Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets
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59 BASIC BIOLOGICAL SCIENCES↗
SEARCH · Engineering Papers
Results for “interactive data visualization”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Experimental study of effects of forebody geometry on high angle of attack static and dynamic stability and control
A series of low-speed wind tunnel tests on a generic airplane model with a cylindrical fuselage were made to investigate the effects of forebody shape and fitness ratio, and fuselage/wing proximity on static and dynamic lateral/directional stability. In addition, some preliminary testing to determine the effectiveness of deflectable forebody strakes for high angle of attack yaw control was conducted. During the stability investigation, 11 forebodies were tested including three different cross-sectional shapes with fineness ratios of 2, 3, and 4. In addition, the wing was tested at two longitudinal positions to provide a substantial variation in forebody/wing proximity. Conventional force tests were conducted to determine static stability characteristics, and single-degree-of-freedom free-to-roll tests were conducted to study the wing rock characteristics of the model with the various forebodies. Flow visualization data were obtained to aid in the analysis of the complex flow phenomena involved. The results show that the forebody cross-sectional shape and fineness ratio and forebody/wing proximity can strongly affect both static and dynamic (roll) stability at high angles of attack. These characteristics result from the impact of these factors on forebody vortex development, the behavior of the vortices in sideslip, and their interaction with the wing flow field. Preliminary results from the deflectable strake investigation indicated that forebody flow control using this concept can provide very large yaw control moments at stall and post-stall angles of attack.
Brandon, J. M.↗
Interactive Decision-Support Tool for Risk-Based Radiation Therapy Plan Comparison for Hodgkin Lymphoma
Purpose: To present a novel tool that allows quantitative estimation and visualization of the risk of various relevant normal tissue endpoints to aid in treatment plan comparison and clinical decision making in radiation therapy (RT) planning for Hodgkin lymphoma (HL). Methods and Materials: A decision-support tool for risk-based, individualized treatment plan comparison is presented. The tool displays dose–response relationships, derived from published clinical data, for a number of relevant side effects and thereby provides direct visualization of the trade-off between these endpoints. The Quantitative Analyses of Normal Tissue Effects in the Clinic reports were applied, complemented with newer data where available. A “relevance score” was assigned to each data source, reflecting how relevant the input data are to current RT for HL. Results: The tool is applied to visualize the local steepness of dose–response curves to drive the reoptimization of a volumetric modulated arc therapy treatment plan for an HL patient with head-and-neck involvement. We also use this decision-support tool to visualize and quantitatively evaluate the trade-off between a 3-dimensional conformal RT plan and a volumetric modulated arc therapy plan for a patient with mediastinal HL. Conclusion: This multiple-endpoint decision-support tool provides quantitative risk estimates to supplement the clinical judgment of the radiation oncologist when comparing different RT options.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
NASA VERVE: Interactive 3D Visualization Within Eclipse
At NASA, we develop myriad Eclipse RCP applications to provide situational awareness for remote systems. The Intelligent Robotics Group at NASA Ames Research Center has developed VERVE - a high-performance, robot user interface that provides scientists, robot operators, and mission planners with powerful, interactive 3D displays of remote environments.VERVE includes a 3D Eclipse view with an embedded Java Ardor3D scenario, including SWT and mouse controls which interact with the Ardor3D camera and objects in the scene. VERVE also includes Eclipse views for exploring and editing objects in the Ardor3D scene graph, and a HUD (Heads Up Display) framework allows Growl-style notifications and other textual information to be overlayed onto the 3D scene. We use VERVE to listen to telemetry from robots and display the robots and associated scientific data along the terrain they are exploring; VERVE can be used for any interactive 3D display of data.VERVE is now open source. VERVE derives from the prior Viz system, which was developed for Mars Polar Lander (2001) and used for the Mars Exploration Rover (2003) and the Phoenix Lander (2008). It has been used for ongoing research with IRG's K10 and KRex rovers in various locations. VERVE was used on the International Space Station during two experiments in 2013 - Surface Telerobotics, in which astronauts controlled robots on Earth from the ISS, and SPHERES, where astronauts control a free flying robot on board the ISS.We will show in detail how to code with VERVE, how to interact between SWT controls to the Ardor3D scenario, and share example code.
3D Visualization↗
Distributed earth model/orbiter simulation
Distributed Earth Model/Orbiter Simulation (DEMOS) is a network based application developed for the UNIX environment that visually monitors or simulates the Earth and any number of orbiting vehicles. Its purpose is to provide Mission Control Center (MCC) flight controllers with a visually accurate three dimensional (3D) model of the Earth, Sun, Moon and orbiters, driven by real time or simulated data. The project incorporates a graphical user interface, 3D modelling employing state-of-the art hardware, and simulation of orbital mechanics in a networked/distributed environment. The user interface is based on the X Window System and the X Ray toolbox. The 3D modelling utilizes the Programmer's Hierarchical Interactive Graphics System (PHIGS) standard and Raster Technologies hardware for rendering/display performance. The simulation of orbiting vehicles uses two methods of vector propagation implemented with standard UNIX/C for portability. Each part is a distinct process that can run on separate nodes of a network, exploiting each node's unique hardware capabilities. The client/server communication architecture of the application can be reused for a variety of distributed applications.
Geisler, Erik↗
Towards a Comprehensive Computational Simulation System for Turbomachinery
The objective of this work is to develop algorithms associated with a comprehensive computational simulation system for turbomachinery flow fields. This development is accomplished in a modular fashion. These modules includes grid generation, visualization, network, simulation, toolbox, and flow modules. An interactive grid generation module is customized to facilitate the grid generation process associated with complicated turbomachinery configurations. With its user-friendly graphical user interface, the user may interactively manipulate the default settings to obtain a quality grid within a fraction of time that is usually required for building a grid about the same geometry with a general-purpose grid generation code. Non-Uniform Rational B-Spline formulations are utilized in the algorithm to maintain geometry fidelity while redistributing grid points on the solid surfaces. Bezier curve formulation is used to allow interactive construction of inner boundaries. It is also utilized to allow interactive point distribution. Cascade surfaces are transformed from three-dimensional surfaces of revolution into two-dimensional parametric planes for easy manipulation. Such a transformation allows these manipulated plane grids to be mapped to surfaces of revolution by any generatrix definition. A sophisticated visualization module is developed to al-low visualization for both grid and flow solution, steady or unsteady. A network module is built to allow data transferring in the heterogeneous environment. A flow module is integrated into this system, using an existing turbomachinery flow code. A simulation module is developed to combine the network, flow, and visualization module to achieve near real-time flow simulation about turbomachinery geometries. A toolbox module is developed to support the overall task. A batch version of the grid generation module is developed to allow portability and has been extended to allow dynamic grid generation for pitch changing turbomachinery configurations. Various applications with different characteristics are presented to demonstrate the success of this system.
Shih, Ming-Hsin↗
Helicopter Human Factors
Even under optimal conditions, helicopter flight is a most demanding form of human-machine interaction, imposing continuous manual, visual, communications, and mental demands on pilots. It is made even more challenging by small margins for error created by the close proximity of terrain in NOE flight and missions flown at night and in low visibility. Although technology advances have satisfied some current and proposed requirements, hardware solutions alone are not sufficient to ensure acceptable system performance and pilot workload. However, human factors data needed to improve the design and use of helicopters lag behind advances in sensor, display, and control technology. Thus, it is difficult for designers to consider human capabilities and limitations when making design decisions. This results in costly accidents, design mistakes, unrealistic mission requirements, excessive training costs, and challenge human adaptability. NASA, in collaboration with DOD, industry, and academia, has initiated a program of research to develop scientific data bases and design principles to improve the pilot/vehicle interface, optimize training time and cost, and maintain pilot workload and system performance at an acceptable level. Work performed at Ames, and by other research laboratories, will be reviewed to summarize the most critical helicopter human factors problems and the results of research that has been performed to: (1) Quantify/model pilots use of visual cues for vehicle control; (2) Improve pilots' performance with helmet displays of thermal imagery and night vision goggles for situation awareness and vehicle control; (3) Model the processes by which pilots encode maps and compare them to the visual scene to develop perceptually and cognitively compatible electronic map formats; (4) Evaluate the use of spatially localized auditory displays for geographical orientation, target localization, radio frequency separation; (5) Develop and flight test control/display concepts; (6) Quantify, model, predict, and improve pilots, workload-management strategies; and (7) Design computer-game trainers to reduce training time and cost.
Hart, Sandra G.↗
CAPRI: Using a Geometric Foundation for Computational Analysis and Design
CAPRI (Computational Analysis Programming Interface) is a software development tool intended to make computerized design, simulation and analysis faster and more efficient. The computational steps traditionally taken for most engineering analysis (Computational Fluid Dynamics (CFD), structural analysis, etc.) are: Surface Generation, usually by employing a Computer Aided Design (CAD) system; Grid Generation, preparing the volume for the simulation; Flow Solver, producing the results at the specified operational point; Post-processing Visualization, interactively attempting to understand the results. It should be noted that the structures problem is more tractable than CFD; there are fewer mesh topologies used and the grids are not as fine (this problem space does not have the length scaling issues of fluids). For CFD, these steps have worked well in the past for simple steady-state simulations at the expense of much user interaction. The data was transmitted between phases via files. In most cases, the output from a CAD system could go IGES files. The output from Grid Generators and Solvers do not really have standards though there are a couple of file formats that can be used for a subset of the gridding (i.e. PLOT3D) data formats and the upcoming CGNS). The user would have to patch up the data or translate from one format to another to move to the next step. Sometimes this could take days. Instead of the serial approach to analysis, CAPRI takes a geometry centric approach. CAPRI is a software building tool-kit that refers to two ideas: (1) A simplified, object-oriented, hierarchical view of a solid part integrating both geometry and topology definitions, and (2) programming access to this part or assembly and any attached data. The connection to the geometry is made through an Application Programming Interface (API) and not a file system.
Haimes, Robert↗
Advances in Rotor Performance and Turbulent Wake Simulation Using DES and Adaptive Mesh Refinement
Time-dependent Navier-Stokes simulations have been carried out for a rigid V22 rotor in hover, and a flexible UH-60A rotor in forward flight. Emphasis is placed on understanding and characterizing the effects of high-order spatial differencing, grid resolution, and Spalart-Allmaras (SA) detached eddy simulation (DES) in predicting the rotor figure of merit (FM) and resolving the turbulent rotor wake. The FM was accurately predicted within experimental error using SA-DES. Moreover, a new adaptive mesh refinement (AMR) procedure revealed a complex and more realistic turbulent rotor wake, including the formation of turbulent structures resembling vortical worms. Time-dependent flow visualization played a crucial role in understanding the physical mechanisms involved in these complex viscous flows. The predicted vortex core growth with wake age was in good agreement with experiment. High-resolution wakes for the UH-60A in forward flight exhibited complex turbulent interactions and turbulent worms, similar to the V22. The normal force and pitching moment coefficients were in good agreement with flight-test data.
Chaderjian, Neal M.↗
Bimodal Visualization of Industrial X-Ray and Neutron Computed Tomography Data
Advanced manufacturing creates increasingly complex objects with material compositions that are often difficult to characterize by a single modality. Our collaborating domain scientists are going beyond traditional methods by employing both X-ray and neutron computed tomography to obtain complementary representations expected to better resolve material boundaries. However, the use of two modalities creates its own challenges for visualization, requiring either complex adjustments of bimodal transfer functions or the need for multiple views. Together with experts in nondestructive evaluation, we designed a novel interactive bimodal visualization approach to create a combined view of the co-registered X-ray and neutron acquisitions of industrial objects. Using an automatic topological segmentation of the bivariate histogram of X-ray and neutron values as a starting point, the system provides a simple yet effective interface to easily create, explore, and adjust a bimodal visualization. Here, we propose a widget with simple brushing interactions that enables the user to quickly correct the segmented histogram results. Our semiautomated system enables domain experts to intuitively explore large bimodal datasets without the need for either advanced segmentation algorithms or knowledge of visualization techniques. We demonstrate our approach using synthetic examples, industrial phantom objects created to stress bimodal scanning techniques, and real-world objects, and we discuss expert feedback.
image segmentation↗
Fiber-Based Multi-Resolution Imaging and Multidimensional X-ray Diagnostics for Ejecta Dynamics in Plume Surface Interactions
The interaction of a rocket exhaust plume with a particulate-laden surface creates a complex, multiphase flow field that can destabilize the vehicle and damage nearby equipment. This study investigates two methods for capturing the particulate dynamics of plume-surface interaction (PSI): optical fiber-based multi-resolution Mie scattering and multi-dimensional X-ray radiography. Mie scattering was used to track PSI-interacted particles, trace their paths, and measure velocities. While effective for the jet periphery and early PSI stages, the technique becomes limited as the scattering cross-section increases over time due to particle displacement from the soil bed, causing the core to become optically dense and appear as a luminous, opaque region. To address this, X-ray radiography was explored as a complementary method for visualizing the optically dense core. PSI experiments were conducted with both reacting and non-reacting jets to evaluate these approaches across a range of optical and flow parameters. The results demonstrated the capability of the fiber-based multi-resolution imaging system to capture simultaneous fields of view at varying magnifications (1x, 2x, 4x), and the ability of X-ray imaging to penetrate the optically dense plume, revealing flow structures that would otherwise be obscured in scattering-based methods. Data were collected for various PSI parameters, including three different heights above the surface, to analyze the ejecta properties and the plume’s temporal evolution. These results provide the first imaging strategy capable of resolving flow structures over a wide spatial dynamic range while also offering the first visualization of the optically dense core.
Ejecta↗
Visual Brick model authoring tool for building metadata standardization
In this study, the Brick ontology is a unified semantic metadata standard for building assets and their relationships, serving as a key enabler for effective interoperability and automation of building systems and analytics. However, creating a Brick model, in other words, standard semantic metadata based on the Brick ontology for a building dataset, can be a complex task. This paper presents two case studies of the creation of Brick models for real-world residential and commercial building datasets, highlighting the challenges during the Brick model creation process. Additionally, the paper introduces VizBrick, an interactive authoring tool for creating semantic building metadata. VizBrick facilitates the creation of Brick models by providing an intuitive visual interface and interactive capabilities, such as keyword search, automatic mapping suggestions, and recommendations. The use of VizBrick is shown to significantly reduce the time and effort required during the Brick model creation process.
42 ENGINEERING↗
New data on the peculiar galaxy MRK 273
Colorimetric and spectral investigations of Markarian 273 and its three neighbors were performed on the basis of direct ultraviolet blue visual (UBV) and spectral observations with the 2-m Tautenburg telescope and the 6-m telescope of the Special Astrophysical Observatory of the USSR Academy of Sciences. The results obtained suggest that this galaxy is a close system of two objects with active nuclei. The observed straight tail with a thermal emission character is probably the result of the interaction of these galaxies.
Asatrian, A. S.↗
Pictorial communication in virtual and real environments
Papers about the communication between human users and machines in real and synthetic environments are presented. Individual topics addressed include: pictorial communication, distortions in memory for visual displays, cartography and map displays, efficiency of graphical perception, volumetric visualization of 3D data, spatial displays to increase pilot situational awareness, teleoperation of land vehicles, computer graphics system for visualizing spacecraft in orbit, visual display aid for orbital maneuvering, multiaxis control in telemanipulation and vehicle guidance, visual enhancements in pick-and-place tasks, target axis effects under transformed visual-motor mappings, adapting to variable prismatic displacement. Also discussed are: spatial vision within egocentric and exocentric frames of reference, sensory conflict in motion sickness, interactions of form and orientation, perception of geometrical structure from congruence, prediction of three-dimensionality across continuous surfaces, effects of viewpoint in the virtual space of pictures, visual slant underestimation, spatial constraints of stereopsis in video displays, stereoscopic stance perception, paradoxical monocular stereopsis and perspective vergence. (No individual items are abstracted in this volume)
Ellis, Stephen R.↗
Interaction of two glancing, crossing shock waves with a turbulent boundary-layer at various Mach numbers
A preliminary experimental investigation was conducted to study two crossing, glancing shock waves of equal strengths, interacting with the boundary-layer developed on a supersonic wind tunnel wall. This study was performed at several Mach numbers between 2.5 and 4.0. The shock waves were created by fins (shock generators), spanning the tunnel test section, that were set at angles varying from 4 to 12 degrees. The data acquired are wall static pressure measurements, and qualitative information in the form of oil flow and schlieren visualizations. The principle aim is two-fold. First, a fundamental understanding of the physics underlying this flow phenomena is desired. Also, a comprehensive data set is needed for computational fluid dynamic code validation. Results indicate that for small shock generator angles, the boundary-layer remains attached throughout the flow field. However, with increasing shock strengths (increasing generator angles), boundary layer separation does occur and becomes progressively more severe as the generator angles are increased further. The location of the separation, which starts well downstream of the shock crossing point, moves upstream as shock strengths are increased. At the highest generator angles, the separation appears to begin coincident with the generator leading edges and engulfs most of the area between the generators. This phenomena occurs very near the 'unstart' limit for the generators. The wall pressures at the lower generator angles are nominally consistent with the flow geometries (i.e. shock patterns) although significantly affected by the boundary-layer upstream influence. As separation occurs, the wall pressures exhibit a gradient that is mainly axial in direction in the vicinity of the separation. At the limiting conditions the wall pressure gradients are primarily in the axial direction throughout.
Hingst, Warren R.↗
Integrating Radar Image Data with Google Maps
A public Web site has been developed as a method for displaying the multitude of radar imagery collected by NASA s Airborne Synthetic Aperture Radar (AIRSAR) instrument during its 16-year mission. Utilizing NASA s internal AIRSAR site, the new Web site features more sophisticated visualization tools that enable the general public to have access to these images. The site was originally maintained at NASA on six computers: one that held the Oracle database, two that took care of the software for the interactive map, and three that were for the Web site itself. Several tasks were involved in moving this complicated setup to just one computer. First, the AIRSAR database was migrated from Oracle to MySQL. Then the back-end of the AIRSAR Web site was updated in order to access the MySQL database. To do this, a few of the scripts needed to be modified; specifically three Perl scripts that query that database. The database connections were then updated from Oracle to MySQL, numerous syntax errors were corrected, and a query was implemented that replaced one of the stored Oracle procedures. Lastly, the interactive map was designed, implemented, and tested so that users could easily browse and access the radar imagery through the Google Maps interface.
Chapman, Bruce D.↗
Annular flow in rod-bundle: Effect of spacer on disturbance waves
A high-speed camera technique is used to study the effect of spacers on the disturbance waves present in annular two-phase flow within a rod-bundle geometry. Images obtained using a backlight configuration to visualize the spacer-wave interactions at the micro-scale resolution (in time and space) are discussed. This paper also presents additional images obtained using a reflected light configuration which provides new observations of the disturbance waves. These images show the separation effect caused by the spacer on the liquid film in which the size of generated liquid droplets can be controlled by the gas superficial velocity. Furthermore, the data confirm that the spacer breaks the circumferential coherent structures of the waves.
disturbance waves↗
Considering the Lives of Microbes in Microbial Communities
ABSTRACT Over the last decades, sequencing technologies have transformed our ability to investigate the composition and functional capacity of microbial communities. Yet, critical questions remain about these complex systems that cannot be addressed by the bulk, community-averaged data typically provided by sequencing methods. In this Perspective, I propose that future advances in microbiome research will emerge from considering “the lives of microbes”: we need to create methods to explicitly interrogate how microbes exist and interact in native-setting-like microenvironments. This approach includes developing approaches that expose the phenotypic heterogeneity of microbes; exploring the effects of coculture cues on cellular differentiation and metabolite production; and designing visualization systems that capture features of native microbial environments while permitting the nondestructive observation of microbial interactions over space and time with single-cell resolution.
59 BASIC BIOLOGICAL SCIENCES↗