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At least 1,279 records · Page 71

Error correction in multi-fidelity molecular dynamics simulations using functional uncertainty quantification

We use functional, Fréchet, derivatives to quantify how thermodynamic outputs of a molecular dynamics (MD) simulation depend on the potential used to compute atomic interactions. Our approach quantifies the sensitivity of the quantities of interest with respect to the input functions as opposed to its parameters as is done in typical uncertainty quantification methods. We show that the functional sensitivity of the average potential energy and pressure in isothermal, isochoric MD simulations using Lennard–Jones two-body interactions can be used to accurately predict those properties for other interatomic potentials (with different functional forms) without re-running the simulations. This is demonstrated under three different thermodynamic conditions, namely a crystal at room temperature, a liquid at ambient pressure, and a high pressure liquid. The method provides accurate predictions as long as the change in potential can be reasonably described to first order and does not significantly affect the region in phase space explored by the simulation. The functional uncertainty quantification approach can be used to estimate the uncertainties associated with constitutive models used in the simulation and to correct predictions if a more accurate representation becomes available.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Laser Doppler vibrometry for piezoelectric coefficient ($d_{33}$) measurements in irradiated aluminum nitride

Sensors used for experiments in advanced reactors must survive in harsh environments. Few material systems can be used to construct sensors viable for extreme conditions. Aluminum nitride (AlN) is one such material because it has high thermal stability and radiation resistance and sustains good piezoelectric and dielectric properties at high temperatures. In this work, the piezoelectric coefficient $d_{33}$ of the AlN single-crystal with thermal and irradiation damage was investigated using an indirect method with a laser Doppler vibrometer (LDV). Surface electrodes were deposited on the AlN samples, and the vibration response of the samples to an applied voltage was monitored using the LDV as a function of the excitation frequency. The $d_{33}$ estimation was based on the excitation voltage and the thickness-mode displacement extracted from the LDV measurements. Further, six AlN substrates were irradiated with 8 MeV Al 2+ at three fluences (10 15 , 10 16 , and 10 17 ions/cm 2 ) and two temperatures (300 °C and 500 °C). The $d_{33}$ for the six irradiated samples and one pristine sample were measured, and the measurement uncertainty was estimated based on five repeated tests. All samples were also measured by a commercial piezometer for comparison. The experimental results demonstrate that the piezoelectric coefficients obtained by LDV were about 0.8–1.16 pm/V lower than those obtained by the piezometer. With the compensation of the clamping effect, the corrected LDV values are similar to the piezometer results. Both show similar trends in all samples, which validates the feasibility of the proposed method for $d_{33}$ measurement. Based on the LDV results, the irradiated samples show a 12%–22% decrease in $d_{33}$ compared with the pristine samples. The samples irradiated under the same fluence at a higher temperature (500 °C) demonstrated a lower $d_{33}$ than those at 300 °C. The effect of the retro-reflective tape, sample temperature, and sample size on the $d_{33}$ measurement were also studied.

36 MATERIALS SCIENCE↗

Thermal conductivity of self-ion irradiated nanocrystalline zirconium thin films

Thermomechanical stability and high thermal conductivity are important for nuclear cladding material performance and reliability, which degrade over time under irradiation. The literature suggests nanocrystalline materials as radiation tolerant, but little or no evidence is present from thermal transport perspective. In this study, we irradiated 10 nm grain size zirconium thin films with 800 keV Zr + beam from a 6 MV HVE Tandem accelerator to achieve various doses of 3 × 10 10 to 3.26 × 10 14 ions/cm 2 , corresponding to displacement per atom (dpa) of 2.1 × 10 –4 to 2.28. Transmission electron microscopy showed significant grain growth, texture evolution and oxidation in addition to the creation of displacement defects due to the irradiation. The specimens were co-fabricated with micro-heaters to establish thermal gradients that were mapped using infrared thermometry. An energy balance approach was used to estimate the thermal conductivity of the specimens, as function of irradiation dosage. As a result, up to 32% reduction of thermal conductivity was measured for the sample exposed to a dose of 2.1 dpa (3 × 10 14 ions/cm 2 ).

36 MATERIALS SCIENCE↗

Absorption Correction for Reliable Pair Distribution Functions from Low Energy X-ray Sources

This paper explores the development and testing of a simple absorption correction model for processing powder X-ray diffraction data from Debye−Scherrer geometry laboratory X-ray experiments. This may be used as a preprocessing step before using PDFGETX3 to obtain reliable pair distribution functions (PDFs). Various experimental and theoretical methods for estimating μR were explored, and the most appropriate μR values for correction were identified for different capillary diameters and X-ray beam sizes. We identify operational ranges of μR where a reasonable signal-to-noise ratio is possible after correction. A user-friendly software package, DIFFPY.LABPDFPROC, is presented that can help estimate μR and perform absorption corrections with a rapid calculation for efficient processing.

Absorption↗

Surface Energy Dynamics and Canopy Structural Properties in Intact and Disturbed Forests in the Southern Amazon

The Brazilian Amazon has been a focus of land development with large swaths of forests converted to agriculture. Forest degradation by selective logging and fires has accompanied the agricultural frontier and has resulted in significant impacts on Amazonian ecosystems. Changes in forest structure resulting from forest disturbances have large impacts on the surface energy balance, including on land surface temperature (LST) and evapotranspiration (ET). This study's objective is to assess the effects of forest disturbances on water fluxes and forest structure in a transitional forest site in the Southern Amazon. We used ET and LST products from MODIS and Landsat 8 and GEDI-derived forest structure data to address our research questions. We found that disturbances induced seasonal water stress, more pronounced in croplands/pastures than in forests (differences up to 20% in the dry season), and more pronounced in second-growth and recently burned areas than in logged and intact forests (differences up to 12% in the dry season). Moreover, ET and LST were negatively related, with more consistent relationships across disturbance classes in the dry season (R 2 : 0.41–0.87) than in the wet season (R 2 : 0.18–0.49). Forest and cropland or pasture classes showed contrasting relationships in the dry season. Finally, we found that forest structure exhibited stronger relationships with ET and LST in the most disturbed forests (R 2 : 0.01–0.43) than in the least disturbed forests (R 2 < 0.05). Our findings help to elucidate degraded forests functioning under a changing climate and to improve estimates of water and energy fluxes in Amazonian degraded forests.

54 ENVIRONMENTAL SCIENCES↗

Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria

Abstract The Oxford MinION, the first commercial nanopore sequencer, is also the first to implement molecule-by-molecule real-time selective sequencing or “Read Until”. As DNA transits a MinION nanopore, real-time pore current data can be accessed and analyzed to provide active feedback to that pore. Fragments of interest are sequenced by default, while DNA deemed non-informative is rejected by reversing the pore bias to eject the strand, providing a novel means of background depletion and/or target enrichment. In contrast to the previously published pattern-matching Read Until approach, our RUBRIC method is the first example of real-time selective sequencing where on-line basecalling enables alignment against conventional nucleic acid references to provide the basis for sequence/reject decisions. We evaluate RUBRIC performance across a range of optimizable parameters, apply it to mixed human/bacteria and CRISPR/Cas9-cut samples, and present a generalized model for estimating real-time selection performance as a function of sample composition and computing configuration.

59 BASIC BIOLOGICAL SCIENCES↗

Mid- to long-wave infrared computational spectroscopy with a graphene metasurface modulator

In recent years there has been much interest concerning the development of modulators in the mid- to long-wave infrared, based on emerging materials such as graphene. These have been frequently pursued for optical communications, though also for other specialized applications such as infrared scene projectors. Here we investigate a new application for graphene modulators in the mid- to long-wave infrared. We demonstrate, for the first time, computational spectroscopy in the mid- to long-wave infrared using a graphene-based metasurface modulator. Furthermore, our metasurface device operates at low gate voltage. To demonstrate computational spectroscopy, we provide our algorithm with the measured reflection spectra of the modulator at different gate voltages. We also provide it with the measured reflected light power as a function of the gate voltage. The algorithm then estimates the input spectrum. We show that the reconstructed spectrum is in good agreement with that measured directly by a Fourier transform infrared spectrometer, with a normalized mean-absolute-error (NMAE) of 0.021.

36 MATERIALS SCIENCE↗

Predicting Total Dissolved Gas Travel Time in Hydropower Reservoirs

Large spills at hydropower facilities can produce environmentally unfavorable supersaturated total dissolved gas (TDG) conditions. Enhanced coordination between adjacent hydropower facilities is required when a large, brief spill creates a pulse of TDG that is transported into a downstream reservoir. A premium is placed on quick and simple methods and relationships that can support short-term decision making under dynamic conditions. This paper presents an empirically-based methodology to quantify and assess the relationship between mean hourly river flow and TDG travel time between an upstream hydropower spillway and a downstream dam. The analysis is conducted for reservoirs in the mid-Columbia River system and is limited to summer months when spill events that create high TDG are most common. A two-step filter and cross-correlation procedure is used to isolate high strength TDG events and characterize the time delay between when the TDG event is initiated upstream and when it is detected downstream. Spill flow, powerhouse flow, and TDG measurements are used to develop a bulk parameter estimation of mean TDG time delay as a function of mean river flow. The approach reveals an inverse power law relationship between mean river flow and mean TDG travel time. The relationship provides hydropower operators with a new, simplified decision support tool. In conclusion, the generalized methodology could be applied to other reservoir systems where TDG minimization is a critical management objective.

54 ENVIRONMENTAL SCIENCES↗

Stimulated Brillouin scattering reduction induced by self-focusing for a single laser speckle interacting with an expanding plasma

The origin of the low level of stimulated Brillouin scattering (SBS) observed in laser-plasma experiments carried out with a single laser speckle is investigated by means of three-dimensional simulations and modeling in the limit when the laser beam power P is well above the critical power for ponderomotive self-focusing We find that the order of magnitude of the time averaged reflectivities, together with the temporal and spatial SBS localization observed in our simulations, are correctly reproduced by our modeling. It is observed that, after a short transient stage, SBS reaches a significant level only (i) as long as the incident laser pulse is increasing in amplitude and (ii) in a single self-focused speckle located in the low-density front part of the plasma. In order to describe self-focusing in an inhomogeneous expanding plasma, we have derived a new Lagrangian density describing this process. Using then a variational approach, our model reproduces the position and the peak intensity of the self-focusing hot spot in the front part of the plasma density profile as well as the local density depletion in this hot spot. The knowledge of these parameters then makes it possible to estimate the spatial amplification of SBS as a function of the laser beam power and consequently to explain the experimentally observed SBS reflectivity, considerably reduced with respect to standard theory in the regime of large laser beam power.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Functional differentiability in time-dependent quantum mechanics

In this work, we investigate the functional differentiability of the time-dependent many-body wave function and of derived quantities with respect to time-dependent potentials. For properly chosen Banach spaces of potentials and wave functions, Fréchet differentiability is proven. From this follows an estimate for the difference of two solutions to the time-dependent Schrödinger equation that evolve under the influence of different potentials. Such results can be applied directly to the one-particle density and to bounded operators, and present a rigorous formulation of non-equilibrium linear-response theory where the usual Lehmann representation of the linear-response kernel is not valid. Further, the Fréchet differentiability of the wave function provides a new route towards proving basic properties of time-dependent density-functional theory.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Analysis of the stochastic excitability in the flow chemical reactor

A dynamic model of the thermochemical process in the flow reactor is considered. We study an influence of the random disturbances on the stationary regime of this model. A phenomenon of noise-induced excitability is demonstrated. For the analysis of this phenomenon, a constructive technique based on the stochastic sensitivity functions and confidence domains is applied. It is shown how elaborated technique can be used for the probabilistic analysis of the generation of mixed-mode stochastic oscillations in the flow chemical reactor.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Ionization equilibrium at the transition from valence-band to acceptor-band migration of holes in boron-doped diamond

A quasi-classical model of ionization equilibrium in the p-type diamond between hydrogen-like acceptors (boron atoms which substitute carbon atoms in the crystal lattice) and holes in the valence band (v-band) is proposed. The model is applicable on the insulator side of the insulator–metal concentration phase transition (Mott transition) in p-Dia:B crystals. The densities of the spatial distributions of impurity atoms (acceptors and donors) and of holes in the crystal are considered to be Poissonian, and the fluctuations of their electrostatic potential energy are considered to be Gaussian. The model accounts for the decrease in thermal ionization energy of boron atoms with increasing concentration, as well as for electrostatic fluctuations due to the Coulomb interaction limited to two nearest point charges (impurity ions and holes). The mobility edge of holes in the v-band is assumed to be equal to the sum of the threshold energy for diffusion percolation and the exchange energy of the holes. On the basis of the virial theorem, the temperature T{sub j} is determined, in the vicinity of which the dc band-like conductivity of holes in the v-band is approximately equal to the hopping conductivity of holes via the boron atoms. For compensation ratio (hydrogen-like donor to acceptor concentration ratio) K ≈ 0.15 and temperature T{sub j}, the concentration of “free” holes in the v-band and their jumping (turbulent) drift mobility are calculated. Dependence of the differential energy of thermal ionization of boron atoms (at the temperature 3T{sub j}/2) as a function of their concentration N is calculated. The estimates of the extrapolated into the temperature region close to T{sub j} hopping drift mobility of holes hopping from the boron atoms in the charge states (0) to the boron atoms in the charge states (−1) are given. Calculations based on the model show good agreement with electrical conductivity and Hall effect measurements for p-type diamond with boron atom concentrations in the range from 3 × 10{sup 17} to 3 × 10{sup 20 }cm{sup −3}, i.e., up to the Mott transition. The model uses no fitting parameters.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Joint discrete universality of Hurwitz zeta functions

We obtain a joint discrete universality theorem for Hurwitz zeta functions. Here the parameters of zeta functions and the step of shifts of these functions approximating a given family of analytic functions are connected by some condition of linear independence. Nesterenko's theorem gives an example satisfying this condition. The universality theorem is applied to estimate the number of zeros of a linear combination of Hurwitz zeta functions. Bibliography: 20 titles.

97 MATHEMATICS AND COMPUTING↗

HIERARCHICAL STELLAR STRUCTURES IN THE LOCAL GROUP DWARF GALAXY NGC 6822

We present a comprehensive study of the star cluster population and the hierarchical structure in the clustering of blue stars with ages {approx}<500 Myr in the Local Group dwarf irregular galaxy NGC 6822. Our observational material comprises the most complete optical stellar catalog of the galaxy from imaging with the Suprime-Cam at the 8.2 m Subaru Telescope. We identify 47 distinct star clusters with the application of the nearest-neighbor density method to this catalog for a detection threshold of 3{sigma} above the average stellar density. The size distribution of the detected clusters can be very well approximated by a Gaussian with a peak at {approx}68 pc. The total stellar masses of the clusters are estimated by extrapolating the cumulative observed stellar mass function of all clusters to be in the range 10{sup 3}-10{sup 4} M{sub sun}. Their number distribution is fitted very well by a power law with index {alpha} {approx} 1.5 {+-} 0.7, which is consistent with the cluster mass functions of other Local Group galaxies and the cluster initial mass function. In addition to the detected star clusters of the galaxy, the application of the nearest-neighbor density method for various density thresholds, other than 3{sigma}, enabled the identification of stellar concentrations in various lengthscales. The stellar density maps constructed with this technique provide a direct proof of hierarchically structured stellar concentrations in NGC 6822, in the sense that smaller dense stellar concentrations are located inside larger and looser ones. We illustrate this hierarchy by the so-called dendrogram, or structure tree of the detected stellar structures, which demonstrates that most of the detected structures split up into several substructures over at least three levels. We quantify the hierarchy of these structures with the use of the minimum spanning tree method. We find that structures detected at 1, 2, and 3{sigma} density thresholds are hierarchically constructed with a fractal dimension of D {approx} 1.8. Some of the larger stellar concentrations, particularly in the northern part of the central star-forming portion of the galaxy, coincide with IR-bright complexes previously identified with Spitzer and associated with high column density neutral gas, indicating structures that currently form stars. The morphological hierarchy in stellar clustering, which we observe in NGC 6822, resembles that of the turbulent interstellar matter, suggesting that turbulence on pc and kpc scales has been probably the major agent that regulated clustered star formation in NGC 6822.

79 ASTRONOMY AND ASTROPHYSICS↗

THE HALO OCCUPATION DISTRIBUTION OF SDSS QUASARS

We present an estimate of the projected two-point correlation function (2PCF) of quasars in the Sloan Digital Sky Survey (SDSS) over the full range of one- and two-halo scales, 0.02 h{sup -1} Mpc < r{sub p} < 120 h{sup -1} Mpc. This was achieved by combining data from SDSS DR7 on large scales and Hennawi et al. (with appropriate statistical corrections) on small scales. Our combined clustering sample is the largest spectroscopic quasar clustering sample to date, containing {approx}48, 000 quasars in the redshift range 0.4 {approx}< z {approx}< 2.5 with median redshift 1.4. We interpret these precise 2PCF measurements within the halo occupation distribution (HOD) framework and constrain the occupation functions of central and satellite quasars in dark matter halos. In order to explain the small-scale clustering, the HOD modeling requires that a small fraction of z {approx} 1.4 quasars, f{sub sat} = (7.4 {+-} 1.4) Multiplication-Sign 10{sup -4}, be satellites in dark matter halos. At z {approx} 1.4, the median masses of the host halos of central and satellite quasars are constrained to be M{sub cen} = 4.1{sup +0.3}{sub -0.4} Multiplication-Sign 10{sup 12} h{sup -1} M{sub Sun} and M{sub sat} = 3.6{sup +0.8}{sub -1.0} Multiplication-Sign 10{sup 14} h{sup -1} M{sub Sun }, respectively. To investigate the redshift evolution of the quasar-halo relationship, we also perform HOD modeling of the projected 2PCF measured by Shen et al. for SDSS quasars with median redshift 3.2. We find tentative evidence for an increase in the mass scale of quasar host halos-the inferred median mass of halos hosting central quasars at z {approx} 3.2 is M{sub cen} = 14.1{sup +5.8}{sub -6.9} Multiplication-Sign 10{sup 12} h{sup -1} M{sub Sun }. The cutoff profiles of the mean occupation functions of central quasars reveal that quasar luminosity is more tightly correlated with halo mass at higher redshifts. The average quasar duty cycle around the median host halo mass is inferred to be f{sub q} = 7.3{sup +0.6}{sub -1.5} Multiplication-Sign 10{sup -4} at z {approx} 1.4 and f{sub q} = 8.6{sup +20.4}{sub -7.2} Multiplication-Sign 10{sup -2} at z {approx} 3.2. We discuss the implications of our results for quasar evolution and quasar-galaxy co-evolution.

79 ASTRONOMY AND ASTROPHYSICS↗

EVOLUTION OF THE MASS-METALLICITY RELATIONS IN PASSIVE AND STAR-FORMING GALAXIES FROM SPH-COSMOLOGICAL SIMULATIONS

We present results from SPH-cosmological simulations, including self-consistent modeling of supernova feedback and chemical evolution, of galaxies belonging to two clusters and 12 groups. We reproduce the mass-metallicity (ZM) relation of galaxies classified in two samples according to their star-forming (SF) activity, as parameterized by their specific star formation rate (sSFR), across a redshift range up to z = 2. The overall ZM relation for the composite population evolves according to a redshift-dependent quadratic functional form that is consistent with other empirical estimates, provided that the highest mass bin of the brightest central galaxies is excluded. Its slope shows irrelevant evolution in the passive sample, being steeper in groups than in clusters. However, the subsample of high-mass passive galaxies only is characterized by a steep increase of the slope with redshift, from which it can be inferred that the bulk of the slope evolution of the ZM relation is driven by the more massive passive objects. The scatter of the passive sample is dominated by low-mass galaxies at all redshifts and keeps constant over cosmic times. The mean metallicity is highest in cluster cores and lowest in normal groups, following the same environmental sequence as that previously found in the red sequence building. The ZM relation for the SF sample reveals an increasing scatter with redshift, indicating that it is still being built at early epochs. The SF galaxies make up a tight sequence in the SFR-M{sub *} plane at high redshift, whose scatter increases with time alongside the consolidation of the passive sequence. We also confirm the anti-correlation between sSFR and stellar mass, pointing at a key role of the former in determining the galaxy downsizing, as the most significant means of diagnostics of the star formation efficiency. Likewise, an anti-correlation between sSFR and metallicity can be established for the SF galaxies, while on the contrary more active galaxies in terms of simple SFR are also metal-richer. Finally, the [O/Fe] abundance ratio is presented too: we report a strong increasing evolution with redshift at given mass, especially at z {approx}> 1. The expected increasing trend with mass is recovered when only considering the more massive galaxies. We discuss these results in terms of the mechanisms driving the evolution within the high- and low-mass regimes at different epochs: mergers, feedback-driven outflows, and the intrinsic variation of the star formation efficiency.

79 ASTRONOMY AND ASTROPHYSICS↗

CLASH: Extending galaxy strong lensing to small physical scales with distant sources highly magnified by galaxy cluster members

We present a complex strong lensing system in which a double source is imaged five times by two early-type galaxies. We take advantage in this target of the extraordinary multi-band photometric data set obtained as part of the Cluster Lensing And Supernova survey with Hubble (CLASH) program, complemented by the spectroscopic measurements of the VLT/VIMOS and FORS2 follow-up campaign. We use a photometric redshift value of 3.7 for the source and confirm spectroscopically the membership of the two lenses to the galaxy cluster MACS J1206.2–0847 at redshift 0.44. We exploit the excellent angular resolution of the HST/ACS images to model the two lenses in terms of singular isothermal sphere profiles and derive robust effective velocity dispersion values of 97 ± 3 and 240 ± 6 km s{sup –1}. Interestingly, the total mass distribution of the cluster is also well characterized by using only the local information contained in this lensing system, which is located at a projected distance of more than 300 kpc from the cluster luminosity center. According to our best-fitting lensing and composite stellar population models, the source is magnified by a total factor of 50 and has a luminous mass of approximately (1.0 ± 0.5) × 10{sup 9} M {sub ☉} (assuming a Salpeter stellar initial mass function). By combining the total and luminous mass estimates of the two lenses, we measure luminous over total mass fractions projected within the effective radii of 0.51 ± 0.21 and 0.80 ± 0.32. Remarkably, with these lenses we can extend the analysis of the mass properties of lens early-type galaxies by factors that are approximately two and three times smaller than previously done with regard to, respectively, velocity dispersion and luminous mass. The comparison of the total and luminous quantities of our lenses with those of astrophysical objects with different physical scales, like massive early-type galaxies and dwarf spheroidals, reveals the potential of studies of this kind for improving our knowledge about the internal structure of galaxies. These studies, made possible thanks to the CLASH survey, will allow us to go beyond the current limits posed by the available lens samples in the field.

79 ASTRONOMY AND ASTROPHYSICS↗

Observational requirements for Lyα forest tomographic mapping of large-scale structure at z ∼ 2

The z ≳ 2 Lyα forest traces the underlying dark matter distribution on large scales and, given sufficient sightlines, can be used to create three-dimensional (3D) maps of large-scale structures. We examine the observational requirements to construct such maps and estimate the signal-to-noise as a function of exposure time and sightline density. Sightline densities at z = 2.25 are n {sub los} ≈ [360, 1200, 3300] deg{sup –2} at limiting magnitudes of g = [24.0, 24.5, 25.0], resulting in transverse sightline separations of (d ) ≈ [3.6, 1.9, 1.2] h {sup –1} Mpc, which roughly sets the reconstruction scale. We simulate these reconstructions using mock spectra with realistic noise properties and find that spectra with S/N ≈ 4 per angstrom can be used to generate maps that clearly trace the underlying dark matter at overdensities of ρ/(ρ) ∼ 1. For the VLT/VIMOS spectrograph, exposure times t {sub exp} = [4, 6, 10] hr are sufficient for maps with spatial resolution ε{sub 3D} = [5.0, 3.2, 2.3] h {sup –1} Mpc. Assuming ∼250 h {sup –1} Mpc is probed along the line of sight, 1 deg{sup 2} of survey area would cover a comoving volume of ≈10{sup 6} h {sup –3} Mpc{sup 3} at (z) ∼ 2.3, enabling the efficient mapping of large volumes with 8-10 m telescopes. These maps could be used to study galaxy environments, the topology of large-scale structures at high z, and to detect proto-clusters.

79 ASTRONOMY AND ASTROPHYSICS↗