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At least 1,261 records · Page 70

Annual Research Briefs - 1996, Center for Turbulence Research

Partial contents include: (1) Simulation of jet impingement heat transfer with the k-e-V2 model; (2) A new methodology for turbulence modelers using Direct Numerical Simulation (DNS) database analysis; (3) A particle representation model for the deformation of homogeneous turbulence; (4) Modeling of inhomogeneous compressible turbulence using a two-scale statistical theory; (5) Lewis number effects on partially premixed flames; (6) Conditional moment closure of mixing and reaction in turbulent non-premixed combustion; (7) Dynamic models for LES of turbulent front propagation with a spectral method; (8) Jet noise using large eddy simulation; (9) Towards numerical simulations of trailing-edge aeroacoustics; (10) A model for the onset of vortex breakdown; (11) Compressing an elliptic vortex: transition to turbulence by tumble breakdown; (12) A new method for the adaptive control of vortex-wall interactions; (13) Symmetries in turbulent boundary layer flows; (14) Near-wall models in large eddy simulations of flow behind a backward-facing step; (15) Assessment of the subgrid-scale models at low and high Reynolds numbers; (16) Large-eddy simulations of flow around a NACA 4412 airfoil using unstructured grids; (17) Progress on LES of flow past a circular cylinder; (18) Experimental investigation of flow through an asymmetric plane diffuser; (19) Progress in the large-eddy simulation of an asymmetric plane diffuser; (20) A numerical study of self-similarity in a turbulent plane wake using large-eddy simulation; (21) On the generation of turbulent inflow conditions for boundary layer simulations, and (22) A new class of finite difference schemes.

COMPUTATIONAL FLUID DYNAMICS↗

Chemical vapor deposition of high-quality large-sized MoS 2 crystals on silicon dioxide substrates

Large-sized MoS 2 crystals can be grown on SiO 2 /Si substrates via a two-stage chemical vapor deposition method. The maximum size of MoS 2 crystals can be up to about 305 μm. The growth method can be used to grow other transition metal dichalcogenide crystals and lateral heterojunctions. Additionally, the electron mobility of the MoS 2 crystals can reach ≈30 cm 2 V –1 s –1 , which is comparable to those of exfoliated flakes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Controlling anisotropy in stereolithographically printed polymers

The ability to print three-dimensional objects was first developed in the 1980s and was originally strictly limited to polymeric materials. Through most of the intervening years, the approach has been thought of as a rapid prototyping method. This allowed low volume, high fidelity structures to be quickly fabricated to test things like fit and finish. However, more recently the term additive manufacturing has entered usage to represent the same methods and implies that the field is transitioning to creating finished parts. When we begin to think about these techniques as a real manufacturing approach, then the materials properties achieved during manufacture become much more important. This is true for all materials, as additive manufacturing has grown to encompass structures formed from metals and ceramics, however the bulk of work remains centered on polymers.

36 MATERIALS SCIENCE↗

Renormalization of quantum discord and Bell nonlocality in the XXZ model with Dzyaloshinskii–Moriya interaction

In this paper, we have investigated the dynamical behaviors of the two important quantum correlation witnesses, i.e. geometric quantum discord (GQD) and Bell–CHSH inequality in the XXZ model with DM interaction by employing the quantum renormalization group (QRG) method. The results have shown that the anisotropy suppresses the quantum correlations while the DM interaction can enhance them. Meanwhile, using the QRG method we have studied the quantum phase transition of GQD and obtained two saturated values, which are associated with two different phases: spin-fluid phase and the Néel phase. It is worth mentioning that the block–block correlation is not strong enough to violate the Bell–CHSH inequality in the whole iteration steps. Moreover, the nonanalytic phenomenon and scaling behavior of Bell inequality are discussed in detail. As a byproduct, the conjecture that the exact lower and upper bounds of Bell inequality versus GQD can always be established for this spin system although the given density matrix is a general X state.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A histidine-rich elastin-like polypeptide functions as a quickly detectable and easily purifiable protein fusion tag

Highlights: • A HRELP fusion tag is designed and highly expressed in E. coli. • HRELP fusion tag can be specifically and quickly stained with Pauly's reagent. • HRELP fusion protein can be detected in both cell lysate and SDS-PAGE. • HRELP fusion protein can be purified by pH-triggered ITC. Although many protein fusion tags have been developed for recombinant protein production to improve protein yields or facilitate purification, determining the expression and purification of the fusion protein still remain to be a time-consuming and laborious procedure. In this work, we designed a histidine-rich elastin-like polypeptide (HRELP) fusion tag and found that it could be efficiently expressed in E. coli cells and specifically stained with Pauly's reagent in a couple of minutes post SDS-PAGE analysis. Moreover, in Pauly's reagent-stained polyacrylamide gels, only the bands of HRELP fusion proteins were yellow and could be clearly visualized with little background. Furthermore, both HRELPs and HRELP20-BMP2 fusion protein could be purified by a method of pH shift-mediated inverse transition cycling (ITC). In our opinion, the HRELP established in this study may be considered as a multifunctional protein tag which could make its fusion proteins being quickly detected by Pauly staining and simply purified by pH-triggered ITC in addition to having the potential to sustained release its fusion proteins.

60 APPLIED LIFE SCIENCES↗

Sequence-specific dynamic DNA bending explains mitochondrial TFAM’s dual role in DNA packaging and transcription initiation

Abstract Mitochondrial transcription factor A (TFAM) employs DNA bending to package mitochondrial DNA (mtDNA) into nucleoids and recruit mitochondrial RNA polymerase (POLRMT) at specific promoter sites, light strand promoter (LSP) and heavy strand promoter (HSP). Herein, we characterize the conformational dynamics of TFAM on promoter and non-promoter sequences using single-molecule fluorescence resonance energy transfer (smFRET) and single-molecule protein-induced fluorescence enhancement (smPIFE) methods. The DNA-TFAM complexes dynamically transition between partially and fully bent DNA conformational states. The bending/unbending transition rates and bending stability are DNA sequence-dependent—LSP forms the most stable fully bent complex and the non-specific sequence the least, which correlates with the lifetimes and affinities of TFAM with these DNA sequences. By quantifying the dynamic nature of the DNA-TFAM complexes, our study provides insights into how TFAM acts as a multifunctional protein through the DNA bending states to achieve sequence specificity and fidelity in mitochondrial transcription while performing mtDNA packaging.

59 BASIC BIOLOGICAL SCIENCES↗

Bifunctionality of supported metal hydrodeoxygenation catalysts

The transition to sustainable energy relies on innovative methods to convert biomass-derived compounds into viable biofuels. In this study, the hydrodeoxygenation (HDO) of 6-undecanone is used as a model reaction to screen bifunctional catalysts, where metal sites facilitate hydrogenation and the support promotes deoxygenation, enabling high conversion and selectivity toward desirable alkanes for biofuel production. This reaction is particularly relevant as it represents a critical step in upgrading volatile fatty acids, derived from biomass, into long-chain hydrocarbons suitable for fuel applications. By examining a range of metals (nickel, cobalt, and tin) on different supports, it is revealed that the choice of metal–support combination is critical to catalyst performance. Zeolite beta's 3D microporous structure and adjustable acidity provide an ideal environment for fine-tuning metal–support interactions (MSIs), which are essential for balancing deoxygenation with alkane isomerization, a desirable trait for biofuels.

09 BIOMASS FUELS↗

Designing molecular qubits: computational insights into first-row and group 6 transition metal complexes

In the realm of optically addressable qubits, a previously synthesized and characterized Cr( IV ) pseudo-tetrahedral complex, featuring four strongly donating ligands surrounding the chromium center, has demonstrated potential as a qubit candidate. This study proposes analogs of this complex through a metal substitution strategy, extending the investigation to different complexes based on metal centers selected from first-row and Group 6 transition metals. Computational modeling based on multiconfigurational methods CASPT2 and MC-PDFT was utilized to calculate energy gaps between ground and excited electronic spin states, and zero-field splitting parameters. Simulations were applied to each equilibrium geometry and related deformations based on vibrational modes. All results align with previous experimental findings, but also show that qubits based on V and Ti centers could be more electronically stable than the Cr one, suggesting a lower electronic features dependency from their related geometry. In some cases geometrical deformations provide changes in relative energy gaps between triplet and singlet excited state, that could potentially swap, offering a different initialization process, and some inspiration for ligand design based on such deformations. Additionally, this study identifies an unsynthesized Ti( II ) compound as a promising candidate for molecular qubits. This finding highlights the role of computational multireference methods in the rational design of qubit systems.

Sauza-de la Vega, Arturo [Univ. of Chicago, IL (Un↗

Employing Technology to Enable Remote Research Charrettes as a Method for Engaging Industry and Uncovering Best Practices: A Novel Approach for a Post-COVID-19 World

Methods to collect data in construction engineering and management (CEM) research are evolving, informed by recent technological advancements. One such method is research charrettes that allow effective interactions and knowledge sharing between expert industry practitioners and academic researchers, all colocated in a single venue, enabling rich data collection and live communication. A pivot point in technological evolution occurred with the COVID-19 pandemic, forcing a global shift to remote work. Hence, planned in-person research charrettes had to shift to remote sessions, relying on virtual conferencing platforms and online data collection mechanisms. Technology-enabled charrettes have allowed the authors to collect significantly richer data sets and ensure a more diverse representation of participants, while saving tremendous amounts of time. With the continuing emergence of technological applications, the world might not go back to functioning fully in person. The authors believe remote research charrettes (RRCs) will still be used in a post-COVID-19 world because of their superior performance. This paper builds on a previous publication that described traditional research charrettes as a method to enhance CEM research a decade ago; it offers a significantly updated and improved RRC method based on the knowledge gained from transitioning a dozen in-person charrettes into RRCs. It also presents performance comparisons between RRCs and traditional charrettes by quantifying metrics indicating how RRCs are more time-efficient and cost-saving, harness more participants from more diverse locations, and enable the collection of richer data sets and four times more industry comments and expert feedback. This paper also provides guidance on the integration of technology with traditional research charrettes, hence contributing to the CEM body of knowledge.

42 ENGINEERING↗

Self-trapped exciton and core-valence luminescence in BaF{sub 2} nanoparticles

The influence of the BaF{sub 2} nanoparticle size on the intensity of the self-trapped exciton luminescence and the radiative core-valence transitions is studied by the luminescence spectroscopy methods using synchrotron radiation. The decrease of the self-trapped exciton emission intensity at energies of exciting photons in the range of optical exciton creation (hν ≤ E{sub g}) is less sensitive to the reduction of the nanoparticle sizes than in the case of band-to-band excitation, where excitons are formed by the recombination way. The intensity of the core-valence luminescence shows considerably weaker dependence on the nanoparticle sizes in comparison with the intensity of self-trapped exciton luminescence. The revealed regularities are explained by considering the relationship between nanoparticle size and photoelectron or photohole thermalization length as well as the size of electronic excitations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Nonlinear features of ion acoustic shock waves in dissipative magnetized dusty plasma

The nonlinear propagation of small as well as arbitrary amplitude shocks is investigated in a magnetized dusty plasma consisting of inertia-less Boltzmann distributed electrons, inertial viscous cold ions, and stationary dust grains without dust-charge fluctuations. The effects of dissipation due to viscosity of ions and external magnetic field, on the properties of ion acoustic shock structure, are investigated. It is found that for small amplitude waves, the Korteweg-de Vries-Burgers (KdVB) equation, derived using Reductive Perturbation Method, gives a qualitative behaviour of the transition from oscillatory wave to shock structure. The exact numerical solution for arbitrary amplitude wave differs somehow in the details from the results obtained from KdVB equation. However, the qualitative nature of the two solutions is similar in the sense that a gradual transition from KdV oscillation to shock structure is observed with the increase of the dissipative parameter.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

On the functional dependence of transition-potential coupled cluster

Orbital relaxation of the core region is a primary source of error in the computation of core ionization and core excitation energies. Recently, Transition-Potential Coupled Cluster (TP-CC) methods have been used to explicitly treat orbital relaxation using non-variational molecular orbitals determined by reoccupation of orbitals optimized for a fractional core occupation. The amount of fractional occupation is governed by parameter λ, and recommended values for accurate TP-CCSD and XTP-CCSD computations of carbon, nitrogen, oxygen, and fluorine K edges were previously determined. Herein, we explore the performance of several density functionals for generating the fractionally occupied orbitals used in TP-CCSD. These functionals include HF, BP86, BH&HLYP, B3LYP, M06-2X, and ωB97m-V. The fractionally occupied orbitals computed across the various functionals were subsequently employed as the initial orbitals for our TP-CCSD calculations of organic K-edge x-ray absorption and photoelectron spectra. Regardless of the functional used to generate the fractionally occupied orbitals, the TP-CCSD calculations yield accurate and comparable core ionization energies, core excitation energies, and oscillator strengths.

Coupled-cluster methods↗

Dynamical measurements of the interior structure of exoplanets

Giant gaseous planets often reside on orbits in sufficient proximity to their host stars for the planetary quadrupole gravitational field to become non-negligible. In presence of an additional planetary companion, a precise characterization of the system's orbital state can yield meaningful constraints on the transiting planet's interior structure. However, such methods can require a very specific type of system. This paper explores the dynamic range of applicability of these methods and shows that interior structure calculations are possible for a wide array of orbital architectures. The HAT-P-13 system is used as a case study, and the implications of perturbations arising from a third distant companion on the feasibility of an interior calculation are discussed. We find that the method discussed here is likely to be useful in studying other planetary systems, allowing the possibility of an expanded survey of the interiors of exoplanets.

79 ASTRONOMY AND ASTROPHYSICS↗

Spectro-thermometry of M dwarfs and their candidate planets: Too hot, too cool, or just right?

We use moderate-resolution spectra of nearby late K and M dwarf stars with parallaxes and interferometrically determined radii to refine their effective temperatures, luminosities, and metallicities. We use these revised values to calibrate spectroscopic techniques to infer the fundamental parameters of more distant late-type dwarf stars. We demonstrate that, after masking out poorly modeled regions, the newest version of the PHOENIX atmosphere models accurately reproduce temperatures derived bolometrically. We apply methods to late-type hosts of transiting planet candidates in the Kepler field, and calculate effective temperature, radius, mass, and luminosity with typical errors of 57 K, 7%, 11%, and 13%, respectively. We find systematic offsets between our values and those from previous analyses of the same stars, which we attribute to differences in atmospheric models utilized for each study. We investigate which of the planets in this sample are likely to orbit in the circumstellar habitable zone. We determine that four candidate planets (KOI 854.01, 1298.02, 1686.01, and 2992.01) are inside of or within 1σ of a conservative definition of the habitable zone, but that several planets identified by previous analyses are not (e.g., KOI 1422.02 and KOI 2626.01). Only one of the four habitable-zone planets is Earth sized, suggesting a downward revision in the occurrence of such planets around M dwarfs. These findings highlight the importance of measuring accurate stellar parameters when deriving parameters of their orbiting planets.

79 ASTRONOMY AND ASTROPHYSICS↗

IMPROVED V II log(gf) VALUES, HYPERFINE STRUCTURE CONSTANTS, AND ABUNDANCE DETERMINATIONS IN THE PHOTOSPHERES OF THE SUN AND METAL-POOR STAR HD 84937

New experimental absolute atomic transition probabilities are reported for 203 lines of V II. Branching fractions are measured from spectra recorded using a Fourier transform spectrometer and an echelle spectrometer. The branching fractions are normalized with radiative lifetime measurements to determine the new transition probabilities. Generally good agreement is found between this work and previously reported V II transition probabilities. Two spectrometers, independent radiometric calibration methods, and independent data analysis routines enable a reduction in systematic uncertainties, in particular those due to optical depth errors. In addition, new hyperfine structure constants are measured for selected levels by least squares fitting line profiles in the FTS spectra. The new V II data are applied to high resolution visible and UV spectra of the Sun and metal-poor star HD 84937 to determine new, more accurate V abundances. Lines covering a range of wavelength and excitation potential are used to search for non-LTE effects. Very good agreement is found between our new solar photospheric V abundance, log ε(V) = 3.95 from 15 V II lines, and the solar-system meteoritic value. In HD 84937, we derive [V/H] = –2.08 from 68 lines, leading to a value of [V/Fe] = 0.24.

79 ASTRONOMY AND ASTROPHYSICS↗

Quantum algorithms for disordered physics

We show how a quantum computer may efficiently simulate a disordered Hamiltonian, by incorporating a pseudo-random number generator directly into the time evolution circuit. This technique is applied to quantum simulation of few-body disordered systems in the large volume limit; in particular, Anderson localization. The method requires a number of (error corrected) qubits proportional to the logarithm of the volume of the system, and each time evolution step requires a number of gates polylogarithmic in the volume. We simulate the method to observe the metal-insulator transition on a three-dimensional lattice. Additionally, we demonstrate the algorithm on a one-dimensional lattice, using physical quantum processors.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Strong-disorder renormalization group for periodically driven systems

Quenched randomness can lead to robust nonequilibrium phases of matter in periodically driven (Floquet) systems. Analyzing transitions between such dynamical phases requires a method capable of treating the twin complexities of disorder and discrete time-translation symmetry. We introduce a real-space renormalization group approach, asymptotically exact in the strong-disorder limit, and exemplify its use on the periodically driven interacting quantum Ising model. As a result, we analyze the universal physics near the critical lines and multicritical point of this model, and demonstrate the robustness of our results to the inclusion of weak interactions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗