the Energy Frontier, and (iii) Theory investigations of spin structure and quark-gluon dynamics of nucleons using quantum chromodynamics. With our Neutrino research we completed, or else brought to a useful state, the following: Data-taking, physics simulations, physics analysis, physics reporting, explorations of matter effects, and detector component fabrication. We conducted our work as participants in the MINOS, NOvA, and LBNE neutrino oscillation experiments and in the MINERvA neutrino scattering experiment. With our Collider research we completed or else brought to a useful state: Data-taking, development of muon system geometry and tracking codes, software validation and maintenance, physics simulations, physics analysis, searches for new particles, and study of top-quark and B-quark systems. We conducted these activities as participants in the ATLAS proton-proton collider experiment at CERN and in the CDF proton-antiproton collider experiment at Fermilab. In our Theory research we developed QCD-based models, applications of spin phenomenology to fundamental systems, fitting of models to data, presenting and reporting of new concepts and formalisms. The overarching objectives of our research work have always been: 1) to test and clarify the predictions of the Standard Model of elementary particle physics, and 2) to discover new phenomena which may point the way to a more unified theoretical framework.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

1.5D Quasilinear Model for Alpha Particle-TAE Interaction in ARIES ACT-I

We study the TAE interaction with alpha particle fusion products in ARIES ACT-I using the 1.5D quasilinear model. 1.5D uses linear analytic expressions for growth and damping rates of TAE modes evaluated using TRANSP profiles to calculates the relaxation of pressure profiles. NOVA-K simulations are conducted to validate the analytic dependencies of the rates, and to normalize their absolute value. The low dimensionality of the model permits calculating loss diagrams in large parameter spaces.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Properties of Alfvén Eigenmodes in the TAE range on the National Spherical Torus Experiment-Upgrade

A second Neutral Beam (NB) injection line is being installed on the NSTX Upgrade device, resulting in six NB sources with different tangency radii that will be available for heating and current drive. This work explores the properties of instabilities in the frequency range of the Toroidal Alfvén Eigenmode (TAE) for NSTX-U scenarios with various NB injection geometries, from more perpendicular to more tangential, and with increased toroidal magnetic field with respect to previous NSTX scenarios. Predictions are based on analysis through the ideal MHD code NOVA-K. For the scenarios considered in this work, modifications of the Alfvén continuum result in a frequency up-shift and a broadening of the radial mode structure. The latter effect may have consequences for fast ion transport and loss. Preliminary stability considerations indicate that TAEs are potentially unstable, with ion Landau damping representing the dominant damping mechanism.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Accelerator/Experiment Operations - FY 2013

The low-energy and high-energy neutrino beams, the SeaQuest beam, and the Test Beam in the Meson area were shutoff on May 1, 2012 to begin work on the accelerator upgrades for NOvA (ANU), and for overall accelerator system maintenance. The shutdown of the Main Injector ended July 30, 2013, with the startup of the Accelerator systems for commissioning. Vacuum issues in the Main Injector delayed Commissioning and neutrino running until September.

Dixon, R.↗