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All sourcesNASA NTRSDOE OSTI
NASA NTRS2004

[Using Molecular Simulations to Understand Complex Nanoscale Dynamic Phenomena in Polymer Solutions]

The first half of the project concentrated on molecular simulation studies of the translocation of model molecules for single-stranded DNA through a nanosized pore. This has resulted in the publication, Translocation of a polymer chain across a nanopore: A Brownian dynamics simulation study, by Pu Tian and Grant D. Smith, JOURNAL OF CHEMICAL PHYSICS VOLUME 119, NUMBER 21 1 DECEMBER 2003, which is attached to this report. In this work we carried out Brownian dynamics simulation studies of the translocation of single polymer chains across a nanosized pore under the driving of an applied field (chemical potential gradient) designed to mimic an electrostatic field. The translocation process can be either dominated by the entropic barrier resulted from restricted motion of flexible polymer chains or by applied forces (or chemical gradient). We focused on the latter case in our studies. Calculation of radius of gyration of the translocating chain at the two opposite sides of the wall shows that the polymer chains are not in equilibrium during the translocation process. Despite this fact, our results show that the one-dimensional diffusion and the nucleation model provide an excellent description of the dependence of average translocation time on the chemical potential gradients, the polymer chain length and the solvent viscosity. In good agreement with experimental results and theoretical predictions, the translocation time distribution of our simple model shows strong non-Gaussian characteristics. It is observed that even for this simple tube-like pore geometry, more than one peak of translocation time distribution can be generated for proper pore diameter and applied field strengths. Both repulsive Weeks-Chandler-Anderson and attractive Lennard-Jones polymer-nanopore interaction were studied. Attraction facilitates the translocation process by shortening the total translocation time and dramatically improve the capturing of polymer chain. The width of the translocation time distribution was found to decrease with increasing temperature, increasing field strength, and decreasing pore diameter.

Smith, Grant↗
NASA NTRS2012

Molecular Technique to Reduce PCR Bias for Deeper Understanding of Microbial Diversity

Current planetary protection policies require that spacecraft targeted to sensitive solar system bodies be assembled and readied for launch in controlled cleanroom environments. A better understanding of the distribution and frequency at which high-risk contaminant microbes are encountered on spacecraft surfaces would significantly aid in assessing the threat of forward contamination. However, despite a growing understanding of the diverse microbial populations present in cleanrooms, less abundant microbial populations are probably not adequately taken into account due to technological limitations. This novel approach encompasses a wide spectrum of microbial species and will represent the true picture of spacecraft cleanroom-associated microbial diversity. All of the current microbial diversity assessment techniques are based on an initial PCR amplification step. However, a number of factors are known to bias PCR amplification and jeopardize the true representation of bacterial diversity. PCR amplification of a minor template appears to be suppressed by the amplification of a more abundant template. It is widely acknowledged among environmental molecular microbiologists that genetic biosignatures identified from an environment only represent the most dominant populations. The technological bottleneck overlooks the presence of the less abundant minority population and may underestimate their role in the ecosystem maintenance. DNA intercalating agents such as propidium monoazide (PMA) covalently bind with DNA molecules upon photolysis using visible light, and make it unavailable for DNA polymerase enzyme during polymerase chain reaction (PCR). Environmental DNA samples will be treated with suboptimum PMA concentration, enough to intercalate with 90 99% of the total DNA. The probability of PMA binding with DNA from abundant bacterial species will be much higher than binding with DNA from less abundant species. This will increase the relative DNA concentration of previously "shadowed" less abundant species available for PCR amplification. These PCR products obtained with and without PMA treatment will then be subjected to downstream diversity analyses such as sequencing and DNA microarray. It is expected that PMA-coupled PCR will amplify the "minority population" and help in understanding microbial diversity spectrum of an environmental sample at a much deeper level. This new protocol aims to overcome the major potential biases faced when analyzing microbial 16S rRNA gene diversity. This study will lead to a technological advancement and a commercial product that will aid microbial ecologists in understanding microbial diversity from various environmental niches. Implementation of this technique may lead to discoveries of novel microbes and their functions in sustenance of the ecosystem.

Vaishampayan, Parag A.↗
DOE OSTI2019

Contributions of extreme and non-extreme precipitation to California precipitation seasonality changes under warming

Changes in seasonality of extreme precipitation have important implications for flood and fire hazards and water resources. Here we explore the contributions of extreme and non-extreme precipitation in the sharpened wet season in California under warming and the underlying mechanisms. Modeling evidence shows that increased extreme precipitation due to enhanced extreme intensity and more extreme days dominates the wetter winter, while decreased non-extreme precipitation due to fewer wet days induces the dryer spring and fall. Moisture budget analysis indicates that increased moisture dominates the extreme precipitation increase in winter, while weakened circulation offsets the moisture increase, resulting in no changes in spring and fall. The sharpened seasonal cycle of extreme precipitation via both dynamic and thermodynamic effects is consistent with the seasonality changes in atmospheric river days and is mainly attributed to the seasonality changes in the number of extreme days rather than the intensity during extreme days.

Dong, Lu↗
DOE OSTI2020

The age–chemical abundance structure of the Galactic disc – II. α -dichotomy and thick disc formation

ABSTRACT We extend our previous work on the age–chemical abundance structure of the Galactic outer disc to the inner disc (4 < r < 8 kpc) based on the SDSS/APOGEE survey. Different from the outer disc, the inner disc stars exhibit a clear bimodal distribution in the [Mg/Fe]–[Fe/H] plane. While a number of scenarios have been proposed in the literature, it remains challenging to recover this bimodal distribution with theoretical models. To this end, we present a chemical evolution model embedding a complex multiphase inner disc formation scenario that matches the observed bimodal [Mg/Fe]–[Fe/H] distribution. In this scenario, the formation of the inner disc is dominated by two main starburst episodes $6\,$Gyr apart with secular, low-level star formation activity in between. In our model, the first starburst occurs at early cosmic times ($t\sim 1\,$ Gyr) and the second one $6\,$ Gyr later at a cosmic time of $t\sim 7\,$ Gyr. Both these starburst episodes are associated with gas accretion events in our model, and are quenched rapidly. The first starburst leads to the formation of the high-α sequence, and the second starburst leads to the formation of the metal-poor low-α sequence. The metal-rich low-α stars, instead, form during the secular evolution phase between the two bursts. Our model shows that the α-dichotomy originates from the rapid suppression of star formation after the first starburst. The two starburst episodes are likely to be responsible for the formation of the geometric thick disc (z >1 kpc), with the old inner thick disc and the young outer thick disc forming during the first and the second starbursts, respectively.

Lian, Jianhui↗
DOE OSTI2024

Fermions, quantum gravity, and holography in two dimensions

We study a model comprising N flavors of Kähler Dirac fermion propagating on a triangulated two-dimensional disk which is constrained to have a negative average bulk curvature. Dirichlet boundary conditions are chosen for the fermions. Quantum fluctuations of the geometry are included by summing over all possible triangulations consistent with these constraints. We show in the limit N → ∞ that the partition function is dominated by a regular triangulation of two-dimensional hyperbolic space. We use strong coupling expansions and Monte Carlo simulation to show that in this limit boundary correlators of the fermions have a power law dependence on boundary separation as one expects from holography. However, we argue that this behavior breaks down for any finite number of massive fields in the thermodynamic limit and quantum fluctuations of the bulk geometry drive the theory into a nonholographic phase. In contrast, for massless fermions, we find evidence that the boundary is conformal even for finite N . This is consistent with theoretical results in quantum Liouville theory. Published by the American Physical Society 2024

Astronomy & Astrophysics↗
DOE OSTI2019

Scale Analysis of Moist Thermodynamics in a Simple Model and the Relationship between Moisture Modes and Gravity Waves

Abstract Observations and theory of convectively coupled equatorial waves suggest that they can be categorized into two distinct groups. Moisture modes are waves whose thermodynamics are governed by moisture fluctuations. The thermodynamics of the gravity wave group, on the other hand, are rooted in buoyancy (temperature) fluctuations. On the basis of scale analysis, it is found that a simple nondimensional parameter—akin to the Rossby number—can explain the processes that lead to the existence of these two groups. This parameter, defined as Nmode, indicates that moisture modes arise when anomalous convection lasts sufficiently long so that dry gravity waves eliminate the temperature anomalies in the convective region, satisfying weak temperature gradient (WTG) balance. This process causes moisture anomalies to dominate the distribution of moist enthalpy (or moist static energy), and hence the evolution of the wave. Conversely, convectively coupled gravity waves arise when anomalous convection eliminates the moisture anomalies more rapidly than dry gravity waves can adjust the troposphere toward WTG balance, causing temperature to govern the moist enthalpy distribution and evolution. Spectral analysis of reanalysis data indicates that slowly propagating waves (cp ~ 3 m s−1) are likely to be moisture modes while fast waves (cp ~ 30 m s−1) exhibit gravity wave behavior, with “mixed moisture–gravity” waves existing in between. While these findings are obtained from a highly idealized framework, it is hypothesized that they can be extended to understand simulations of convectively coupled waves in GCMs and the thermodynamics of more complex phenomena.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Develop and Connect TRISO Failure Analysis and Uncertainty Quantification to Fission Product Release Calculation Capability

The U.S. Department of Energy’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program aims to develop predictive capabilities by applying computational methods to the analysis and design of advanced reactor and fuel cycle systems. This program has been providing engineering-scale support for the development of BISON, a high-fidelity and high-resolution fuel performance tool. Stress-based failure probability has been developed and analyzed to assess the integrity of tri-structural isotropic (TRISO) fuel particles during fuel life cycles. While simple, stress-based approaches to failure probability leveraging the Weibull statistical distribution entails a number of drawbacks when stress concentration occurs near crack tips, including finite element mesh size dependency. In this report, we use an interaction integral approach to the computation of stress intensity factors in functionally graded materials (FGM) for axisymmetric models. The inner pyrolytic carbon (IPyC) cracking induced silicon carbide (SiC) failure is one of the dominated failure modes in TRISO failure analysis. In this study, we consider a crack in the IPyC layer perpendicular to the SiC layer. The interface between these two TRISO layers is considered to be porous, which we simulate considering a transition of mechanical properties over the porous length. These aspects are considered in the computation of stress intensity factor (SIF) from a fracture mechanics approach and compared with the known stress-based failure probability approach.

42 ENGINEERING↗
DOE OSTI2023

Sensitivity analysis of numerical modeling input parameters on floating offshore wind turbine loads

Abstract. Floating wind turbines must withstand a unique and challenging set of loads from the wind and ocean environment. To de-risk development, accurate predictions of these loads are necessary. Uncertainty in modeling predictions leads to larger required safety factors, increasing project costs and the levelized cost of energy. Complex aero-hydro-elastic modeling tools use many input parameters to represent the wind, waves, current, aerodynamic loads, hydrodynamic loads, and structural properties. It is helpful to understand which of these parameters ultimately drives a design. In this work, an ultimate and fatigue-proxy load sensitivity analysis was performed with 35 different input parameters, using an elementary effects approach to identify the most influential parameters for a case study involving the National Renewable Energy Laboratory (NREL) 5 MW baseline wind turbine atop the OC4-DeepCwind semisubmersible during normal operation. The importance of each parameter was evaluated using 14 response quantities of interest across three operational wind speed conditions. The study concludes that turbulent wind velocity standard deviation is the parameter with the strongest sensitivity; this value is important not just for turbine loads, but also for the global system response. The system center of mass in the wind direction is found to have the highest impact on the system rotation and tower loads. The current velocity is found to be the most dominating parameter for the system global motion and consequently the mooring loads. All tested wind turbulence parameters in addition to the standard deviation are also found to be influential. Wave characteristics are influential for some fatigue-proxy loading but do not significantly impact the extreme ultimate loads in these operational load cases. The required number of random seeds for stochastic environmental conditions is considered to ensure that the sensitivities are due to the input parameters and not due to the seed. The required number of analysis points in the parameter space is identified so that the conclusions represent a global sensitivity. The results are specific to the platform, turbine, and choice of parameter ranges, but the demonstrated approach can be applied widely to guide focus in parameter uncertainty.

17 WIND ENERGY↗
NASA NTRS1977

Microphysical processes affecting stratospheric aerosol particles

Physical processes which affect stratospheric aerosol particles include nucleation, condensation, evaporation, coagulation and sedimentation. Quantitative studies of these mechanisms to determine if they can account for some of the observed properties of the aerosol are carried out. It is shown that the altitude range in which nucleation of sulfuric acid-water solution droplets can take place corresponds to that region of the stratosphere where the aerosol is generally found. Since heterogeneous nucleation is the dominant nucleation mechanism, the stratospheric solution droplets are mainly formed on particles which have been mixed up from the troposphere or injected into the stratosphere by volcanoes or meteorites. Particle growth by heteromolecular condensation can account for the observed increase in mixing ratio of large particles in the stratosphere. Coagulation is important in reducing the number of particles smaller than 0.05 micron radius. Growth by condensation, applied to the mixed nature of the particles, shows that available information is consistent with ammonium sulfate being formed by liquid phase chemical reactions in the aerosol particles. The upper altitude limit of the aerosol layer is probably due to the evaporation of sulfuric acid aerosol particles, while the lower limit is due to mixing across the tropopause.

Hamill, P.↗
NASA NTRS1988

Origination, diversity, and extinction metrics essential for analysis of mass biotic crisis events: An example from cretaceous ammonoidea

Traditional mass extinction research has predominently concentrated on statistically demonstrating that mass extinction intervals are significantly above background levels of familial and generic extinction in terms of extinction percentage, extinction rate, and per-taxon extinction rate; mass extinction intervals occur on a set periodicity throughout geologic time, which is estimated to be some 30 MYR in duration. The published literature has given little emphasis to equally important considerations and metrics such as origination rate, standing diversity, and rate of generation of new taxa DURING mass extinction intervals. The extent to which a mass extinction affects the regional or global biota, must ultimately be gauged by taking into consideration both the number of taxa which become extinct at or near the event (stage) boundary, and the number of taxa which are either not affected at all by the extinction or actually evolved during or shortly before/after the extinction interval. These effects can be seen in Cretaceous Ammonoidea (at the genus level), and their combined usage allow better insight into paleobiological dynamics and responses to mass extinction and its affect on this dominant Molluscan organism.

Collom, Christopher J.↗
NASA NTRS1992

Plans for in-flight measurement of hypersonic crossflow transition on the Pegasus launch vehicle

A flight measurements program is underway to obtain flight data for validating stability theory-based transition estimation techniques for crossflow-induced boundary-layer transition at Mach 6-8. A smooth wing glove, designed to enhance crossflow transition and suppress Tollmien-Schlichting (T-S) instabilities, will be mounted on the delta wing of the first stage of the Pegasus booster. The instrumentation package will include 'intelligent' software capable of yielding space and time-correlations obtained through extensive use of fast Fourier transforms (FFTs), 'windowing' and multistage compression as well as a variety of techniques for quality assurance. The flight experiment covers a Mach number range (6 to 8) where low background disturbance data cannot currently be obtained in ground facilities. These flight results will support transition estimation code development for application to supersonic laminar flow control (LFC) and National Aero-Space Plane (NASP) class vehicles in areas where crossflow, rather than T-S waves, is the dominant instability mode.

Bertelrud, Arild↗
NASA NTRS1995

Electron impact ionization rates for interstellar neutral H and He atoms near interplanetary shocks: Ulysses observations

During average solar wind flow conditions at 1 AU, ionization rates of interstellar neutrals that penetrate into the inner heliosphere are dominated by charge exchange with solar wind protons for H atoms, and by photoionization for He atoms. During occurrences of strong, coronal mass ejection (CME)-driven interplanetary shock waves near 1 AU, electron impact ionization can make substantial, if not dominating, contributions to interstellar neutral ionization rates in the regions downstream of the shocks. However, electron impact ionization is expected to be relatively less important with increasing heliocentric distance because of the decrease in electron temperature. Ulysses encountered many CME-driven shocks during its journey to and beyond Jupiter, and in addition, encountered a number of strong corotating interaction region (CIR) shocks. These shocks generally occur only beyond approximately 2 AU. Many of the CIR shocks were very strong rivalling the Earth's bow shock in electron heating. We have compared electron impact ionization rates calculated from electron velocity distributions measured downstream from CIR shocks using the Ulysses SWOOPS experiment to charge-exchange rates calculated from measured proton number fluxes and the photoionization rate estimated from an assumed solar photon spectrum typical of solar maximum conditions. We find that, although normally the ratio of electron-impact ionization rates to charge-exchange (for H) and to photoionization (for He) rates amounts to only about one and a few tens of percent, respectively, downstream of some of the stronger CIR shocks they amount to more than 10% and greater than 100%, respectively.

Feldman, W. C.↗
NASA NTRS2005

A Climatology of Midlatitude Continental Clouds from the ARM SGP Site: Low-Level Cloud Macrophysical, Microphysical, and Radiative Properties - Part I

A record of single-layer and overcast low cloud (stratus) properties has been generated using approximately 4000 hours of data collected from January 1997 to December 2002 at the Atmospheric Radiation Measurement (ARM) Southern Great Plains Central Facility (SCF). The cloud properties include liquid-phase and liquid-dominant, mixed-phase, low cloud macrophysical, microphysical, and radiative properties including cloud-base and -top heights and temperatures, and cloud physical thickness derived from a ground-based radar and lidar pair, and rawinsonde sounding; cloud liquid water path (LWP) and content (LWC), and cloud-droplet effective radius (r(sub e)) and number concentration (N) derived from the macrophysical properties and radiometer data; and cloud optical depth (tau), effective solar transmission (gamma), and cloud/top-of-atmosphere albedos (R(sub cldy)/R(sub TOA)) derived from Eppley precision spectral pyranometer measurements. The cloud properties were analyzed in terms of their seasonal, monthly, and hourly variations. In general, more stratus clouds occur during winter and spring than in summer. Cloud-layer altitudes and physical thicknesses were higher and greater in summer than in winter with averaged physical thicknesses of 0.85 km and 0.73 km for day and night, respectively. The seasonal variations of LWP, LWC, N. tau, R(sub cldy), and R(sub TOA) basically follow the same pattern with maxima and minima during winter and summer, respectively. There is no significant variation in mean r(sub e), however, despite a summertime peak in aerosol loading, Although a considerable degree of variability exists, the 6-yr average values of LWP, LWC, r(sub e), N, tau, gamma, R(sub cldy) and R(sub TOA) are 150 gm(exp -2) (138), 0.245 gm(exp -3) (0.268), 8.7 micrometers (8.5), 213 cm(exp -3) (238), 26.8 (24.8), 0.331, 0.672, 0.563 for daytime (nighttime). A new conceptual model of midlatitude continental low clouds at the ARM SGP site has been developed from this study. The low stratus cloud amount monotonically increases from midnight to early morning (0930 LT), and remains large until around local noon, then declines until 1930 LT when it levels off for the remainder of the night. In the morning, the stratus cloud layer is low, warm, and thick with less LWC, while in the afternoon it is high, cold, and thin with more LWC. Future parts of this series will consider other cloud types and cloud radiative forcing at the ARM SCF.

Dong, Xiquan↗
NASA NTRS2012

Molecular Technique to Understand Deep Microbial Diversity

Current sequencing-based and DNA microarray techniques to study microbial diversity are based on an initial PCR (polymerase chain reaction) amplification step. However, a number of factors are known to bias PCR amplification and jeopardize the true representation of bacterial diversity. PCR amplification of the minor template appears to be suppressed by the exponential amplification of the more abundant template. It is widely acknowledged among environmental molecular microbiologists that genetic biosignatures identified from an environment only represent the most dominant populations. The technological bottleneck has overlooked the presence of the less abundant minority population, and underestimated their role in the ecosystem maintenance. To generate PCR amplicons for subsequent diversity analysis, bacterial l6S rRNA genes are amplified by PCR using universal primers. Two distinct PCR regimes are employed in parallel: one using normal and the other using biotinlabeled universal primers. PCR products obtained with biotin-labeled primers are mixed with streptavidin-labeled magnetic beads and selectively captured in the presence of a magnetic field. Less-abundant DNA templates that fail to amplify in this first round of PCR amplification are subjected to a second round of PCR using normal universal primers. These PCR products are then subjected to downstream diversity analyses such as conventional cloning and sequencing. A second round of PCR amplified the minority population and completed the deep diversity picture of the environmental sample.

Vaishampayan, Parag A.↗
NASA NTRS2011

Aerosol Properties over the Indo-Gangetic Plain: A Mesoscale Perspective from the TIGERZ Experiment

High aerosol loading over the northern Indian subcontinent can result in poor air quality leading to human health consequences and climate perturbations. The international 2008 TIGERZ experiment intensive operational period (IOP) was conducted in the Indo \Gangetic Plain (IGP) around the industrial city of Kanpur (26.51degN, 80.23deg E), India, during the premonsoon (April-June). Aerosol Robotic Network (AERONET) Sun photometers performed frequent measurements of aerosol properties at temporary sites distributed within an area covering 50 sq km around Kanpur to characterize pollution and dust in a region where complex aerosol mixtures and semi \bright surface effects complicate satellite retrieval algorithms. TIGERZ IOP Sun photometers quantified aerosol optical depth (AOD) increases up to 0.10 within and downwind of the city, with urban emissions accounting for 10 C20% of the IGP aerosol loading on deployment days. TIGERZ IOP area \averaged volume size distribution and single scattering albedo retrievals indicated spatially homogeneous, uniformly sized, spectrally absorbing pollution and dust particles. Aerosol absorption and size relationships were used to categorize black carbon and dust as dominant absorbers and to identify a third category in which both black carbon and dust dominate absorption.Moderate Resolution Imaging Spectroradiometer (MODIS) AOD retrievals with the lowest quality assurance (QA > or = 0) flags were biased high with respect to TIGERZ IOP area \averaged measurements. MODIS AOD retrievals with QA 0 had moderate correlation (R(sup 2) = 0.52-69) with the Kanpur AERONET site, whereas retrievals with QA > 0 were limited in number. Mesoscale \distributed Sun photometers quantified temporal and spatial variability of aerosol properties, and these results were used to validate satellite retrievals.

Giles, David M.↗
NASA NTRS2019

2 mm GISMO Observations of the Galactic Center. II. A Nonthermal Filament in the Radio Arc and Compact Sources

We have used the Goddard IRAM 2 Millimeter Observer (GISMO) with the 30 m IRAM telescope to carry out a 2 mm survey of the Galaxy’s central molecular zone. These observations detect thermal emission from cold interstellar medium dust, thermal free–free emission from ionized gas, and nonthermal synchrotron emission from relatively flat-spectrum sources. Archival data sets spanning 3.6 μm–90 cm are used to distinguish different emission mechanisms. After the thermal emission of dust is modeled and subtracted, the remaining 2 mm emission is dominated by free–free emission, with the exception of the brightest nonthermal filament (NTF) that runs through the middle of the bundle of filaments known as the Radio Arc. This is the shortest wavelength at which any NTF has been detected. The GISMO observations clearly trace this NTF over a length of ∼0°. 2, with a mean 2 mm spectral index that is steeper than at longer wavelengths. The 2 mm–6 cm (or 20 cm) spectral index steepens from α ≈ −0.2 to −0.7 as a function distance from the Sickle H II region, suggesting that this region is directly related to the NTF. A number of unresolved (at 21″) 2 mm sources are found nearby. One appears to be thermal dust emission from a molecular cloud that is associated with an enigmatic radio point source whose connection to the Radio Arc is still debated. The morphology and colors at shorter IR wavelengths indicate other 2 mm unresolved sources are likely to be compact H II regions.

Staguhn, Johannes↗
DOE OSTI2022

Experimental Studies and Energy Modeling for Evaluating Performance of Various Deep Wall Retrofits

The Pacific Northwest National Laboratory, Oak Ridge National Laboratory, and the University of Minnesota conducted a three-year, multipart study on residential retrofit wall assemblies. The project, which was funded by the U.S. Department of Energy’s Building Technology Office, aimed to compare a range of residential wall retrofit systems that prioritized affordability, durability, and energy savings potential. The research team identified, constructed, tested, simulated, and analyzed the feasibility and economics of 16 wall retrofit assemblies (14 test configurations and two baseline configurations) that can be applied to the exterior side of existing walls (either with or without the existing cladding). The 16 wall assemblies were installed in an in-situ laboratory environment, to evaluate the ease of construction and study the thermal and hygrothermal performance of the walls. This paper presents the methodology used to evaluate the thermal performance of the walls and discusses the energy modeling results of the study. The results from the experiments were used to calibrate a THERM model of each wall assembly, which was then applied to a whole building using the EnergyPlus 8.6 simulation engine. A residential prototype building was used to extrapolate whole-building energy savings in each U.S. climate zone. To capture the conditions of the largest number of homes in the United States, the most frequent building characteristics (e.g., attic insulation level, window specifications, foundation insulation, etc.) were extracted from ResStock data and applied to the prototype model. Results from the energy modeling showed that the climate zones with the highest potential for retrofit savings are those which are heating-dominated (i.e., Cold and Very Cold climate designations). In these climate zones, heating and cooling energy savings due to the wall retrofits alone ranged from 21.5% to 38.2%.

Nagda, Harshil↗
DOE OSTI2019

Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust

Biological soil crusts (biocrusts) are photosynthetic “hot spots” in deserts and cover ~12% of the Earth’s terrestrial surface, and yet they face an uncertain future given expected shifts in rainfall events. Laboratory wetting of biocrust communities is known to cause a bloom of Firmicutes which rapidly become dominant community members within 2 days after emerging from a sporulated state. We hypothesized that their bacteriophages (phages) would respond to such a dramatic increase in their host’s abundance. In our experiment, wetting caused Firmicutes to bloom and triggered a significant depletion of cyanobacterial diversity. We used genome-resolved metagenomics to link phage to their hosts and found that the bloom of the genus Bacillus correlated with a dramatic increase in the number of Caudovirales phages targeting these diverse spore-formers ( r = 0.762). After 2 days, we observed dramatic reductions in the relative abundances of Bacillus , while the number of Bacillus phages continued to increase, suggestive of a predator-prey relationship. We found predicted auxiliary metabolic genes (AMGs) associated with sporulation in several Caudovirales genomes, suggesting that phages may influence and even benefit from sporulation dynamics in biocrusts. Prophage elements and CRISPR-Cas repeats in Firmicutes metagenome-assembled genomes (MAGs) provide evidence of recent infection events by phages, which were corroborated by mapping viral contigs to their host MAGs. Combined, these findings suggest that the blooming Firmicutes become primary targets for biocrust Caudovirales phages, consistent with the classical “kill-the-winner” hypothesis. This work forms part of an overarching research theme studying the effects of a changing climate on biological soil crust (biocrust) in the Southwestern United States. To our knowledge, this study was the first to characterize bacteriophages in biocrust and offers a view into the ecology of phages in response to a laboratory wetting experiment. The phages identified here represent lineages of Caudovirales , and we found that the dynamics of their interactions with their Firmicutes hosts explain the collapse of a bacterial bloom that was induced by wetting. Moreover, we show that phages carried host-altering metabolic genes and found evidence of proviral infection and CRISPR-Cas repeats within host genomes. Our results suggest that phages exert controls on population density by lysing dominant bacterial hosts and that they further impact biocrust by acquiring host genes for sporulation. Future research should explore how dominant these phages are in other biocrust communities and quantify how much the control and lysis of blooming populations contributes to nutrient cycling in biocrusts.

59 BASIC BIOLOGICAL SCIENCES↗