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At least 1,297 records · Page 72

CROCUS Air Quality Data at Chicago State University Prairie Site

The Air Quality Transmitter (AQT) (Vaisala AQT530) instrument provides observations on meteorological conditions, including particulate matter (PM2.5, PM10), gas species concentrations (Nitric Oxide (NO), Nitrogen Dioxide (NO2), Ozone (O3)), and environment temperature and moisture. These measurements are critical for understanding air quality. These measurements are useful for understanding changes in aerosol properties, air quality research, and comparing to model experiments especially in urban environments.This dataset is from the Department of Energy Office of Science funded project, Community Research on Urban and Climate Science (CROCUS) (https://crocus-urban.org/). Datasets are stored in the netCDF data format, and we we encourage users to make use the associated toolkits available from Unidata (https://www.unidata.ucar.edu/software/netcdf/), Project Pythia (https://foundations.projectpythia.org/core/data-formats/netcdf-cf.html), and our “Instrument Cookbooks” (https://crocus-urban.github.io/instrument-cookbooks) for more information on how to process the metadata-rich datasets.

54 ENVIRONMENTAL SCIENCES↗

CROCUS Low Cost All-in-One Weather Station AMB-002 Data Argonne National Laboratory Prairie Site

The Ambient Weather WS-2902D (AMB) is a low cost weather station that has become very useful for filling data gaps in harder to deploy locations. These low cost weather stations collect 13 second data, which is averaged to a five minute data output available to users through an API key. The data files contain measurements for precipitation, temperature, wind chill/heat index, relative humidity, dew point, UV index, solar radiation, wind speed, wind direction, wind gust, and with an external particulate matter 2.5 (PM 2.5) sensor. Having all of these measurements in one condense system allows for fast deploying and dense network capabilities. Three of the AMB weather stations were deployed at the Argonne Testbed for Multiscale Observational Science (ATMOS), a 20-acre prairie site at Argonne National Laboratory in Lemont, Illinois. The instruments are denoted by their three digit identifier (CMS-AMB-xxx) format. The data is presented as daily NetCDF (.nc) files, each containing approximately 24 hours of observations. Files follow the naming convention of: the project (CROCUS), location (atmos), instrument name (CMS-AMB-002), data level (raw, a1), and date (year, month, day). The NetCDF format can be accessed using common scientific software such as Python using xarray, netCDF4 or ACT-DOE.

54 ENVIRONMENTAL SCIENCES↗

High Performance Input/Output for Parallel Computer Systems

The goal of our project is to study the I/O characteristics of parallel applications used in Earth Science data processing systems such as Regional Data Centers (RDCs) or EOSDIS. Our approach is to study the runtime behavior of typical programs and the effect of key parameters of the I/O subsystem both under simulation and with direct experimentation on parallel systems. Our three year activity has focused on two items: developing a test bed that facilitates experimentation with parallel I/O, and studying representative programs from the Earth science data processing application domain. The Parallel Virtual File System (PVFS) has been developed for use on a number of platforms including the Tiger Parallel Architecture Workbench (TPAW) simulator, The Intel Paragon, a cluster of DEC Alpha workstations, and the Beowulf system (at CESDIS). PVFS provides considerable flexibility in configuring I/O in a UNIX- like environment. Access to key performance parameters facilitates experimentation. We have studied several key applications fiom levels 1,2 and 3 of the typical RDC processing scenario including instrument calibration and navigation, image classification, and numerical modeling codes. We have also considered large-scale scientific database codes used to organize image data.

Ligon, W. B.↗

Our Mission to Planet Earth: A guide to teaching Earth system science

Volcanic eruptions, hurricanes, floods, and El Nino are naturally occurring events over which humans have no control. But can human activities cause additional environmental change? Can scientists predict the global impacts of increased levels of pollutants in the atmosphere? Will the planet warm because increased levels of greenhouse gases, produced by the burning of fossil fuels, trap heat and prevent it from being radiated back into space? Will the polar ice cap melt, causing massive coastal flooding? Have humans initiated wholesale climatic change? These are difficult questions, with grave implications. Predicting global change and understanding the relationships among earth's components have increased in priority for the nation. The National Aeronautics and Space Administration (NASA), along with many other government agencies, has initiated long-term studies of earth's atmosphere, oceans, and land masses using observations from satellite, balloon, and aircraft-borne instruments. NASA calls its research program Mission to Planet Earth. Because NASA can place scientific instruments far above earth's surface, the program allows scientists to explore earth's components and their interactions on a global scale.

Source record↗

EOSDIS Petabyte Archives: Tenth Anniversary

One of the world s largest scientific data systems, NASA'S Earth Observing System Data and Information System (EOSDIS) has stored over three petabytes of earth science data in a geographically distributed mass storage system. Design for this system began in the early 1990s and included a presentation of the design of the mass storage system at this conference in 1995. Many changes have occurred in the ten years since that presentation, much of it performed while the system was operational. In its first operational year (2000), the EOSDIS system had increased NASA's collection of earth science data holdings eight-fold. Today, EOSDIS collects over 7,000 gigabytes of data per week, almost 60 times more than the Hubble Space Telescope. This load represents major challenges for ingest into the mass storage system, as well as for timely and balanced data distribution out of the mass storage system. This paper discusses the evolution of the EOSDIS focusing primarily on the mass storage system component of the archive. We present the lessons that were learned over the years and some directions that we are taking for the future.

Behnke, Jeanne↗

TRUST, Trustworthiness and EOSDIS

In recent years there has been considerable attention by the international scientific research and applications community to ensure high quality of data and information management. The terms FAIR (Findable, Accessible, Interoperable, Reusable) data, TRUST (Transparency, Responsibility, User Community, Sustainability, and Technology) principles, and CARE (Collective Benefit, Authority to Control, Responsibility, and Ethics) principles have come into vogue during the last decade. NASA has been managing data and information for over 60 years. NASA’s Earth Observing System Data and Information System (EOSDIS) has been in operation for over 25 years, managing most of NASA’s Earth science data. Trustworthiness is a goal that NASA has always strived to achieve or exceed, because it: enables the success of any NASA science mission; inspires general science research and applications; justifies the cost of operations; contributes to the value of NASA’s Open Data Policy; and influences the long term, historical view for the data collection. Given the recent growth of interest in TRUST principles, it is useful to assess and show how NASA’s attention to trustworthiness maps into those principles. This presentation addresses shows how the various steps that have been taken by the Earth Science Data and Information System (ESDIS) Project in the implementation and evolution of EOSDIS map into the TRUST principles.

Remote Sensing↗

A Multi-Frequency Wide-Swath Spaceborne Cloud and Precipitation Imaging Radar

Microwave and millimeter-wave radars have proven their effectiveness in cloud and precipitation observations. The NASA Earth Science Decadal Survey (DS) Aerosol, Cloud and Ecosystems (ACE) mission calls for a dual-frequency cloud radar (W band 94 GHz and Ka-band 35 GHz) for global measurements of cloud microphysical properties. Recently, there have been discussions of utilizing a tri-frequency (KuKaW-band) radar for a combined ACE and Global Precipitation Measurement (GPM) follow-on mission that has evolved into the Cloud and Precipitation Process Mission (CaPPM) concept. In this presentation we will give an overview of the technology development efforts at the NASA Goddard Space Flight Center (GSFC) and at Northrop Grumman Electronic Systems (NGES) through projects funded by the NASA Earth Science Technology Office (ESTO) Instrument Incubator Program (IIP). Our primary objective of this research is to advance the key enabling technologies for a tri-frequency (KuKaW-band) shared-aperture spaceborne imaging radar to provide unprecedented, simultaneous multi-frequency measurements that will enhance understanding of the effects of clouds and precipitation and their interaction on Earth climate change. Research effort has been focused on concept design and trade studies of the tri-frequency radar; investigating architectures that provide tri-band shared-aperture capability; advancing the development of the Ka band active electronically scanned array (AESA) transmitreceive (TR) module, and development of the advanced radar backend electronics.

imaging↗

Complications of Metadata Curation for NASA Airborne and Field Campaigns, Platforms, and Instruments

The Airborne Data Management Group (ADMG) curates metadata that describe NASA's airborne and field campaigns, platforms and instruments. This activity is vital to building a useful inventory of sub-orbital Earth science data that improves data discovery and access. During the curation process, many metadata issues were identified that required improvement to campaign and data product metadata. In some cases, locating the needed metadata to add to the inventory was a simple process. For other cases, the information was hard to find. In addition, identifying accurate investigation instrument details to add to the inventory was especially complicated because of the variety of definitions used in the Earth science community for the same concepts. One example of this is the concept of instruments' spatial and temporal resolution. The spatial resolution is one of the more difficult elements to curate given the variations in meaning across various disciplines. Clarified definitions are needed to enable consistency of information across campaigns and instruments. In this presentation, we introduce results from a survey of scientists from various fields in which we asked for definitions of spatial and temporal resolution. Our survey results highlight the importance of creating more universally acceptable definitions for certain metadata elements. By curating sub-orbital field campaign and instrument metadata, ADMG is enabling more efficient discovery and access to NASA observations by allowing science data users to search for certain clearly defined criteria and metadata values.

Ashlyn Shirey↗

Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces

These data are from Bandopadhyay et al., "Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces". This study aims to understand the soil microbial ecology along terrestrial-aquatic interfaces of a freshwater and estuarine region and how it relates to organic matter. We analyzed soil microbial (16S rRNA gene) and organic matter (Fourier-transform ion cyclotron resonance mass spectrometry, FTICR-MS) composition from upland (forested), transition (stressed forest), and wetland positions at three sites in each of the Lake Erie (freshwater) and Chesapeake Bay (estuarine) regions. This dataset includes 16S rRNA gene amplicon data (only processed file types included here) and organic matter composition from FTICR-MS data (raw and processed files included here) from upland (forested), transition (stressed forest), and wetland positions at three sites in each of the Lake Erie and Chesapeake Bay regions. These sites are part of the COMPASS-FME project (https://compass.pnnl.gov/FME/COMPASSFME). File formats and software needed to access files: 16S rRNA gene amplicon data: These files follow the format reported here https://ess-dive.gitbook.io/amplicon-sequencing-reporting-format#updates-in-v1.0.1. As per this format, there are four file types reported: 1. Taxon tables (also called sequence-by-sample or OTU (operational taxonomic unit)/ESV (exact sequence variant) tables) : available in a .txt file format and accessible using TextEdit or MS Excel. 2. Representative sequences (also called consensus sequences) : available in a .fasta format and accessible using TextEdit. 3. Sequencing metadata : available in a MS Excel workbook file format and CSV file format 4. Bioinformatic metadata : available in a MS Excel workbook file format and CSV file format FTICR-MS data: 1. Raw data converted to a processed file with intensities of the peaks in the given samples : available in a MS Excel CSV file format 2. Processed file used in analyses and visualizations (appended as icr_long_) : available in a MS Excel CSV file format 3. Metadata file for ICR features (appended as icr_meta) : available in a MS Excel CSV file format

54 ENVIRONMENTAL SCIENCES↗

Incorporating ISO Metadata Using HDF Product Designer

The need to store in HDF5 files increasing amounts of metadata of various complexity is greatly overcoming the capabilities of the Earth science metadata conventions currently in use. Data producers until now did not have much choice but to come up with ad hoc solutions to this challenge. Such solutions, in turn, pose a wide range of issues for data managers, distributors, and, ultimately, data users. The HDF Group is experimenting on a novel approach of using ISO 19115 metadata objects as a catch-all container for all the metadata that cannot be fitted into the current Earth science data conventions. This presentation will showcase how the HDF Product Designer software can be utilized to help data producers include various ISO metadata objects in their products.

metadata↗

The Earth System Science Pathfinder VOLCAM Volcanic Hazard Mission

The VOLCAM mission is planned for research on volcanic eruptions and as a demonstration of a satellite system for measuring the location and density of volcanic eruption clouds for use in mitigating hazards to aircraft by the operational air traffic control systems. A requirement for 15 minute time resolution is met by flight as payloads of opportunity on geostationary satellites. Volcanic sulfur dioxide and ash are detected using techniques that have been developed from polar orbiting TOMS (UV) and AVHRR (IR) data. Seven band UV and three band IR filter wheel cameras are designed for continuous observation of the full disk of the earth with moderate (10 - 20 km) ground resolution. This resolution can be achieved with small, low cost instruments but is adequate for discrimination of ash and sulfur dioxide in the volcanic clouds from meteorological clouds and ozone. The false alarm rate is small through use of sulfur dioxide as a unique tracer of volcanic clouds. The UV band wavelengths are optimized to detect very small sulfur dioxide amounts that are present in pre-eruptive outgassing of volcanoes. The system is also capable of tracking dust and smoke clouds, and will be used to infer winds at tropopause level from the correlation of total ozone with potential vorticity.

Krueger, Arlin J.↗

Where is Tropopause?

Much of the earth science that is being proposed for the Stratospheric Observatory for Infrared Astronomy (SOFIA) Upper-Deck Research Facility (SURF) deals with issues related to the tropopause, which will be near SOFIA'S flight level at mid-latitudes. Interpreting in situ or remote aerosol, hydrometeor, and trace gas measurements will require accurate knowledge of the tropopause location. Examples of such measurements are presented, and a brief discussion is given on the Microwave Temperature Profiler (MTP), which the earth science community has used in the past to determine the tropopause height.

in situ↗

C fluxes from incubations of California upland soil with and without synthetic iron (hydr)oxide associations

There is a growing understanding that interactions with soil mineral phases contribute to the accumulation and retention of otherwise degradable organic matter in soils and sediments. However, the bioavailability of organic compounds in mineral-organic-associations, especially under varying environmental conditions is not well known. To assess the impact of mineral association and warming on the decomposition of an easily respirable organic substrate (glucose), we conducted a series of laboratory incubations at different temperatures with field-collected soils from 10 to 20 cm, 50–60 cm, and 80–90 cm depth at the Blodgett Forest Research Station. We added 13C-labeled glucose either directly to native soil or sorbed to one of two synthetic iron (hydr)oxide phases (goethite and ferrihydrite) that differ in crystallinity and affinity for sorbing glucose. We incubated the soils at 25 deg C. This dataset comprises the added glucose C and the cumulative fluxes over 72 and 1896 hours. We found that: (1) association with the Fe (hydr)oxide minerals reduced the decomposition rate of glucose by > 99.5% relative to rate of decomposition for free glucose in soil; (2) the respiration rate per gram carbon did not differ appreciably with depth, suggesting a similar degree of decomposability for native C across depths and that under the incubation conditions total carbon availability represents the principal limitation on respiration under these conditions as opposed to reduced abundance of decomposers or moisture and oxygen limitations; (3) addition of free glucose enhanced native carbon respiration at all soil depths with the largest effect at 50–60 cm; (4) in general respiration of the organo-mineral complex (glucose and iron-(hydr)oxide) was less temperature sensitive than was respiration of native carbon; (5) the addition of organic free mineral decreased the rate of soil respiration in the intermediate 50–60 cm depth soil. The results emphasize the key role of MOAs in regulating the fluxes of carbon from soils to the atmosphere and in turn the stocks of soil carbon.This dataset lists the glucose additions made to soils with and without added geothite or ferrihidrite and the C respired over the timespan of the incubations.

54 ENVIRONMENTAL SCIENCES↗

Porewater data across a catena in the Luquillo Experimental Forest, Puerto Rico.

Landscape topography can influence biogeochemical processes in wet tropical forest soils. This dataset contains porewater concentrations of organic acid (acetate) from 2018 (February 22 to November 14) across a catena in the Luquillo Experimental Forest (LEF), Puerto Rico. The attached CSV file contains information on sampling date, location (El Verde field station) in LEF, topographic positions (ridge, slope, and valley, respectively), depth (unit: cm), and acetate concentration (unit: µM). Porewater concentrations of acetate were lower in the valley as compared to the ridge and slope topographic positions. This dataset can facilitate our understanding of the biogeochemical cycling of carbon and nutrient associated with complex topography in wet tropical forest soils.

54 ENVIRONMENTAL SCIENCES↗

Sentinel-5P/TROPOMI and S-NPP/OMPS Data Support at GES DISC

The TROPspheric Monitoring Instrument (TROPOMI) on the Sentinel-5 Precursor (Sentinel-5P) is the first of the Atmospheric Composition Sentinels by the European Space Agency (ESA) that provides measurements of ozone, NO2, SO2, CH4, CO, formaldehyde, aerosols and cloud at high spatial, temporal and spectral resolutions. The early afternoon orbit of Sentinel-5P mission provides a strong synergy with the U.S. Suomi National Polar-orbiting Partnership (S-NPP) satellite, especially in that the S-NPP Ozone Monitoring and Profiling Suite (OMPS) facilitates high vertically resolved stratospheric and lower mesospheric ozone profiles. The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) supports over a thousand data collections in the Focus Areas of Atmospheric Composition, Water & Energy Cycles, and Climate Variability and it is the Distributed Active Archive Center (DAAC) that is curating both offline Sentinel-5P TROPOMI and S-NPP OMPS Level-1B (L1B) and Level-2 (L2) products. Through its convenient and enhanced tools/services such as OPeNDAP and L2 Subsetting, GES DISC offers air quality remote sensing user communities facile solutions for complex Earth science data and applications. This presentation will demonstrate TROPOMI and OMPS products including earthview radiance, solar irradiance, and currently available L2 datasets, as well as easy ways to access, visualize and subset data. The implementation of the End User License Agreement (EULA) between NASA GES DISC and all data users accessing data at GES DISC will be emphasized as well.

TROPOMI↗

ncompare: A Python Package for Comparing netCDF Structures

Earth science researchers and data engineers have a common problem: they often need to compare data files to see what is different between them. A lot of time is spent developing code to test differences. When it comes to comparing multidimensional data file formats like netCDFs (Network Common Data Form), this is particularly challenging and time-consuming, since there is frequently a need to evaluate the differences between dimension sizes, variable structures, and variable attributes, especially for regression testing. Since netCDFs are widely used in Earth science — with climate models, oceanographic or atmospheric reanalyses, and observational data — improved means of evaluating netCDF files can help enable a wide range of applications. We have developed a reusable open source approach through `ncompare`, which is a Python package for comparing netCDF structures [[https://github.com/nasa/ncompare]]. The `ncompare` tool compares the structure of two Network Common Data Form (NetCDF) files at the command line. It facilitates rapid comparisons by generating a formatted display of the matching and non-matching groups, variables, and associated metadata between two NetCDF datasets. The user has the option to colorize the terminal output for ease of viewing, and `ncompare` can optionally save comparison reports in text, comma-separated value (CSV), and/or Microsoft Excel formats. Despite the availability of tools (such as ncmpidiff or nccmp) that compare the values of variables, there was not previously a readily available, Python-based tool for rapid visual comparisons of group and variable structures, attributes, and chunking. `ncompare` was developed at NASA’s Atmospheric Science Data Center (ASDC) and is a collaboration with NASA Openscapes [[https://nasa-openscapes.github.io]] mentors across 11 of NASA’s data centers. Openscapes’ overarching vision is to support scientific researchers using NASA Earthdata as they migrate their workflows to the cloud. Relevant links: - https://github.com/nasa/ncompare - https://github.com/pyOpenSci/software-submission/issues/146 - https://nasa-openscapes.github.io

Daniel Kaufman↗

Proceedings of the Second Airborne Imaging Spectrometer Data Analysis Workshop

The Second Airborne Imaging Spectrometer (AIS) Data Analysis Workshop was held at the Jet Propulsion Laboratory on May 6, 7, and 8, 1986. It was attended by 100 people from seven countries. Papers were presented by 24 attendees; summaries of 19 of the papers are published in these Workshop Proceedings. The Second Workshop was divided into three sessions: Calibration, the Atmosphere, and Data Techniques; Geological Research; and Botanical and Geobotanical Research. Because many of the AIS researchers have had an additional year to work with their data, a general advance was seen in the utilization of the data for solving earth science problems. The major conclusions that can be drawn from the Workshop are: (1) Almost everyone now working with AIS data is attempting to take into account in data analysis the effects of the atmosphere and sensor calibration and performance. As a result, information extraction techniques are becoming more sophisticated and effective. (2) The emphasis on work in the geological disciplines is beginning to shift to the application of AIS data for solving geological problems now that the efficacy of the data for mineral identification has been demonstrated. (3) In the botanical sciences, interpretation of AIS data is becoming more quantitative. Several statistical techniques are under development for extracting the subtle differences in plant spectra in the region of the near infrared and short wavelength infrared. In summary, an overall advance was seen in the ability to effectively utilize the fundamentally new class of data acquired with imaging spectrometers. There was also a general feeling at the Workshop however, that much work remains to be done in remote sensing research before the maximum potential of these data for solving earth science problems is realized.

Gregg Vane↗

Data from Raczka et al., Interactions between microbial diversity and substrate chemistry determine the fate of carbon in soil, from Elizabeth Woods in Morgantown, West Virginia, USA

File types include: Soil respiration as 13C cumulative respiration from soil incubation experiment, qSIP (quantitative stable isotope probing) data that is "18S apes wide" which is the fungal atom percent excess or how much the fungi took up of the labeled litter and "16S apes wide" which is the bacterial atom percent excess or how much the bacteria took up of the labeled litter, metabolomic data from the incubated soil samples called "Metab Soil Unique Filtered", which is the metabolomic data that had an initial filter from the raw data, and lipidomic data from the incubated soil samples called "All lipids soil". These files were used according to methods in Raczka et al. 2021 Scientific Reports. Headers show soil type (Oak, Poplar) and litter type (also called substrate here, which is labeled as no litter (control), poplar, and oak). This research was done to understand interactions between ecosystem-level processes and microbial diversity that impacts the composition of decomposition products that can form stable soil organic matter.

54 ENVIRONMENTAL SCIENCES↗