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At least 1,279 records · Page 71

The role of photorespiration in preventing feedback regulation via ATP synthase in Nicotiana tabacum

Abstract Photorespiration consumes substantial amounts of energy in the forms of adenosine triphosphate (ATP) and reductant making the pathway an important component in leaf energetics. Because of this high reductant demand, photorespiration is proposed to act as a photoprotective electron sink. However, photorespiration consumes more ATP relative to reductant than the C3 cycle meaning increased flux disproportionally increases ATP demand relative to reductant. Here we explore how energetic consumption from photorespiration impacts the flexibility of the light reactions in nicotiana tabacum . Specifically, we demonstrate that decreased photosynthetic efficiency (ϕ II ) at low photorespiratory flux was related to feedback regulation at the chloroplast ATP synthase. Additionally, decreased ϕ II at high photorespiratory flux resulted in the accumulation of photoinhibition at photosystem II centers. These results are contrary to the proposed role of photorespiration as a photoprotective electron sink. Instead, our results suggest a novel role of ATP consumption from photorespiration in maintaining ATP synthase activity, with implications for maintaining energy balance and preventing photodamage that will be critical for plant engineering strategies.

Plant Sciences↗

A Forward Feedback Control Scheme for a Solar Thermochemical Moving Bed Counter-Current Flow Reactor

Abstract Pelletized thermochemical energy storage media has a potential for long-duration energy storage. Production of solid-state energy storage media can be done within a cavity chemical reactor that captures concentrated solar radiation from a solar thermal field. The temperature stability of a solar reactor is directly influenced by the solar flux intercepted. This paper presents a low-order physical model to simulate the dynamic response of temperature inside a tubular plug-flow reactor prototype. Solid granular particles are fed to the reactor from the top whereas a counter-current flowing gas enters the reactor from the bottom. An in-house code was developed to model transient heat transfer of the reactor wall, gas, and moving particles. The model was preliminarily validated with packed beds for different temperature ranges and two gas flowrates. Dynamic response of the reactor temperature is simulated for different input power and gas/particle flowrates. The results show that the system response can be controlled efficiently by utilizing input power (solar flux) as a control parameter. A conventional proportional integral (PI) controller is designed to control the temperature inside the reactor and to maintain it during the solar flux intermittency. The controller parameters are tuned using the Ziegler–Nichols method to ensure optimal system response. The results show that the feedback control model is successful in tracking different reference reactor temperatures within a reasonable settling time of 30 min and eliminated overshoot. This study can be extended to include a hybrid reactor with a multi-input, multi-output variable system.

Energy & Fuels↗

Evaluations of an adaptive planning technique incorporating dose feedback in image-guided radiotherapy of prostate cancer

Purpose: Online image guidance (IG) has been used to effectively correct the setup error and inter-fraction rigid organ motion for prostate cancer. However, planning margins are still necessary to account for uncertainties such as deformation and intra-fraction motion. The purpose of this study is to investigate the effectiveness of an adaptive planning technique incorporating offline dose feedback to manage inter-fraction motion and residuals from online correction. Methods: Repeated helical CT scans from 28 patients were included in the study. The contours of prostate and organs-at-risk (OARs) were delineated on each CT, and online IG was simulated by matching center-of-mass of prostate between treatment CTs and planning CT. A seven beam intensity modulated radiation therapy (IMRT) plan was designed for each patient on planning CT for a total of 15 fractions. Dose distribution at each fraction was evaluated based on actual contours of the target and OARs from that fraction. Cumulative dose up to each fraction was calculated by tracking each voxel based on a deformable registration algorithm. The cumulative dose was compared with the dose from initial plan. If the deviation exceeded the pre-defined threshold, such as 2% of the D{sub 99} to the prostate, an adaptive planning technique called dose compensation was invoked, in which the cumulative dose distribution was fed back to the treatment planning system and the dose deficit was made up through boost radiation in future treatment fractions. The dose compensation was achieved by IMRT inverse planning. Two weekly compensation delivery strategies were simulated: one intended to deliver the boost dose in all future fractions (schedule A) and the other in the following week only (schedule B). The D{sub 99} to prostate and generalized equivalent uniform dose (gEUD) to rectal wall and bladder were computed and compared with those without the dose compensation. Results: If only 2% underdose is allowed at the end of the treatment course, then 11 patients fail. If the same criteria is assessed at the end of each week (every five fractions), then 14 patients fail, with three patients failing the 1st or 2nd week but passing at the end. The average dose deficit from these 14 patients was 4.4%. They improved to 2% after the weekly compensation. Out of these 14 patients who needed dose compensation, ten passed the dose criterion after weekly dose compensation, three patients failed marginally, and one patient still failed the criterion significantly (10% deficit), representing 3.6% of the patient population. A more aggressive compensation frequency (every three fractions) could successfully reduce the dose deficit to the acceptable level for this patient. The average number of required dose compensation re-planning per patient was 0.82 (0.79) per patient for schedule A (B) delivery strategy. The doses to OARs were not significantly different from the online IG only plans without dose compensation. Conclusions: We have demonstrated the effectiveness of offline dose compensation technique in image-guided radiotherapy for prostate cancer. It can effectively account for residual uncertainties which cannot be corrected through online IG. Dose compensation allows further margin reduction and critical organs sparing.

61 RADIATION PROTECTION AND DOSIMETRY↗

Sea surface warming and ocean-to-atmosphere feedback driven by large-scale offshore wind farms under seasonally stratified conditions

Offshore wind farms may induce changes in the upper ocean and near-surface atmosphere through coupled ocean-atmosphere feedbacks. Yet, the role of air-sea interactions mediated by offshore wind farms remains poorly understood. Using fully coupled ocean-atmosphere-wave model simulations for seasonally stratified conditions along the US East Coast, we show that simulated cumulative reductions in wind stress due to large-scale wind farm clusters lead to sea surface warming of 0.3° to 0.4°C and a shallower mixed layer. This warming drives upward heat fluxes, destabilizing the atmospheric boundary layer and enhancing wind stress, which partially offsets wake-induced wind deficits. These wake-ocean interactions influence near-surface meteorology and air-sea fluxes, suggesting that a coupled modeling approach may be necessary for assessing potential oceanographic impacts of offshore wind developments. However, ocean coupling exerts limited influence on winds at turbine-relevant heights or within downstream wakes, resulting in minimal impact on long-term energy. These findings suggest that models without ocean coupling may be adequate for wind energy applications.

17 WIND ENERGY↗

Thermal acclimation of stem respiration implies a weaker carbon-climate feedback

The efflux of carbon dioxide (CO2) from woody stems, a proxy for stem respiration, is a critical carbon flux from ecosystems to the atmosphere, which increases with temperature on short timescales. However, plants acclimate their respiratory response to temperature on longer timescales, potentially weakening the carbon-climate feedback. The magnitude of this acclimation is uncertain despite its importance for predicting future climate change. We develop an optimality-based theory dynamically linking stem respiration with leaf water supply to predict its thermal acclimation. We show that the theory accurately reproduces observations of spatial and seasonal change. We estimate the global value for current annual stem CO2 efflux as 27.4 ± 5.9 PgC. By 2100, incorporating thermal acclimation reduces projected stem respiration without considering acclimation by 24 to 46%, thus reducing land ecosystem carbon emissions.

Zhang, Han↗

Metabolic Feedback Inhibition Influences Metabolite Secretion by the Human Gut Symbiont Bacteroides thetaiotaomicron

ABSTRACT Microbial metabolism and trophic interactions between microbes give rise to complex multispecies communities in microbe-host systems. Bacteroides thetaiotaomicron ( B. theta ) is a human gut symbiont thought to play an important role in maintaining host health. Untargeted nuclear magnetic resonance metabolomics revealed B. theta secretes specific organic acids and amino acids in defined minimal medium. Physiological concentrations of acetate and formate found in the human intestinal tract were shown to cause dose-dependent changes in secretion of metabolites known to play roles in host nutrition and pathogenesis. While secretion fluxes varied, biomass yield was unchanged, suggesting feedback inhibition does not affect metabolic bioenergetics but instead redirects carbon and energy to CO 2 and H 2 . Flux balance analysis modeling showed increased flux through CO 2 -producing reactions under glucose-limiting growth conditions. The metabolic dynamics observed for B. theta , a keystone symbiont organism, underscores the need for metabolic modeling to complement genomic predictions of microbial metabolism to infer mechanisms of microbe-microbe and microbe-host interactions. IMPORTANCE Bacteroides is a highly abundant taxon in the human gut, and Bacteroides thetaiotaomicron ( B. theta ) is a ubiquitous human symbiont that colonizes the host early in development and persists throughout its life span. The phenotypic plasticity of keystone organisms such as B. theta is important to understand in order to predict phenotype(s) and metabolic interactions under changing nutrient conditions such as those that occur in complex gut communities. Our study shows B. theta prioritizes energy conservation and suppresses secretion of “overflow metabolites” such as organic acids and amino acids when concentrations of acetate are high. Secreted metabolites, especially amino acids, can be a source of nutrients or signals for the host or other microbes in the community. Our study suggests that when metabolically stressed by acetate, B. theta stops sharing with its ecological partners.

59 BASIC BIOLOGICAL SCIENCES↗

Permafrost and Climate Change: Carbon Cycle Feedbacks From the Warming Arctic

Rapid Arctic environmental change affects the entire Earth system as thawing permafrost ecosystems release greenhouse gases to the atmosphere. Understanding how much permafrost carbon will be released, over what time frame, and what the relative emissions of carbon dioxide and methane will be is key for understanding the impact on global climate. In addition, the response of vegetation in a warming climate has the potential to offset at least some of the accelerating feedback to the climate from permafrost carbon. Temperature, organic carbon, and ground ice are key regulators for determining the impact of permafrost ecosystems on the global carbon cycle. Together, these encompass services of permafrost relevant to global society as well as to the people living in the region and help to determine the landscape-level response of this region to a changing climate.

54 ENVIRONMENTAL SCIENCES↗

Feedbacks Regulating the Salinization of Coastal Landscapes

The impact of saltwater intrusion on coastal forests and farmland is typically understood as sea-level-driven inundation of a static terrestrial landscape, where ecosystems neither adapt to nor influence saltwater intrusion. Yet recent observations of tree mortality and reduced crop yields have inspired new process-based research into the hydrologic, geomorphic, biotic, and anthropogenic mechanisms involved. We review several negative feedbacks that help stabilize ecosystems in the early stages of salinity stress (e.g., reduced water use and resource competition in surviving trees, soil accretion, and farmland management). However, processes that reduce salinity are often accompanied by increases in hypoxia and other changes that may amplify saltwater intrusion and vegetation shifts after a threshold is exceeded (e.g., subsidence following tree root mortality). This conceptual framework helps explain observed rates of vegetation change that are less than predicted for a static landscape while recognizing the inevitability of large-scale change.

54 ENVIRONMENTAL SCIENCES↗

Real-time Radiative Divertor Feedback Control Development for the NSTX-U Tokamak using a Vacuum Ultraviolet Spectrometer

A radiative divertor technique is planned for the NSTX-U tokamak to prevent excessive erosion and thermal damage of divertor plasma-facing components in H-mode plasma discharges with auxiliary heating up to 12 MW. In the radiative (partially detached) divertor, extrinsically seeded deuterium or impurity gases are used to increase plasma volumetric power and momentum losses. A real-time feedback control of the gas seeding rate is planned for discharges of up to 5 s duration. The outer divertor leg plasma electron temperature Te estimated spectroscopically in real time will be used as a control parameter. A vacuum ultraviolet spectrometer McPherson Model 251 with a fast charged-coupled device detector is developed for temperature monitoring between 5 and 30 eV, based on the delta n=0;1 line intensity ratios of carbon, nitrogen or neon ions lines in the spectral range 300 to 1600 A. A collisional-radiative model-based line intensity ratio will be used for relative calibration. A real-time Te-dependent signal within a characteristic divertor detachment equilibration time of ~ 10 -15 ms is expected.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Search tool plug-in: imploements latent topic feedback

IRIS is a search tool plug-in that is used to implement latent topic feedback for enhancing text navigation. It accepts a list of returned documents from an information retrieval wywtem that is generated from keyword search queries. Data is pulled directly from a topic information database and processed by IRIS to determine the most prominent and relevant topics, along with topic-ngrams, associated with the list of returned documents. User selected topics are then used to expand the query and presumabley refine the search results.

Source record↗

Continous Representation Learning via User Feedback

Representation learning is a deep-learning based technique for extracting features from data for the purpose of machine learning. This requires a large amount of data, on order tens of thousands to millions of samples, to properly teach the deep neural network. This a system for continuous representation learning, where the system may be improved with a small number of additional samples (order 10-100). The unique characteristics of this invention include a human-computer feedback component, where assess the quality of the current representation and then provides a better representation to the system. The system then mixes the new data with old training examples to avoid overfitting and improve overall performance of the system. The model can be exported and shared with other users, and it may be applied to additional images the system hasn't seen before.

Source record↗

Feedback Controllability Components Analysis (FCCA) v1.0

FCCA is a linear dimensionality reduction method that find subspaces of high-dimensional time-series data that are most feedback controllable. The key innovation is to formulate an objective function that quantifies the joint cost of state reconstruction and state regulation that can be evaluated from purely observational data. To do this, it leverages the duality between controllability and observability. We provide analytic results demonstrating the validity of the cost function. We evaluated this method in both synthetic and real neural data (from multiple organisms and brain areas).

Kumar, Ankit↗

Doppler Lidar Measurements of Wind Variability and LLJ Properties in Central Oklahoma during the August 2017 Land–Atmosphere Feedback Experiment

Abstract Low-level jets (LLJs) are an important nocturnal source of wind energy in the U.S. Great Plains. An August 2017 lidar-based field-measurement campaign [the Land–Atmosphere Feedback Experiment (LAFE)] studied LLJs over the central SGP site in Oklahoma and found nearly equal occurrences of the usual southerly jets and postfrontal northeasterly jets—typically rare during this season—for an opportunity to compare the two types of LLJs during this month. Southerly winds were stronger than the northeasterlies by more than 4 m s −1 on average, reflecting a significantly higher frequency of winds stronger than 12 m s −1 . The analysis of this dataset has been expanded to other SGP Doppler-lidar sites to quantify the variability of winds and LLJ properties between sites of different land use. Geographic variations of winds over the study area were noted: on southerly wind nights, the winds blew stronger at the highest, westernmost sites by 2 m s −1 , whereas on the northeasterly flow nights, the easternmost sites had the strongest wind speeds. Lidar measurements at 5 sites during August 2017, contrasted to the 2016–21 summertime data, revealed unusual wind and LLJ conditions. Temporal hodographs using hourly averaged winds at multiple heights revealed unorganized behavior in the turbulent stable boundary layer (SBL) below the jet nose. Above the nose, some nights showed veering qualitatively similar to inertial oscillation (IO) behavior, but at amplitudes much smaller than expected for an IO, whereas other nights showed little veering. Vertical hodographs had a linear shape in the SBL, indicating little directional shear there, and veering above, resulting in a hook-shaped hodograph with height. Significance Statement Doppler-lidar measurements at the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) were used to quantify the variability of winds and low-level jet (LLJ) properties between five sites of different land use and wind regimes across this area. Knowledge of wind and LLJ structure and dynamics is important for many applications, and strong southerly LLJ winds at night are an important resource for wind energy. The analysis of multiyear (2016–21) summertime LLJ parameters provided insight into the LLJ climatology in this part of the Great Plains.

Meteorology & Atmospheric Sciences↗

Sensitivity of Surface Temperature to Oceanic Forcing via q -Flux Green’s Function Experiments. Part II: Feedback Decomposition and Polar Amplification

A large set of Green’s function-type experiments is performed with q-flux forcings mimicking the effects of the ocean heat uptake (OHU) to examine the global surface air temperature (SAT) sensitivities to the location of the forcing. The result of the experiments confirms the earlier notion derived from experiments with different model complexities that the global mean SAT is far more sensitive to the oceanic forcing from high latitudes than the tropics. Remarkably, no matter in which latitude the q-flux forcings are placed, the SAT response is always characterized by a feature of polar amplification, implicating that it is intrinsic to our climate system. Considerable zonal asymmetry is also present in the efficacy of the tropical OHU, with the tropical eastern Pacific being much more efficient than the Indian Ocean and tropical Atlantic in driving global SAT warming by exciting the leading neutral mode of the SAT that projects strongly onto global mean warming. Using a radiative kernel, feedback analysis is also conducted to unravel the underlying processes responsible for the spatial heterogeneity in the global OHU efficacy, the polar amplification structures, and the tropical altruism of sharing the warmth with remote latitudes. Warming “altruism” for a q flux at a given latitude is also investigated in terms of the ratio of the induced remote latitudes versus the directly forced local warming. It is found that the tropics are much more altruistic than higher latitudes because of the high-energy transport efficiency of the Hadley circulation.

54 ENVIRONMENTAL SCIENCES↗

The Southern hemisphere midlatitude circulation response to rapid adjustments and sea surface temperature driven feedbacks

Rapid adjustments – the response of meteorology to external forcing while sea surface temperatures (SST) and sea ice are held fixed – can affect the midlatitude circulation and contribute to long-term forced circulation responses in climate simulations. This study examines rapid adjustments in the Southern hemisphere (SH) circulation using nine models from the Precipitation Driver and Response Model Intercomparison Project (PDRMIP), which perform fixed SST and coupled ocean experiments for five perturbations: a doubling of carbon dioxide (2xCO2), a tripling of methane (3xCH4), a five-fold increase in sulphate aerosol (5xSO4), a ten-fold increase in black carbon aerosol (10xBC) and a 2% increase in solar constant (2%Sol). In the coupled experiments, the SH eddy-driven jet shifts poleward and strengthens for forcings that produce global warming (and vice versa for 5xSO4), with the strongest response found in austral summer. In austral winter, the responses project more strongly onto a change in jet strength. For 10xBC, which induces strong shortwave absorption, the multi-model mean (MMM) rapid adjustment in DJF jet latitude is ~75% of the change in the coupled simulations. For the other forcings, which induce larger SST changes, the effect of SST-mediated feedbacks on the SH circulation is larger than the rapid adjustment. Nevertheless, for these perturbations the magnitude of the MMM jet shift due to the rapid adjustment is still around 25-33% of that in the coupled experiments. The results demonstrate the need to understand the mechanisms for rapid adjustments in the midlatitude circulation, in addition to the effect of changing SSTs.

Wood, Thomas↗

A Vertically Resolved Analysis of Radiative Feedbacks on Moist Static Energy Variance in Tropical Cyclones

Abstract A vertically resolved moist static energy (MSE) variance budget framework is used to diagnose processes associated with the development of tropical cyclones (TCs) in a general circulation model (GCM) under realistic boundary conditions. Previous studies have shown that interactions between radiation and MSE promote TC development. Here, we examine the vertical contributions of radiation and its interactions with MSE by performing several mechanism-denial experiments in which synoptic-scale radiative interactions are suppressed either in the boundary layer or in the free troposphere. Partly suppressing radiative interactions results in a reduction in global TC frequency. However, the magnitude of reduction and structure of the feedback depend on the intensity and structure of the TCs in these mechanism-denial experiments, indicating that both the magnitude and the vertical location of radiative interactions can impact global TC frequency. Using instantaneous 6-hourly outputs, an explicit computation reveals distinct spatial patterns of the advection term: the vertical component is positive in the mid- to upper troposphere, which reflects an upward transport of MSE by deep convection, whereas the horizontal component is positive in the boundary layer. These results illustrate the impact of the vertical distribution of radiative interactions and vertically varied contribution of the advection term in the development of TCs.

Meteorology & Atmospheric Sciences↗

Subsurface Spectroscopy of Thermal Degradation Inside an Inert Plastic Bonded Explosive (PBX) Simulant Using Feedback-Assisted Wavefront Shaping

We characterize the subsurface thermal degradation of an inert analog of high-explosive molecular crystals (Eu:Y(acac) 3 (DPEPO)) (EYAD) embedded inside of a plastic bonded explosive simulant using feedback-assisted wavefront shaping-based fluorescence and Raman spectroscopies. This technique utilizes wavefront shaping to focus pump light inside a heterogeneous material onto a target particle, which significantly improves its spectroscopic signature. We find that embedding the EYAD crystals in the heterogeneous polymer results in improved thermal stability, relative to bare crystal measurements, with the crystal remaining fluorescent to >612 K inside of the heterogeneous material, while the bare crystal’s fluorescence is fully quenched by 500 K. We hypothesize that this improvement is due to the polymer restricting the effects of EYAD melting, which occurs at 400 K and is the primary mechanism for spectroscopic changes in the temperature range explored.

Anderson, Benjamin R.↗

Enhancement of THz generation by feedback-optimized wavefront manipulation

Here, we apply active feedback optimization methods to pyroelectric measurements of a THz signal generated by four wave mixing in air using 1 mJ to 12 mJ, 35 fs laser pulses operating at 1/2 kHz repetition rate. A genetic algorithm, using the THz signal as a figure of merit, determines the voltage settings to a deformable mirror and results in up to a 6 fold improvement in the THz signal compared with settings optimized for the best focus. It is possible to optimize for different THz generation processes using this technique.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗