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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,297 records · Page 72
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Incorporating Snow Albedo Feedback into Downscaled Temperature and Snow Cover Projections for California’s Sierra Nevada

California’s Sierra Nevada is a high-elevation mountain range with significant seasonal snow cover. Under anthropogenic climate change, amplification of the warming is expected to occur at elevations near snow margins due to snow albedo feedback. However, climate change projections for the Sierra Nevada made by global climate models (GCMs) and statistical downscaling methods miss this key process. Dynamical downscaling simulates the additional warming due to snow albedo feedback. Ideally, dynamical downscaling would be applied to a large ensemble of 30 or more GCMs to project ensemble-mean outcomes and intermodel spread, but this is far too computationally expensive. To approximate the results that would occur if the entire GCM ensemble were dynamically downscaled, a hybrid dynamical–statistical downscaling approach is used. First, dynamical downscaling is used to reconstruct the historical climate of the 1981–2000 period and then to project the future climate of the 2081–2100 period based on climate changes from five GCMs. Next, a statistical model is built to emulate the dynamically downscaled warming and snow cover changes for any GCM. This statistical model is used to produce warming and snow cover loss projections for all available CMIP5 GCMs. These projections incorporate snow albedo feedback, so they capture the local warming enhancement (up to 3°C) from snow cover loss that other statistical methods miss. Capturing these details may be important for accurately projecting impacts on surface hydrology, water resources, and ecosystems

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Changes in the MJO under Greenhouse Gas–Induced Warming in CMIP5 Models

This study investigates changes to the Madden–Julian oscillation (MJO) in response to greenhouse gas–induced warming during the twenty-first century. Changes in the MJO’s amplitude, phase speed, and zonal scale are examined in five models from phase 5 of the Coupled Model Intercomparison Project (CMIP5) that demonstrate superior MJO characteristics. Under warming, the CMIP5 models exhibit a robust increase in the spectral power of planetary-scale, intraseasonal, eastward-propagating (MJO) precipitation anomalies (~10.9% K −1 ). The amplification of MJO variability is accompanied by an increase of the spectral power of the corresponding westward-traveling waves at a similar rate. This suggests that enhanced MJO variability in a warmer climate is likely caused by enhanced background tropical precipitation variability, not by changes in the MJO’s stability. All models examined show an increase in the MJO’s phase speed (1.8% K –1 –4.5% K −1 ) and a decrease in the MJO’s zonal wavenumber (1.0% K –1 –3.8% K −1 ). Using a linear moisture mode framework, this study tests the theory-predicted phase speed changes against the simulated phase speed changes. It is found that the MJO’s acceleration in a warmer climate is a result of enhanced horizontal moisture advection by the steepening of the mean meridional moisture gradient and the decrease in zonal wavenumber, which is partially offset by the lengthening of the convective moisture adjustment time scale and the increase in gross dry stability. While the ability of the linear moisture mode framework to explain MJO phase speed changes is model dependent, the theory can accurately predict the phase speed changes in the model ensemble.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Moist Static Energy Budget Analysis of Tropical Cyclone Intensification in High-Resolution Climate Models

Abstract Tropical cyclone intensification processes are explored in six high-resolution climate models. The analysis framework employs process-oriented diagnostics that focus on how convection, moisture, clouds, and related processes are coupled. These diagnostics include budgets of column moist static energy and the spatial variance of column moist static energy, where the column integral is performed between fixed pressure levels. The latter allows for the quantification of the different feedback processes responsible for the amplification of moist static energy anomalies associated with the organization of convection and cyclone spinup, including surface flux feedbacks and cloud-radiative feedbacks. Tropical cyclones (TCs) are tracked in the climate model simulations and the analysis is applied along the individual tracks and composited over many TCs. Two methods of compositing are employed: a composite over all TC snapshots in a given intensity range, and a composite over all TC snapshots at the same stage in the TC life cycle (same time relative to the time of lifetime maximum intensity for each storm). The radiative feedback contributes to TC development in all models, especially in storms of weaker intensity or earlier stages of development. Notably, the surface flux feedback is stronger in models that simulate more intense TCs. This indicates that the representation of the interaction between spatially varying surface fluxes and the developing TC is responsible for at least part of the intermodel spread in TC simulation.

Wing, Allison A.↗
DOE OSTI2019

Projected Changes in Daily Variability and Seasonal Cycle of Near-Surface Air Temperature over the Globe during the Twenty-First Century

Abstract Increases in atmospheric greenhouse gases will not only raise Earth’s temperature but may also change its variability and seasonal cycle. Here CMIP5 model data are analyzed to quantify these changes in surface air temperature (Tas) and investigate the underlying processes. The models capture well the mean Tas seasonal cycle and variability and their changes in reanalysis, which shows decreasing Tas seasonal amplitudes and variability over the Arctic and Southern Ocean from 1979 to 2017. Daily Tas variability and seasonal amplitude are projected to decrease in the twenty-first century at high latitudes (except for boreal summer when Tas variability increases) but increase at low latitudes. The day of the maximum or minimum Tas shows large delays over high-latitude oceans, while it changes little at low latitudes. These Tas changes at high latitudes are linked to the polar amplification of warming and sea ice loss, which cause larger warming in winter than summer due to extra heating from the ocean during the cold season. Reduced sea ice cover also decreases its ability to cause Tas variations, contributing to the decreased Tas variability at high latitudes. Over low–midlatitude oceans, larger increases in surface evaporation in winter than summer (due to strong winter winds, strengthened winter winds in the Southern Hemisphere, and increased winter surface humidity gradients over the Northern Hemisphere low latitudes), coupled with strong ocean mixing in winter, lead to smaller surface warming in winter than summer and thus increased seasonal amplitudes there. These changes result in narrower (wider) Tas distributions over the high (low) latitudes, which may have important implications for other related fields.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

The effect of atmospheric transmissivity on model and observational estimates of the sea ice albedo feedback

The sea-ice-albedo feedback (SIAF) is the product of the ice sensitivity (IS) – how much the surface albedo in sea-ice regions changes as the planet warms– and the radiative sensitivity (RS) – how much the top of atmosphere radiation changes as the surface albedo changes. We demonstrate that the RS calculated from radiative kernels in climate models is reproduced from calculations using the “approximate partial radiative perturbation” method that uses the climatological radiative fluxes at the top of atmosphere and the assumption that the atmosphere is isotropic to shortwave radiation. This method facilitates the comparison of RS from satellite-based estimates of climatological radiative fluxes with RS estimates across a full suite of coupled climate models and, thus, allows model evaluation of a quantity important in characterizing the climate impact of sea ice concentration changes. The satellite based RS is within the model range of RS that differs by a factor of two across climate models in both the Arctic and Southern Ocean. Observed trends in Arctic sea ice are used to estimate IS which, in conjunction with the satellite-based RS yields an SIAF of 0.16 ± 0.04 W m-2 K-1. This Arctic SIAF estimate suggests a modest amplification of future global surface temperature change by approximately 14% relative to a climate system with no SIAF. We calculate the global albedo feedback in climate models using model specific RS and IS and find a model mean feedback parameter of 0.37 W m-2 K-1 which is 40% larger than the IPCC AR5 estimate based on using RS calculated from radiative kernel calculations in a single climate model.

Arctic, Antarctic, climate change, Climate & Earth↗
DOE OSTI2022

The Role of Seasonality and the ENSO Mode in Central and East Pacific ENSO Growth and Evolution

Abstract A cyclostationary linear inverse model (CSLIM) is used to investigate the seasonal growth of tropical Pacific Ocean El Niño–Southern Oscillation (ENSO) events with canonical, central Pacific (CP), or eastern Pacific (EP) sea surface temperature (SST) characteristics. Analysis shows that all types of ENSO events experience maximum growth toward final states occurring in November and December. ENSO events with EP characteristics also experience growth into May and June, but CP events do not. A single dominant “ENSO mode,” growing from an equatorial heat content anomaly into a characteristic ENSO-type SST pattern in about 9 months (consistent with the delayed/recharge oscillator model of ENSO), is essential for the predictable development of all ENSO events. Notably, its seasonality is responsible for the late-calendar-year maximum in ENSO amplification. However, this ENSO mode alone does not capture the observed growth and evolution of diverse ENSO events, which additionally involve the seasonal evolution of other nonorthogonal Floquet modes. EP event growth occurs when the ENSO mode is initially “covered up” in combination with other Floquet modes. The ENSO mode’s slow seasonal evolution allows it to emerge while the other modes rapidly evolve and/or decay, leading to strongly amplifying and more predictable EP events. CP events develop when the initial state has a substantial contribution from Floquet modes with meridional mode–like SST structures. Thus, while nearly all ENSO events involve the seasonally varying ENSO-mode dynamics, the diversity and predictability of ENSO events cannot be understood without identifying contributions from the remaining Floquet modes. Significance Statement The purpose of this study is to identify structures that lead to seasonal growth of diverse types of El Niño–Southern Oscillation (ENSO) events. An important contribution from this study is that it uses an observationally constrained, empirically derived seasonal model. We find that processes affecting the evolution of diverse ENSO events are strongly seasonally dependent. ENSO events with eastern equatorial Pacific sea surface temperature (SST) characteristics are closely related to a single “ENSO mode” that resembles theoretical models of ENSO variability. ENSO events that have central equatorial Pacific SST characteristics include contributions from additional “meridional mode” structures that evolve via different physical processes. These findings are an important step in evaluating the seasonal predictability of ENSO diversity.

Vimont, Daniel J.↗
DOE OSTI2022

The Roles of Westward-Propagating Waves and the QBO in Limiting MJO Propagation

Abstract A recent study categorized the Madden–Julian oscillation (MJO) during boreal winter season into four types called stand, jump, slow, and fast MJO. This study focuses on the stand and jump MJO. Based on whether their convection penetrates the Maritime Continent (MC), stand and jump MJOs are seen as non-penetrating (NP) MJOs, while the other two are seen as eastward-penetrating (EP) MJOs. Results reveal the relative roles of the westward-propagating wave (WPW), as well as the QBO and ENSO, in limiting MJO propagation. Lack of the premoistening over the southern sea surface of the MC stops NP MJO from penetrating the MC. The active convection of the WPWs hinders the descending branch of the NP MJO circulation and therefore leads to the insufficient meridional advective moistening over the southern sea surface of the MC. The independent convection over the Pacific for jump MJOs is influenced by a combined effect of the QBO and ENSO. The tropopause instability induced by the MJO is found to significantly decouple from its convection over the Pacific in westerly QBO (QBOW) winters more than in easterly QBO (QBOE) winters. For jump MJOs, the independent convection over the central Pacific comes from local WPWs whose amplification and further development into deep convection are correlated to jump the MJOs’ decoupled tropopause instability. For stand MJOs, however, the seasonal-mean La Niña–like cool SST anomalies weaken the WPW activity over the central Pacific and confine WPWs within the western Pacific. Therefore, the decoupled tropopause instability of stand MJOs is out phase of WPWs and fails to induce an independent convection over the central Pacific.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Are North Atlantic Tropical Cyclones Modulated by the Madden–Julian Oscillation in HighResMIP AGCMs?

This study assesses the representation of the observed relationship between Atlantic tropical cyclones (TCs) and the Madden–Julian oscillation (MJO) across nine models participating in CMIP6 High Resolution Model Intercomparison Project (HighResMIP). Most models struggle to faithfully reproduce the observed impacts of the MJO on Atlantic TCs, with the primary issue being the underestimated TC activity over the Atlantic main development region (MDR). The negative biases in genesis frequency within the MDR can be further attributed to weaker-than-observed African easterly wave (AEW) activity south of ∼12°N. Errors in the diabatic heating profile within the Atlantic intertropical convergence zone lead to insufficient potential vorticity production in the lower troposphere and constrain the amplification of AEWs. In addition to the biased TC climatology, the eastward-propagating power of the MJO is consistently underestimated across all models. Nevertheless, in models with a higher eastward–westward power ratio, the simulated MJO demonstrates a stronger capacity to modulate subseasonal TC activity. Models with relatively realistic eastward propagation of the MJO also exhibit greater variance in tropical intraseasonal convection. Stronger contrasts in convective heating over the North Atlantic between phases 2–3 and phases 6–7 drive larger fluctuations in MDR shear and AEW activity over the Gulf of Mexico and West Africa, resulting in a more pronounced TC response to the MJO. Overall, our findings suggest that improved MDR TC climatology and MJO propagation are essential for models to accurately capture the observed modulations of Atlantic TCs by the MJO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Understanding Flood Seasonality and Its Temporal Shifts within the Contiguous United States

Understanding the causes of flood seasonality is critical for better flood management. This study reported herein examines the seasonality of annual maximum floods (AMF) and its changes before and after 1980 at over 250 natural catchments across the contiguous United States. Using circular statistics to define a seasonality index, the analysis focuses on the variability of the flood occurrence date. Generally, catchments with more synchronized seasonal water and energy cycles largely inherit their seasonality of AMF from that of annual maximum rainfall (AMR). In contrast, the seasonality of AMF in catchments with loosely synchronized water and energy cycles are more influenced by high antecedent storage, which is responsible for the amplification of the seasonality of AMF over that of AMR. This understanding then effectively explains a statistically significant shift of flood seasonality detected in some catchments in the recent decades. Catchments where the antecedent soil water storage has increased since 1980 exhibit increasing flood seasonality while catchments that have experienced increases in storm rainfall before the floods have shifted toward floods occurring more variably across the seasons. In the eastern catchments, a concurrent widespread increase in event rainfall magnitude and reduced soil water storage have led to a more variable timing of floods. The findings of the role of antecedent storage and event rainfall on the flood seasonality provide useful insights for understanding future changes in flood seasonality as climate models projected changes in extreme precipitation and aridity over land.

58 GEOSCIENCES↗
DOE OSTI2021

Land–Atmosphere Coupling at the U.S. Southern Great Plains: A Comparison on Local Convective Regimes between ARM Observations, Reanalysis, and Climate Model Simulations

Using the 9-yr warm-season observations at the Atmospheric Radiation Measurement Southern Great Plains site, in this work we assess the land–atmosphere (LA) coupling in the North American Regional Reanalysis (NARR) and two climate models: hindcasts with the Community Atmosphere Model version 5.1 by Cloud-Associated Parameterizations Testbed (CAM5-CAPT) and nudged runs with the Energy Exascale Earth System Model Atmosphere Model version 1 Regionally Refined Model (EAMv1-RRM). We focus on three local convective regimes and diagnose model behaviors using the local coupling metrics. NARR agrees well with observations except a slightly warmer and drier surface with higher downwelling shortwave radiation and lower evaporative fraction. On clear-sky days, it shows warmer and drier early-morning conditions in both models with significant underestimates in surface evaporation by EAMv1-RRM. On the majority of the ARM-observed shallow cumulus days, there is no or little low-level clouds in either model. When captured in models, the simulated shallow cumulus shows much less cloud fraction and lower cloud bases than observed. On the days with late-afternoon deep convection, models tend to present a stable early-morning lower atmosphere more frequently than the observations, suggesting that the deep convection is triggered more often by elevated instabilities. Generally, CAM5-CAPT can reproduce the local LA coupling processes to some extent due to the constrained early-morning conditions and large-scale winds. EAMv1-RRM exhibits large precipitation deficits and warm and dry biases toward mid-to-late summers, which may be an amplification through a positive LA feedback among initial atmosphere and land states, convection triggering and large-scale circulations.

58 GEOSCIENCES↗
DOE OSTI2025

Near Resonance between the Shelf Ocean and Semidiurnal Atmospheric Tidal Winds

This manuscript illustrates the resonance between continental shelf oceans and the semidiurnal atmospheric tidal wind, explaining O(10 −2 ) m semidiurnal sea surface height (SSH) variations in detided datasets. The resonance, similar to amplification of semidiurnal oceanic tides on the gentle and wide shelf, results in pronounced, offshore-attenuated standing waves on the shelf which is driven by the cross-shore pressure gradient force, Coriolis force, and the rotary wind stress. Observations and numerical results from the Texas–Louisiana shelf confirm this mechanism, where a significant presence of the semidiurnal tidal wind couples with O(10 −1 ) m s −1 ocean currents, influencing SSH distribution and sustaining the wave structure. The consistency of the interaction and momentum budgets with the analytical solution suggests the robustness of the semidiurnal atmospheric tidal wind interacting with the shelf ocean. Notably, these findings suggest that similar resonances could occur on other gentle shelves known for enhancing semidiurnal oceanic tides and contribute 3%–10% of the wind work.

Atmosphere-ocean interaction↗
DOE OSTI2024

The Pacific Northwest Heat Wave of 25–30 June 2021: Synoptic/Mesoscale Conditions and Climate Perspective

Abstract An unprecedented heat wave occurred over the Pacific Northwest and southwest Canada on 25–30 June 2021, resulting in all-time temperature records that greatly exceeded previous record maximum temperatures. The impacts were substantial, including several hundred deaths, thousands of hospitalizations, a major wildfire in Lytton, British Columbia, Canada, and severe damage to regional vegetation. Several factors came together to produce this extreme event: a record-breaking midtropospheric ridge over British Columbia in the optimal location, record-breaking midtropospheric temperatures, strong subsidence in the lower atmosphere, low-level easterly flow that produced downslope warming on regional terrain and the removal of cooler marine air, an approaching low-level trough that enhanced downslope flow, the occurrence at a time of maximum insolation, and drier-than-normal soil moisture. It is shown that all-time-record temperatures have not become more frequent and that annual high temperatures only increased at the rate of baseline global warming. Although anthropogenic warming may have contributed as much as 1°C to the event, there is little evidence of further amplification from increasing greenhouse gases. Weather forecasts were excellent for this event, with highly accurate predictions of the extreme temperatures. Significance Statement This paper describes the atmospheric evolution that produced an extreme heat wave over the Pacific Northwest during June 2021 and puts this event into historical perspective.

Meteorology & Atmospheric Sciences↗
DOE OSTI2022

Estimating epistemic uncertainty in soil parameters for nonlinear site response analyses: Introducing the Latin Hypercube Sampling technique

This study quantifies the effects of epistemic uncertainty in soil parameters on nonlinear (NL) site response analysis (SRA) results, validated against the data recorded at a well-instrumented geotechnical downhole array located in Japan. To this end, a one-dimensional soil column model of the Service Hall Array (SHA) near the Kashiwazaki-Kariwa Nuclear Power Plant (KKNPP) is developed using the finite element (FE) program LS-DYNA. The dynamic stress–strain relationship is characterized by a modified two-stage hyperbolic (MTH) NL backbone curve formulation capable of capturing soil behavior at both small- and large-shear strains. The model is then validated against the ground motion recordings to capture the model bias. The uncertainties associated with the shear-wave velocity profile (a small-strain soil property) and soil shear strength (a large-strain soil property) are incorporated in NL SRA to quantify their separate and joint randomization effects on the results. This study proposes using the Latin Hypercube Sampling (LHS) method as an efficient alternative to commonly used methods, such as Standard Monte Carlo (SMC), to account for uncertainty propagation in such reliability analysis. Both low-intensity and design-level records from the recordings at the SHA are applied to study the contribution of the small- and large-strain NL dynamic soil properties. Results from 46,200 NL FE analyses (23,100 per input motion) are presented. Measured and predicted site response, using recorded ground motions at this downhole array, is compared to assess the significance of soil parameter uncertainty on the observed ground motion dispersions. It is demonstrated that increasing the number of soft realizations and implementing higher level earthquake intensity lead to higher ground motion dispersion. Unlike past studies in randomization of Vs profiles with the SMC method, the LHS method is shown to have no significant effect on the predicted median surface response spectra and amplification factors (AFs) for this case study.

Engineering↗
DOE OSTI2023

Characteristics and selection of near-fault simulated earthquake ground motions for nonlinear analysis of buildings

Earthquake-induced ground shaking near rupturing faults is highly sensitive to the rupture characteristics, seismic wave propagation patterns and site conditions, and field recordings of near-fault shaking are relatively sparse. These challenges complicate the assessment of the seismic performance of near-fault structures. A common approach to representing near-fault ground motion in engineering analysis is to explicitly consider and select records with strong directivity pulses (pulse records). We use three-dimensional high-resolution physics-based earthquake simulations to test this approach in the context of scenario-based ground motion record selection, and to study the important characteristics of near-fault ground shaking. We highlight the deficiencies associated with classifying near-fault simulated records as “pulse” or “non-pulse,” based on the presence of a single dominating pulse in the velocity time history. We show that this approach is inadequate for characterizing near-fault shaking on soft soils which can be dominated by both forward rupture directivity and basin amplification effects. We conduct ground motion selection experiments for the analysis of near-fault structures with and without explicit classification of the pulse features in the records, and evaluate the bias in the predicted structural demands. We find that the maximum interstory drift demands on building structures imposed by unscaled site-specific simulated ground motion records selected based on relevant spectral shape features are not sensitive to the classification of records as pulse/non-pulse. Therefore, with regard to predicting the maximum interstory drifts in near-fault buildings, we do not find justification for the binary pulse classification of near-fault records.

42 ENGINEERING↗
DOE OSTI2024

The circular bioeconomy: a driver for system integration

Background: Human and earth system modeling, traditionally centered on the interplay between the energy system and the atmosphere, are facing a paradigm shift. The Intergovernmental Panel on Climate Change’s mandate for comprehensive, cross-sectoral climate action emphasizes avoiding the vulnerabilities of narrow sectoral approaches. Our study explores the circular bioeconomy, highlighting the intricate interconnections among agriculture, forestry, aquaculture, technological advancements, and ecological recycling. Collectively, these sectors play a pivotal role in supplying essential resources to meet the food, material, and energy needs of a growing global population. We pose the pertinent question of what it takes to integrate these multifaceted sectors into a new era of holistic systems thinking and planning. Results: The foundation for discussion is provided by a novel graphical representation encompassing statistical data on food, materials, energy flows, and circularity. This representation aids in constructing an inventory of technological advancements and climate actions that have the potential to significantly reshape the structure and scale of the economic metabolism in the coming decades. In this context, the three dominant mega-trends—population dynamics, economic developments, and the climate crisis—compel us to address the potential consequences of the identified actions, all of which fall under the four categories of substitution, efficiency, sufficiency, and reliability measures. Substitution and efficiency measures currently dominate systems modeling. Including novel bio-based processes and circularity aspects might require only expanded system boundaries. Conversely, paradigm shifts in systems engineering are expected to center on sufficiency and reliability actions. Effectively assessing the impact of sufficiency measures will necessitate substantial progress in inter- and transdisciplinary collaboration, primarily due to their non-technological nature. In addition, placing emphasis on modeling the reliability and resilience of transformation pathways represents a distinct and emerging frontier that highlights the significance of an integrated network of networks. Conclusions: Existing and emerging circular bioeconomy practices can serve as prime examples of system integration. These practices facilitate the interconnection of complex biomass supply chain networks with other networks encompassing feedstock-independent renewable power, hydrogen, CO 2 , water, and other biotic, abiotic, and intangible resources. Elevating the prominence of these connectors will empower policymakers to steer the amplification of synergies and mitigation of tradeoffs among systems, sectors, and goals.

09 BIOMASS FUELS↗
DOE OSTI2020

A pipeline for targeted metagenomics of environmental bacteria

Background:Metagenomics and single cell genomics provide a window into the genetic repertoire of yet uncultivated microorganisms, but both methods are usually taxonomically untargeted. The combination of fluorescence in situ hybridization (FISH) and fluorescence activated cell sorting (FACS) has the potential to enrich taxonomically well-defined clades for genomic analyses. Methods:Cells hybridized with a taxon-specific FISH probe are enriched based on their fluorescence signal via flow cytometric cell sorting. A recently developed FISH procedure, the hybridization chain reaction (HCR)-FISH, provides the high signal intensities required for flow cytometric sorting while maintaining the integrity of the cellular DNA for subsequent genome sequencing. Sorted cells are subjected to shotgun sequencing, resulting in targeted metagenomes of low diversity. Results: Pure cultures of different taxonomic groups were used to (1) adapt and optimize the HCR-FISH protocol and (2) assess the effects of various cell fixation methods on both the signal intensity for cell sorting and the quality of subsequent genome amplification and sequencing. Best results were obtained for ethanol-fixed cells in terms of both HCR-FISH signal intensity and genome assembly quality. Our newly developed pipeline was successfully applied to a marine plankton sample from the North Sea yielding good quality metagenome assembled genomes from a yet uncultivated flavobacterial clade. Conclusions: With the developed pipeline, targeted metagenomes at various taxonomic levels can be efficiently retrieved from environmental samples. The resulting metagenome assembled genomes allow for the description of yet uncharacterized microbial clades.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station

The International Space Station (ISS) is a unique and complex built environment with the ISS surface microbiome originating from crew and cargo or from life support recirculation in an almost entirely closed system. The Microbial Tracking 1 (MT-1) project was the first ISS environmental surface study to report on the metagenome profiles without using whole-genome amplification. The study surveyed the microbial communities from eight surfaces over a 14-month period. The Microbial Tracking 2 (MT-2) project aimed to continue the work of MT-1, sampling an additional four flights from the same locations, over another 14 months. Eight surfaces across the ISS were sampled with sterile wipes and processed upon return to Earth. DNA extracted from the processed samples (and controls) were treated with propidium monoazide (PMA) to detect intact/viable cells or left untreated and to detect the total DNA population (free DNA/compromised cells/intact cells/viable cells). DNA extracted from PMA-treated and untreated samples were analyzed using shotgun metagenomics. Samples were cultured for bacteria and fungi to supplement the above results. Staphylococcus sp. and Malassezia sp. were the most represented bacterial and fungal species, respectively, on the ISS. Overall, the ISS surface microbiome was dominated by organisms associated with the human skin. Multi-dimensional scaling and differential abundance analysis showed significant temporal changes in the microbial population but no spatial differences. The ISS antimicrobial resistance gene profiles were however more stable over time, with no differences over the 5-year span of the MT-1 and MT-2 studies. Twenty-nine antimicrobial resistance genes were detected across all samples, with macrolide/lincosamide/streptogramin resistance being the most widespread. Metagenomic assembled genomes were reconstructed from the dataset, resulting in 82 MAGs. Functional assessment of the collective MAGs showed a propensity for amino acid utilization over carbohydrate metabolism. Co-occurrence analyses showed strong associations between bacterial and fungal genera. Culture analysis showed the microbial load to be on average 3.0 × 10 5 cfu/m 2 . Utilizing various metagenomics analyses and culture methods, we provided a comprehensive analysis of the ISS surface microbiome, showing microbial burden, bacterial and fungal species prevalence, changes in the microbiome, and resistome over time and space, as well as the functional capabilities and microbial interactions of this unique built microbiome. Data from this study may help to inform policies for future space missions to ensure an ISS surface microbiome that promotes astronaut health and spacecraft integrity.

59 BASIC BIOLOGICAL SCIENCES↗