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At least 1,279 records · Page 71

Missing data in multi-omics integration: Recent advances through artificial intelligence

Biological systems function through complex interactions between various ‘omics (biomolecules), and a more complete understanding of these systems is only possible through an integrated, multi-omic perspective. This has presented the need for the development of integration approaches that are able to capture the complex, often non-linear, interactions that define these biological systems and are adapted to the challenges of combining the heterogenous data across ‘omic views. A principal challenge to multi-omic integration is missing data because all biomolecules are not measured in all samples. Due to either cost, instrument sensitivity, or other experimental factors, data for a biological sample may be missing for one or more ‘omic techologies. Recent methodological developments in artificial intelligence and statistical learning have greatly facilitated the analyses of multi-omics data, however many of these techniques assume access to completely observed data. A subset of these methods incorporate mechanisms for handling partially observed samples, and these methods are the focus of this review. We describe recently developed approaches, noting their primary use cases and highlighting each method's approach to handling missing data. We additionally provide an overview of the more traditional missing data workflows and their limitations; and we discuss potential avenues for further developments as well as how the missing data issue and its current solutions may generalize beyond the multi-omics context.

97 MATHEMATICS AND COMPUTING↗

Factors influencing moisture analysis in the 3013 destructive examination surveillance program

Thermogravimetric analysis of a solid sample with mass spectrometry (TGA-MS) of the evolved gas is used in the destructive examination (DE) portion of the Integrated Surveillance Program to quantify the moisture content of the material stored in a 3013 container. As with any measurement determined from a small sample, the collection, storage, transportation, and handling of the sample can affect its ability to represent the properties of the bulk material. During the course of the DE program, questions have periodically arisen concerning the ability of the moisture sample to reflect reliably the actual moisture content of the entire material stored in the 3013 container. Most concerns are related to the ability to collect a representative sample and to preserve the moisture content of the sample between collection and analysis. Recent delays in analysis caused by maintenance issues with the TGA-MS instrument presented a unique opportunity to document and quantify the effects various factors have on the TGA-MS moisture measurement. This report will use recent data to document the effects that current sample collection and handling practices have on the TGA-MS moisture measurement. Some suggestions will be made which could improve the current sample collection and handling practices for the TGA-MS moisture measurement so that the analytical results more accurately reflect the moisture content of the material stored in the 3013 container.

3013↗

Report on Inventory of Samples from Six Capsules from BOR-60

As part of the University of Michigan Grand Challenge Integrated Research Project, Oak Ridge National Laboratory (ORNL) received a drum containing six capsules from Pacific Northwest National Laboratory in August 2025. Each capsule originated at the University of Michigan and contained approximately 44 disks of various iron-based alloys (T91, HT9, T92, 800H, and others). These capsules were irradiated at several temperatures in the BOR-60 fast reactor for multiple cycles to accumulate high levels of damage. The drum was sent to the Irradiated Materials Examination and Testing (IMET) hot cell facility, a Class III nuclear facility, located in Building 3025E at ORNL. The IMET hot cell facility at ORNL is designed to receive irradiation capsules from the High Flux Isotope Reactor and perform capsule opening, basic optical examination, and mechanical testing on neutron-irradiated materials. Capsules were unloaded from the drum and placed in cell 6 for disassembly in February 2026. A low-speed saw opened each capsule, and a manipulator moved the disks to a dual microscope setup for disk identification, as shown in Figure 1.

36 MATERIALS SCIENCE↗

Gluino reach and mass extraction at the LHC in radiatively-driven natural SUSY

Radiatively-driven natural SUSY (RNS) models enjoy electroweak naturalness at the 10% level while respecting LHC sparticle and Higgs mass constraints. Gluino and top-squark masses can range up to several TeV (with other squarks even heavier) but a set of light Higgsinos are required with mass not too far above mh ~ 125 GeV. Within the RNS framework, gluinos dominantly decay via g˜ → tt ˜* 1 , t ¯t ˜ 1 → tt ¯Z 1,2 or tb¯W- 1 + c.c., where the decay products of the higgsino-like W ~ 1 and Z ~ 2 are very soft. Gluino pair production is, therefore, signaled by events with up to four hard b-jets and large E T . We devise a set of cuts to isolate a relatively pure gluino sample at the (high-luminosity) LHC and show that in the RNS model with very heavy squarks, the gluino signal will be accessible for m g ˜ < 2400 (2800) GeV for an integrated luminosity of 300 (3000) fb -1 . We also show that the measurement of the rate of gluino events in the clean sample mentioned above allows for a determination of m g ˜ with a statistical precision of 2–5% (depending on the integrated luminosity and the gluino mass) over the range of gluino masses where a 5σ discovery is possible at the LHC.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Wind Turbine Rotor Design Optimization Using Importance Sampling: Preprint

Probabilistic methods are commonly adopted to estimate both ultimate and fatigue loads in wind turbines, and multiple papers have presented a variety of approaches. In contrast, system-level, integrated design optimization methods for wind turbines have so far relied on deterministic methods to estimate loads and deflections. This work aims at addressing this gap by adopting importance sampling to estimate ultimate blade deflection for use within a rotor design optimization. A comparison between the results of this approach against traditional approaches using deterministic load evaluations show that the probabilistic approach is more conservative and that the solutions found with deterministic approaches violate the probabilistic constraint on tip deflection between 13% and 17%. This highlights the importance of accurate load and deflection estimates and demonstrates that probabilistic approaches can be successfully integrated within a wind turbine design process despite the higher computational costs.

17 WIND ENERGY↗

Prediction and uncertainty quantification of shale well performance using multifidelity Monte Carlo

Uncertainty quantification is an integral component of reservoir management, especially considering the inherent uncertainty in subsurface systems. While a standard practice to estimate the uncertainty, Monte Carlo (MC) simulation is computationally intense when the sampling population comprises high-fidelity simulations. Alternatively, the Multi-fidelity Monte Carlo (MFMC) simulation overcomes this computational intensity by integrating low- and high-fidelity simulations. Our goal is to minimize the number of expensive high-fidelity simulations while maintaining accuracy and using numerous fast and cheap low-fidelity simulations to efficiently sample to input parameter space of interest. We selected gas production from unconventional wells to demonstrate the potential speedups and accuracy of the MFMC approach. The model fidelity usually determines the trade-off between accuracy and efficiency. While the high-fidelity model is more accurate, the low-fidelity model is more efficient. Our high-fidelity simulation includes reservoir simulations of a hydraulically fractured well. On the other hand, our low-fidelity model comprises the parallel-plate flow model. We used differential programming to efficiently solve the 1D flow model, where automatic differentiation is used to efficiently compute the gradients. We matched the production profile of high-fidelity simulations with our low-fidelity simulations. Then, we used a support vector regression to map the high- and low-fidelity input parameters. The mapping function is essential to tune the low-dimensional parameter space of the low-fidelity model to the high-dimensional parameter space of the high-fidelity model. We found that we can use a combination of 9 high fidelity and 10,000 low fidelity simulations to efficiently and accurately simulate pressure management. This method is at least two orders of magnitude faster than only using high-fidelity simulations. Finally, from a broader perspective, MFMC could efficiently estimate the uncertainty of various systems and models, integrating low- and high-fidelity models.

04 OIL SHALES AND TAR SANDS↗

Automated, Miniaturized Instrument for Measuring Gene Expression in Space

To facilitate astrobiological studies on the survival and adaptation of microorganisms and mixed microbial cultures to space environment, we have been developing a fully automated, miniaturized system for measuring their gene expression on small spacecraft. This low-cost, multi-purpose instrument represents a major scientific and technological advancement in our ability to study the impact of the space environment on biological systems by providing data on cellular metabolism and regulation orders of magnitude richer than what is currently available. The system supports growth of the organism, lyse it to release the expressed RNA, label the RNA, read the expression levels of a large number of genes by microarray analysis of labeled RNA and transmit the measurements to Earth. To measure gene expression we use microarray technology developed by CombiMatrix, which is based on electrochemical reactions on arrays of electrodes on a semiconductor substrate. Since the electrical integrity of the microarray remains intact after probe synthesis, the circuitry can be employed to sense nucleic acid binding at each electrode. CombiMatrix arrays can be sectored to allow multiple samples per chip. In addition, a single array can be used for several assays. The array has been integrated into an automated microfluidic cartridge that uses flexible reagent blisters and pinch pumping to move liquid reagents between chambers. The proposed instrument will help to understand adaptation of terrestrial life to conditions beyond the planet of origin, identify deleterious effects of the space environment, develop effective countermeasures against these effects, and test our ability to sustain and grow in space organisms that can be used for life support and in situ resource utilization during long-duration space exploration. The instrument is suitable for small satellite platforms, which provide frequent, low cost access to space. It can be also used on any other platform in space, including the ISS. It can be replicated and used with only small modifications in multiple biological experiments with a broad range of goals in mind.

Pohorille, A.↗

Project management techniques for highly integrated programs

The management and control of a representative, highly integrated high-technology project, in the X-29A aircraft flight test project is addressed. The X-29A research aircraft required the development and integration of eight distinct technologies in one aircraft. The project management system developed for the X-29A flight test program focuses on the dynamic interactions and the the intercommunication among components of the system. The insights gained from the new conceptual framework permitted subordination of departments to more functional units of decisionmaking, information processing, and communication networks. These processes were used to develop a project management system for the X-29A around the information flows that minimized the effects inherent in sampled-data systems and exploited the closed-loop multivariable nature of highly integrated projects.

Stewart, J. F.↗

Milky Way mass with K giants and BHB stars using LAMOST, SDSS/SEGUE, and Gaia : 3D spherical Jeans equation and tracer mass estimator

ABSTRACT We measure the enclosed Milky Way mass profile to Galactocentric distances of ∼70 and ∼50 kpc using the smooth, diffuse stellar halo samples of Bird et al. The samples are Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) and Sloan Digital Sky Survey/Sloan Extension for Galactic Understanding and Exploration (SDSS/SEGUE) K giants (KG) and SDSS/SEGUE blue horizontal branch (BHB) stars with accurate metallicities. The 3D kinematics are available through LAMOST and SDSS/SEGUE distances and radial velocities and Gaia DR2 proper motions. Two methods are used to estimate the enclosed mass: 3D spherical Jeans equation and Evans et al. tracer mass estimator (TME). We remove substructure via the Xue et al. method based on integrals of motion. We evaluate the uncertainties on our estimates due to random sampling noise, systematic distance errors, the adopted density profile, and non-virialization and non-spherical effects of the halo. The tracer density profile remains a limiting systematic in our mass estimates, although within these limits we find reasonable agreement across the different samples and the methods applied. Out to ∼70 and ∼50 kpc, the Jeans method yields total enclosed masses of 4.3 ± 0.95 (random) ±0.6 (systematic) × 1011 M⊙ and 4.1 ± 1.2 (random) ±0.6 (systematic) × 1011 M⊙ for the KG and BHB stars, respectively. For the KG and BHB samples, we find a dark matter virial mass of $M_{200}=0.55^{+0.15}_{-0.11}$ (random) ±0.083 (systematic) × 1012 M⊙ and $M_{200}=1.00^{+0.67}_{-0.33}$ (random) ±0.15 (systematic) × 1012 M⊙, respectively.

79 ASTRONOMY AND ASTROPHYSICS↗

SDSS-IV MaNGA: Modeling the Spectral Line-spread Function to Subpercent Accuracy

The Sloan Digital Sky Survey IV Mapping Nearby Galaxies at APO (MaNGA) program has been operating from 2014 to 2020, and has now observed a sample of 9269 galaxies in the low redshift universe (z ∼ 0.05) with integral-field spectroscopy. With rest-optical (λλ0.36–1.0 μm) spectral resolution R ∼ 2000 the instrumental spectral line-spread function (LSF) typically has 1σ width of about 70 km s{sup −1}, which poses a challenge for the study of the typically 20–30 km s{sup −1} velocity dispersion of the ionized gas in present-day disk galaxies. In this contribution, we present a major revision of the MaNGA data pipeline architecture, focusing particularly on a variety of factors impacting the effective LSF (e.g., under-sampling, spectral rectification, and data cube construction). Through comparison with external assessments of the MaNGA data provided by substantially higher-resolution R ∼ 10,000 instruments, we demonstrate that the revised MPL-10 pipeline measures the instrumental LSF sufficiently accurately (≤0.6% systematic, 2% random around the wavelength of Hα) that it enables reliable measurements of astrophysical velocity dispersions σ {sub Hα} ∼ 20 km s{sup −1} for spaxels with emission lines detected at signal-to-noise ratio > 50. Velocity dispersions derived from [O II], Hβ, [O III], [N II], and [S II] are consistent with those derived from Hα to within about 2% at σ {sub Hα} > 30 km s{sup −1}. Although the impact of these changes to the estimated LSF will be minimal at velocity dispersions greater than about 100 km s{sup −1}, scientific results from previous data releases that are based on dispersions far below the instrumental resolution should be reevaluated.

47 OTHER INSTRUMENTATION↗

Airborne 2-Micron Double-Pulsed Integrated Path Differential Absorption Lidar for Column CO2 Measurement

Double-pulse 2-micron lasers have been demonstrated with energy as high as 600 millijouls and up to 10 Hz repetition rate. The two laser pulses are separated by 200 microseconds and can be tuned and locked separately. Applying double-pulse laser in DIAL system enhances the CO2 measurement capability by increasing the overlap of the sampled volume between the on-line and off-line. To avoid detection complicity, integrated path differential absorption (IPDA) lidar provides higher signal-to-noise ratio measurement compared to conventional range-resolved DIAL. Rather than weak atmospheric scattering returns, IPDA rely on the much stronger hard target returns that is best suited for airborne platforms. In addition, the IPDA technique measures the total integrated column content from the instrument to the hard target but with weighting that can be tuned by the transmitter. Therefore, the transmitter could be tuned to weight the column measurement to the surface for optimum CO2 interaction studies or up to the free troposphere for optimum transport studies. Currently, NASA LaRC is developing and integrating a double-Pulsed 2-micron direct detection IPDA lidar for CO2 column measurement from an airborne platform. The presentation will describe the development of the 2-micron IPDA lidar system and present the airborne measurement of column CO2 and will compare to in-situ measurement for various ground target of different reflectivity.

Singh, Upendra N.↗

Investigation of Mass Transfer and Sorption in CO 2 /Brine/Rock Systems via In Situ FT-IR

CO 2 geological storage in deep saline formations is considered a promising method to mitigate anthropogenic CO 2 emissions and, thereby, minimize changes to the Earth’s atmosphere. A fundamental understanding of CO 2 mass transfer and sorption phenomena in brine-saturated reservoir formations is necessary to understand the long-term fate of injected CO 2 as it is subjected to different (physical, dissolution, and mineral) trapping mechanisms. In this work, we investigate CO 2 sorption in brine-saturated and dry Mt. Simon sandstone samples via in-situ Fourier Transform infrared spectroscopy (FT-IR) at elevated pressures, ranging from 0.3 MPa to 8.3 MPa, at a temperature of 50 ⁰C. The FT-IR spectra of bulk-phase CO 2 were simultaneously recorded under the same conditions. For bulk-phase CO 2 , we observed, in agreement with past studies, a doublet peak at 2361 cm -1 and 2336 cm -1 and another peak (ν 2 bending mode) at 667 cm -1 . With increasing pressure, the position of the peak at 667 cm -1 remains invariant, however, when crossing into the supercritical region the doublet peak degenerates onto a single peak at 2336 cm -1 with a barely visible shoulder at 2361 cm -1 . The bulk CO 2 data provide a perfect fit for Beer’s law for the whole range of pressure conditions. For the dry sample, the IR spectrum is experimentally indistinguishable from the bulk CO 2 spectrum, signifying that if physical adsorption occurs to any significant extent, the adsorbed CO 2 molecules are not substantially more rotationally constrained than the dense bulk CO 2 molecules. For the brine-saturated sample, we observe a strong band centered at 2342 cm -1 and a small companion peak at 2360-2361 cm -1 that degenerates into a barely visible shoulder peak at the higher pressures. The 2342 cm -1 band has been previously observed by other investigators for CO 2 dissolved in bulk water/brine as well during its adsorption on a variety of other wet natural porous media. We observe no peaks corresponding to bicarbonate or carbonate bulk species, which correlates well with the prior literature on similar low-pH aqueous solutions. The integrated peak area for the CO 2 sorbed in the brine-saturated sample correlates linearly with its solubility in the same bulk brine, as measured separately via a PVT-cell approach. Here, this validates the accuracy of both techniques, and the potential of the FT-IR method to be used in the study of mass transfer and adsorption in such systems. To that effect, a simple mathematical model is presented to analyze the FT-IR data to determine the CO 2 effective diffusivity in the brine-saturated sandstone sample.

58 GEOSCIENCES↗

Optimizing Long-term Monitoring of Radiation Air Dose Rates - 19169

Radiation air dose rates near the Fukushima Daiichi Nuclear Power Plant (NPP) have been steadily decreasing over the past seven years since the accident in March 2011. After seven years, the radiation monitoring program is expected to transition from short-term emergency responses to long-term monitoring. The objectives of long-term monitoring are often different from early emergency responses, since extensive data accumulation has led to an understanding of contaminant distributions and mobility. The main long-term monitoring objectives are (1) to confirm system stability and the continuing reduction of contaminant and hazard levels, (2) to provide assurance for the public, (3) to accumulate the basic datasets for scientific knowledge and future preparation, and (4) to detect changes or anomalies in contaminant mobility (if they occur), or any unexpected processes or events. In this work, we have developed a methodology for optimizing the sampling locations of radiation air dose-rate monitoring. Three steps are taken in order to determine sampling locations in a systematic manner: (1) prioritizing the critical locations, such as schools or regulatory requirement locations, (2) diversifying locations across the key environmental controls that are known to influence contaminant mobility and distributions, and (3) capturing the heterogeneity of radiation air dose rates across the domain. In the second step, we use a Gaussian mixture model to identify the representative locations in multiple environmental variables, such as elevation and land-cover types. In the third step, we use a Gaussian process model to capture and estimate the heterogeneity of air dose rates across the domain. We use the integrated dose-rate map from the Bayesian geostatistical method as the reference map and distribute the sampling in such a way as to capture the heterogeneity of the reference map. Although we assume hypothetical sets of measurement locations to evaluate the performance of the methodology and algorithms, we have demonstrated this approach using real, spatially extensive datasets, including the integrated air-dose-rate map of 2016. Our results have shown that this approach allows us to add sampling locations in a systematic manner. Increasing the number of sampling locations can better capture the heterogeneity of dose rates, although the estimation error does not decrease further after a certain number of samples. We have also found that when there are restrictions such as pre-existing monitoring locations or the ones along roads, the spatial estimation becomes poor even with the same number of monitoring locations. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Development of a rapid viability RT-PCR (RV-RT-PCR) method to detect infectious SARS-CoV-2 from swabs

Since the rapid onset of the COVID-19 pandemic, its causative virus, Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2), continues to spread and increase the number of fatalities. To expedite studies on understanding potential surface transmission of the virus and to aid environmental epidemiological investigations, here we developed a rapid viability reverse transcriptase PCR (RV-RT-PCR) method that detects viable (infectious) SARS-CoV-2 from swab samples in <1 day compared to several days required by current gold-standard cell-culture-based methods. The method integrates cell-culture-based viral enrichment in a 96-well plate format with gene-specific RT-PCR-based analysis before and after sample incubation to determine the cycle threshold (C T ) difference (ΔC T ). An algorithm based on ΔC T ≥ 6 representing ~ 2-log or more increase in SARS-CoV-2 RNA following enrichment determines the presence of infectious virus. The RV-RT-PCR method with 2-hr viral infection and 9-hr post-infection incubation periods includes ultrafiltration to concentrate virions, resulting in detection of <50 SARS-CoV-2 virions in swab samples in 17 h (for a batch of 12 swabs), compared to days typically required by the cell-culture-based method. The SARS-CoV-2 RV-RT-PCR method may also be useful in clinical sample analysis and antiviral drug testing, and could serve as a model for developing rapid methods for other viruses of concern.

60 APPLIED LIFE SCIENCES↗

Stream water sourcing from high-elevation snowpack inferred from stable isotopes of water: a novel application of d-excess values

About 80 % of the precipitation at the Colorado River's headwaters is snow, and the resulting snowmelt-driven hydrograph is a crucial water source for about 40 million people. Snowmelt from alpine and subalpine snowpack contributes substantially to groundwater recharge and river flow. However, the dynamics of snowmelt progression are not well understood because observations of the high-elevation snowpack are difficult due to challenging access in complex mountainous terrain as well as the cost and labor intensity of currently available methods. We present a novel approach to infer the processes and dynamics of high-elevation snowmelt contributions predicated upon stable hydrogen and oxygen isotope ratios observed in streamflow. We show that deuterium-excess (d-excess) values of stream water could serve as a comparatively cost-effective proxy for a catchment-integrated signal of high-elevation snowmelt contributions to catchment runoff. We sampled stable hydrogen and oxygen isotope ratios of the precipitation, snowpack, and stream water in the East River, a headwater catchment of the Colorado River, and the stream water of larger catchments at sites on the Gunnison River and Colorado River. The d-excess of snowpack increased with elevation; the upper subalpine and alpine snowpack (> 3200 m) had substantially higher d-excess compared to lower elevations (< 3200 m) in the study area. The d-excess values of stream water reflected this because d-excess values increased as the higher-elevation snowpack contributed more to stream water generation later in the snowmelt/runoff season. End-member mixing analyses based on the d-excess data showed that the share of high-elevation snowmelt contributions within the snowmelt hydrograph was on average 44 % and generally increased during melt period progression, up to 70 %. The observed pattern was consistent during 6 years for the East River, and a similar relation was found for the larger catchments on the Gunnison and Colorado rivers. High-elevation snowpack contributions were found to be higher for years with lower snowpack and warmer spring temperatures. Thus, we conclude that the d-excess of stream water is a viable proxy to observe changes in high-elevation snowmelt contributions in catchments at various scales. Inter-catchment comparisons and temporal trends of the d-excess of stream water could therefore serve as a catchment-integrated measure to monitor if mountain systems rely on high-elevation water inputs more during snow drought compared to years of average snowpack depths.

54 ENVIRONMENTAL SCIENCES↗

Measurement of total and differential W + W - production cross sections in proton-proton collisions at √s=8 TeV with the ATLAS detector and limits on anomalous triple-gauge-boson couplings

The production of W boson pairs in proton-proton collisions at √s=8 TeV is studied using data corresponding to 20.3 fb -1 of integrated luminosity collected by the ATLAS detector during 2012 at the CERN Large Hadron Collider. The W bosons are reconstructed using their leptonic decays into electrons or muons and neutrinos. Events with reconstructed jets are not included in the candidate event sample. A total of 6636 WW candidate events are observed. Measurements are performed in fiducial regions closely approximating the detector acceptance. The integrated measurement is corrected for all acceptance effects and for the W branching fractions to leptons in order to obtain the total WW production cross section, which is found to be 71.1 ± 1.1(stat) -5.0+5.7(syst)±1.4(lumi) pb. This agrees with the next-to-next-to-leading-order Standard Model prediction of 63.2-1.4+1.6(scale)±1.2(PDF) pb. Fiducial differential cross sections are measured as a function of each of six kinematic variables. The distribution of the transverse momentum of the leading lepton is used to set limits on anomalous triple-gauge-boson couplings.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A Balanced Model for Exploration of the Terrestrial Planets: Lessons from the Lunar Experience

The Moon is the only extraterrestrial rocky body for which we have a combination of surface-selected samples, high-resolution orbital photography (Lunar Orbiter), manned and robotic surface exploration (Surveyor, Apollo, Luna), and global compositional, mineralogical, and geophysical data (Galileo, Clementine, Lunar Prospector). Beginning in 1998, CAPTEM organized a series of workshops and conference sessions aimed at integrating these diverse data sets. The insights gained by bringing together scientists from the remote-sensing and sample-analysis communities have been singularly rewarding. Not least of these has been the recognition by both groups that having both kinds of data maximizes the scientific return and permits reconciling information from diverse scales and perspectives. The 20-20 hindsight of the Lunar experience thus provides important lessons; learning from mistakes as well as successes, we can derive a sensible scientific program for Mars exploration. In this abstract, we describe examples of key information from (a) in-situ geologic investigation, (b) laboratory analysis of returned samples whose geologic context and location are known, and (c) global remote sensing of mineralogy, composition, and geophysical parameters. We then show the value of integrating these diverse data sets.

Jolliff, B. L.↗

Accelerated deep self-supervised ptycho-laminography for three-dimensional nanoscale imaging of integrated circuits

Three-dimensional inspection of nanostructures such as integrated circuits is important for security and reliability assurance. Two scanning operations are required: ptychographic to recover the complex transmissivity of the specimen, and rotation of the specimen to acquire multiple projections covering the 3D spatial frequency domain. Two types of rotational scanning are possible: tomographic and laminographic. For flat, extended samples, for which the full 180° coverage is not possible, the latter is preferable because it provides better coverage of the 3D spatial frequency domain compared to limited-angle tomography. It is also because the amount of attenuation through the sample is approximately the same for all projections. However, both techniques are time consuming because of extensive acquisition and computation time. Here, we demonstrate the acceleration of ptycho-laminographic reconstruction of integrated circuits with 16 times fewer angular samples and 4.67 times faster computation by using a physics-regularized deep self-supervised learning architecture. We check the fidelity of our reconstruction against a densely sampled reconstruction that uses full scanning and no learning. As already reported elsewhere [ Opt. Express 28 , 12872 ( 2020 ) OPEXFF 1094-4087 10.1364/OE.379200 ], we observe improvement of reconstruction quality even over the densely sampled reconstruction, due to the ability of the self-supervised learning kernel to fill the missing cone.

47 OTHER INSTRUMENTATION↗