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At least 1,261 records · Page 70

Implosion dynamics of triple-nozzle gas-puff z pinches on COBRA

Experiments on the 1-MA, 220-ns COBRA generator at Cornell University were conducted to provide detailed measurements of structured cylindrical gas-puff z pinches. In the experiments, a 7 cm diameter triple-nozzle gas valve assembly with concentric outer and inner annular nozzles and a central gas jet initialize the z-pinch load with various working gases, radial density profiles, and externally applied axial magnetic fields. Planar laser-induced fluorescence provides a measure of the initial neutral gas density of the load, while three-frame laser shearing interferometry and multi-frame extreme ultraviolet (XUV) cameras reveal the formation and propagation of a magneto-Rayleigh–Taylor (MRT) unstable shock layer. Implosion trajectories are compared to simple, experimentally informed models and found to be in good agreement. Differences in the structure of the accelerating plasma sheath and evolution of the MRT instability are observed for different gas species and axial magnetic field strengths, correlating with differences in pinch uniformity and x-ray emission. Here, the average instability growth is compared to linear MRT theory predictions using the instantaneous acceleration of the best-fit implosion models and characteristic instability wavelength, with the effective Atwood number and seed perturbation size as fit parameters. For high density argon center jets, ionization prior to the arrival of the imploding plasma sheath suggests a heating mechanism consistent with photoionization by XUV self-emission.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Design Principles to Govern Electrode Fabrication for the Lithium Trivanadate Cathode

A full depth of discharge mathematical model for the lithium trivanadate cathode, considering lithiation of the layered α-phase, phase change, and lithiation of the rock-salt like β-phase at lower potentials, is developed. The coupled electrode-scale and crystal-scale model is fit to electrochemical data, and additionally validated with operando EDXRD. There is good agreement between the simulated and measured spatial variation of the volume fraction of the β-phase. This mathematical model is used to guide electrode fabrication, accounting for both ionic and electronic transport effects. Values of three design parameters—electrode thickness, porosity, and volume fraction of conductor—are identified, and the sensitivity of the energy density to these design parameters is quantified. The model is also used to investigate electrode design to create electrodes that deliver the maximum achievable energy density under the constraint that the α to β-phase transition is avoided, since phase change has been demonstrated to reduce cycle life. The energy density sacrificed to avoid phase change decreases at higher discharge rates, but the target values for electrode fabrication remain the same as those when optimizing the electrode for the full depth of discharge.

25 ENERGY STORAGE↗

Advanced Solution Methods for Microkinetic Models of Catalytic Reactions: A Methanol Synthesis Case Study

Microkinetic models, combined with experimentally measured reaction rates and orders, play a key role in elucidating detailed reaction mechanisms in heterogeneous catalysis and have typically been solved as systems of ordinary differential equations. In this work, we demonstrate a new approach to fitting those models to experimental data. For the specific example treated here, by reformulating a typical microkinetic model for a continuous stirred tank reactor to a system of nonlinear equations, we achieved a 1000-fold increase in solution speed. The reduced computational cost allows a more systematic search of the parameter space, leading to better fits to the available experimental data. We applied this approach to the problem of methanol synthesis by CO/CO2 hydrogenation over a supported-Cu catalyst, an important catalytic reaction with a large industrial interest and potential for large-scale CO2 chemical fixation.

Environmental Molecular Sciences Laboratory↗

Isotherm, Kinetic, Process Modeling, and Techno-Economic Analysis of a Diamine-Appended Metal-Organic Framework for CO 2 Capture Using Fixed Bed Contactors

In this report, diamine-appended metal-organic frameworks exhibiting step-shaped CO 2 adsorption are exceptional candidates for energy-efficient carbon capture. However, there are few studies examining their performance in real-world capture scenarios, in part due to the challenge inherent in modeling their CO 2 uptake behavior. Here, we develop a dual-site Sips model to fit experimental CO 2 adsorption data for dmpn-Mg 2 (dobpdc) (dmpn = 2,2-dimethyl-1,3-diaminopropane; dobpdc 4- = 4,4'-dioxidobiphenyl-3,3'-dicarboxylate) and develop a linear driving force model for the adsorption kinetics based on available experimental data. These models are used to develop a dynamic, fixed bed, nonisothermal contactor model using shaped particles of the material, which is validated with experimental breakthrough data. We also examine the effects of the high heat of adsorption of the material on CO 2 uptake performance and find that heat removal is essential to maximize capture performance. We finally investigate "basic"(no bed cooling during adsorption) and "modified"(bed cooling during adsorption) temperature swing adsorption (TSA) processes using dmpn-Mg 2 (dobpdc), and their process economics are compared to a state-of-the-art monoethanolamine (MEA) capture system with and without heat recovery. In the absence of heat recovery, the adsorbent systems are more costly than established technology. However, with 85% heat recovery, both adsorbent-based TSA processes are projected to cost less than the MEA system. This work highlights that thermal management is vital for implementation of dmpn-Mg 2 (dobpdc) as a viable CO 2 capture technology. Investigation of other contactor technologies that can provide unique ways to manage system heat represent promising future areas of study.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

PM 2.5 Is Insufficient to Explain Personal PAH Exposure

To understand how chemical exposure can impact health, researchers need tools that capture the complexities of personal chemical exposure. In practice, fine particulate matter (PM 2.5 ) air quality index (AQI) data from outdoor stationary monitors and Hazard Mapping System (HMS) smoke density data from satellites are often used as proxies for personal chemical exposure, but do not capture total chemical exposure. Silicone wristbands can quantify more individualized exposure data than stationary air monitors or smoke satellites. However, it is not understood how these proxy measurements compare to chemical data measured from wristbands. In this study, participants wore daily wristbands, carried a phone that recorded locations, and answered daily questionnaires for a 7-day period in multiple seasons. We gathered publicly available daily PM 2.5 AQI data and HMS data. We analyzed wristbands for 94 organic chemicals, including 53 polycyclic aromatic hydrocarbons. Wristband chemical detections and concentrations, behavioral variables (e.g., time spent indoors), and environmental conditions (e.g., PM 2.5 AQI) significantly differed between seasons. Machine learning models were fit to predict personal chemical exposure using PM 2.5 AQI only, HMS only, and a multivariate feature set including PM 2.5 AQI, HMS, and other environmental and behavioral information. On average, the multivariate models increased predictive accuracy by approximately 70% compared to either the AQI model or the HMS model for all chemicals modeled. This study provides evidence that PM 2.5 AQI data alone or HMS data alone is insufficient to explain personal chemical exposures. Our results identify additional key predictors of personal chemical exposure.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

A Kriging-Based Approach to Autonomous Experimentation with Applications to X-Ray Scattering

Abstract Modern scientific instruments are acquiring data at ever-increasing rates, leading to an exponential increase in the size of data sets. Taking full advantage of these acquisition rates will require corresponding advancements in the speed and efficiency of data analytics and experimental control. A significant step forward would come from automatic decision-making methods that enable scientific instruments to autonomously explore scientific problems—that is, to intelligently explore parameter spaces without human intervention, selecting high-value measurements to perform based on the continually growing experimental data set. Here, we develop such an autonomous decision-making algorithm that is physics-agnostic, generalizable, and operates in an abstract multi-dimensional parameter space. Our approach relies on constructing a surrogate model that fits and interpolates the available experimental data, and is continuously refined as more data is gathered. The distribution and correlation of the data is used to generate a corresponding uncertainty across the surrogate model. By suggesting follow-up measurements in regions of greatest uncertainty, the algorithm maximally increases knowledge with each added measurement. This procedure is applied repeatedly, with the algorithm iteratively reducing model error and thus efficiently sampling the parameter space with each new measurement that it requests. We validate the method using synthetic data, demonstrating that it converges to faithful replica of test functions more rapidly than competing methods, and demonstrate the viability of the approach in an experimental context by using it to direct autonomous small-angle (SAXS) and grazing-incidence small-angle (GISAXS) x-ray scattering experiments.

36 MATERIALS SCIENCE↗

Quantifying the Diversification of Hepatitis C Virus (HCV) during Primary Infection: Estimates of the In Vivo Mutation Rate

Hepatitis C virus (HCV) is present in the host with multiple variants generated by its error prone RNA-dependent RNA polymerase. Little is known about the initial viral diversification and the viral life cycle processes that influence diversity. We studied the diversification of HCV during acute infection in 17 plasma donors, with frequent sampling early in infection. To analyze these data, we developed a new stochastic model of the HCV life cycle. We found that the accumulation of mutations is surprisingly slow: at 30 days, the viral population on average is still 46% identical to its transmitted viral genome. Fitting the model to the sequence data, we estimate the median in vivo viral mutation rate is 2.561025 mutations per nucleotide per genome replication (range 1.6–6.261025 ), about 5-fold lower than previous estimates. To confirm these results we analyzed the frequency of stop codons (N = 10) among all possible non-sense mutation targets (M = 898,335), and found a mutation rate of 2.8–3.261025 , consistent with the estimate from the dynamical model. The slow accumulation of mutations is consistent with slow turnover of infected cells and replication complexes within infected cells. This slow turnover is also inferred from the viral load kinetics. Our estimated mutation rate, which is similar to that of other RNA viruses (e.g., HIV and influenza), is also compatible with the accumulation of substitutions seen in HCV at the population level. Our model identifies the relevant processes (long-lived cells and slow turnover of replication complexes) and parameters involved in determining the rate of HCV diversification.

60 APPLIED LIFE SCIENCES↗

Using Bayesian Methodology to Estimate Liquefied Natural Gas Leak Frequencies

This analysis provides estimates on the leak frequencies of nine components found in liquefied natural gas (LNG) facilities. Data was taken from a variety of sources, with 25 different data sets included in the analysis. A hierarchical Bayesian model was used that assumes that the log leak frequency follows a normal distribution and the logarithm of the mean of this normal distribution is a linear function of the logarithm of the fractional leak area. This type of model uses uninformed prior distributions that are updated with applicable data. Separate models are fit for each component listed. Five order-of-magnitude fractional leak areas are considered, based on the flow area of the component. Three types of supporting analyses were performed: sensitivity of the model to the data set used, sensitivity of the leak frequency estimates to differences in the model structure or prior distributions, and sufficiency of sample sized used for convergence. Recommended leak frequency distributions for all component types and leak sizes are given. These leak frequency predictions can be used for quantitative risk assessments in the future.

03 NATURAL GAS↗

Multi-wavelength Spectral Analysis of Ellerman Bombs Observed by FISS and IRIS

Ellerman bombs (EBs) are a kind of solar activity that is suggested to occur in the lower solar atmosphere. Recent observations using the Interface Region Imaging Spectrograph (IRIS) show connections between EBs and IRIS bombs (IBs), which imply that EBs might be heated to a much higher temperature (8 × 10{sup 4} K) than previous results. Here we perform a spectral analysis of EBs simultaneously observed by the Fast Imaging Solar Spectrograph and IRIS. The observational results show clear evidence of heating in the lower atmosphere, indicated by the wing enhancement in H α , Ca ii 8542 Å, and Mg ii triplet lines and also by brightenings in images of the 1700 Å and 2832 Å ultraviolet continuum channels. Additionally, the intensity of the Mg ii triplet line is correlated with that of H α when an EB occurs, suggesting the possibility of using the triplet as an alternative way to identify EBs. However, we do not find any signal in IRIS hotter lines (C ii and Si iv). For further analysis, we employ a two-cloud model to fit the two chromospheric lines (H α and Ca ii 8542 Å) simultaneously, and obtain a temperature enhancement of 2300 K for a strong EB. This temperature is among the highest of previous modeling results, albeit still insufficient to produce IB signatures at ultraviolet wavelengths.

79 ASTRONOMY AND ASTROPHYSICS↗

The diffuse galactic far-ultraviolet sky

We present an all-sky map of the diffuse Galactic far ultraviolet (1344-1786 Å) background using Galaxy Evolution Explorer data, covering 65% of the sky with 11.79 arcmin{sup 2} pixels. We investigate the dependence of the background on Galactic coordinates, finding that a standard cosecant model of intensity is not a valid fit. Furthermore, we compare our map to Galactic all-sky maps of 100 μm emission, N {sub H} {sub I} column, and Hα intensity. We measure a consistent low level far-UV (FUV) intensity at zero points for other Galactic quantities, indicating a 300 photons cm{sup –2} s{sup –1} sr{sup –1} Å{sup –1} non-scattered isotropic component to the diffuse FUV. There is also a linear relationship between FUV and 100 μm emission below 100 μm values of 8 MJy sr{sup –1}. We find a similar linear relationship between FUV and N {sub H} {sub I} below 10{sup 21} cm{sup –2}. The relationship between FUV and Hα intensity has no such constant cutoff. For all Galactic quantities, the slope of the linear portion of the relationship decreases with Galactic latitude. A modified cosecant model, taking into account dust scattering asymmetry and albedo, is able to accurately fit the diffuse FUV at latitudes above 20°. The best fit model indicates an albedo, a, of 0.62 ± 0.04 and a scattering asymmetry function, g, of 0.78 ± 0.05. Deviations from the model fit may indicate regions of excess FUV emission from fluorescence or shock fronts, while low latitude regions with depressed FUV emission are likely the result of self-shielding dusty clouds.

79 ASTRONOMY AND ASTROPHYSICS↗

Kinetic isotope effects significantly influence intracellular metabolite 13 C labeling patterns and flux determination

Rigorous mathematical modeling of carbon-labeling experiments allows estimation of fluxes through the pathways of central carbon metabolism, yielding powerful information for basic scientific studies as well as for a wide range of applications. However, the mathematical models that have been developed for flux determination from 13 C labeling data have commonly neglected the influence of kinetic isotope effects on the distribution of 13 C label in intracellular metabolites, as these effects have often been assumed to be inconsequential. We have used measurements of the 13 C isotope effects on the pyruvate dehydrogenase enzyme from the literature to model isotopic fractionation at the pyruvate node and quantify the modeling errors expected to result from the assumption that isotope effects are negligible. We show that under some conditions kinetic isotope effects have a significant impact on the 13 C labeling patterns of intracellular metabolites, and the errors associated with neglecting isotope effects in 13 C-metabolic flux analysis models can be comparable in size to measurement errors associated with GC–MS. Thus, kinetic isotope effects must be considered in any rigorous assessment of errors in 13 C labeling data, goodness-of-fit between model and data, confidence intervals of estimated metabolic fluxes, and statistical significance of differences between estimated metabolic flux distributions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A measurement of the high-mass $\tau \overline{\tau}$ production cross-section at $\sqrt{s}=13$ TeV with the ATLAS detector and constraints on new particles and couplings

The production cross-section of high-mass τ-lepton pairs is measured as a function of the dilepton visible invariant mass, using 140 fb −1 of $\sqrt{s}=13$ TeV proton-proton collision data recorded with the ATLAS detector at the Large Hadron Collider. The measurement agrees with the predictions of the Standard Model. A fit to the invariant mass distribution is performed as a function of b-jet multiplicity, to constrain the non-resonant production of new particles described by an effective field theory or in models containing leptoquarks or Z′ bosons that couple preferentially to third-generation fermions. The constraints on new particles improve on previous results, and the constraints on effective operators include those affecting the anomalous magnetic moment of the τ-lepton.

beyond Standard Model↗

Simultaneous parameter optimization of x-ray and neutron reflectivity data using genetic algorithms

X-ray and neutron reflectivity are two non destructive techniques which provide a wealth of information on thickness, structure and interracial properties in nanometer length scale. Combination of X-ray and neutron reflectivity is well suited for obtaining physical parameters of nanostructured thin films and superlattices. Neutrons provide a different contrast between the elements than X-rays and are also sensitive to the magnetization depth profile in thin films and superlattices. The real space information is extracted by fitting a model for the structure of the thin film sample in reflectometry experiments. We have applied a Genetic Algorithms technique to extract depth dependent structure and magnetic in thin film and multilayer systems by simultaneously fitting X-ray and neutron reflectivity data.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

SU-F-J-199: Predictive Models for Cone Beam CT-Based Online Verification of Pencil Beam Scanning Proton Therapy

Purpose: To utilize online CBCT scans to develop models for predicting DVH metrics in proton therapy of head and neck tumors. Methods: Nine patients with locally advanced oropharyngeal cancer were retrospectively selected in this study. Deformable image registration was applied to the simulation CT, target volumes, and organs at risk (OARs) contours onto each weekly CBCT scan. Intensity modulated proton therapy (IMPT) treatment plans were created on the simulation CT and forward calculated onto each corrected CBCT scan. Thirty six potentially predictive metrics were extracted from each corrected CBCT. These features include minimum/maximum/mean over and under-ranges at the proximal and distal surface of PTV volumes, and geometrical and water equivalent distance between PTV and each OARs. Principal component analysis (PCA) was used to reduce the dimension of the extracted features. Three principal components were found to account for over 90% of variances in those features. Datasets from eight patients were used to train a machine learning model to fit these principal components with DVH metrics (dose to 95% and 5% of PTV, mean dose or max dose to OARs) from the forward calculated dose on each corrected CBCT. The accuracy of this model was verified on the datasets from the 9th patient. Results: The predicted changes of DVH metrics from the model were in good agreement with actual values calculated on corrected CBCT images. Median differences were within 1 Gy for most DVH metrics except for larynx and constrictor mean dose. However, a large spread of the differences was observed, indicating additional training datasets and predictive features are needed to improve the model. Conclusion: Intensity corrected CBCT scans hold the potential to be used for online verification of proton therapy and prediction of delivered dose distributions.

60 APPLIED LIFE SCIENCES↗

A consensus mathematical model of vaccine-induced antibody dynamics for multiple vaccine platforms and pathogens

Introduction: Vaccine platforms used in successful, licensed vaccines have varied among pathogens. However, antibody level is still the main clinical correlate of protection in most approved vaccines. Decisions as to the best vaccine platform to pursue for a given pathogen may be informed through improved understanding of the process of antibody generation and its temporal dynamics, as well as the relationship between these processes and the type of vaccine. Methods: We have analyzed the dynamics of antibody generation for different vaccine platforms against diverse pathogens, and developed a consensus mathematical model that captures antibody dynamics across these diverse systems. Initially, the model was fitted to a rich dataset of antibody and immune cell concentrations in a SARS-CoV-2 vaccine experiment. We then used concepts from machine learning, such as transfer learning, to apply the same model to a variety of systems, involving different pathogens, vaccine platforms, and booster dose use/timing, fixing most parameter values relating to the dynamics of the immune system. Results: The model includes B cell proliferation and differentiation, as well as the generation of plasma cells, which secrete large amounts of antibody, and memory B cells. Overall, the model describes antibody generation in all systems tested well and shows that the main differences across platforms are related to the dynamics of antigen presentation. Discussion: This model can be used to predict antibody generation in pairs of vaccine platform/pathogen, allowing for the use of in silico results to narrow down experimental burden in vaccine development.

59 BASIC BIOLOGICAL SCIENCES↗

Land surface model parameter optimisation using in situ flux data: comparison of gradient-based versus random search algorithms (a case study using ORCHIDEE v1.9.5.2)

Land surface models (LSMs), which form the land component of earth system models, rely on numerous processes for describing carbon, water and energy budgets, often associated with highly uncertain parameters. Data assimilation (DA) is a useful approach for optimising the most critical parameters in order to improve model accuracy and refine future climate predictions. In this study, we compare two different DA methods for optimising the parameters of seven plant functional types (PFTs) of the ORCHIDEE LSM using daily averaged eddy-covariance observations of net ecosystem exchange and latent heat flux at 78 sites across the globe. We perform a technical investigation of two classes of minimisation methods – local gradient-based (the L-BFGS-B algorithm, limited memory Broyden–Fletcher–Goldfarb–Shanno algorithm with bound constraints) and global random search (the genetic algorithm) – by evaluating their relative performance in terms of the model–data fit and the difference in retrieved parameter values. We examine the performance of each method for two cases: when optimising parameters at each site independently (“single-site” approach) and when simultaneously optimising the model at all sites for a given PFT using a common set of parameters (“multi-site” approach). We find that for the single site case the random search algorithm results in lower values of the cost function (i.e. lower model–data root mean square differences) than the gradient-based method; the difference between the two methods is smaller for the multi-site optimisation due to a smoothing of the cost function shape with a greater number of observations. The spread of the cost function, when performing the same tests with 16 random first-guess parameters, is much larger with the gradient-based method, due to the higher likelihood of being trapped in local minima. When using pseudo-observation tests, the genetic algorithm results in a closer approximation of the true posterior parameter value in the L-BFGS-B algorithm. We demonstrate the advantages and challenges of different DA techniques and provide some advice on using it for the LSM parameter optimisation.

58 GEOSCIENCES↗

Machine learning-based surrogate modeling for data-driven optimization: a comparison of subset selection for regression techniques

Optimization of simulation-based or data-driven systems is a challenging task, which has attracted significant attention in the recent literature. A very efficient approach for optimizing systems without analytical expressions is through fitting surrogate models. Due to their increased flexibility, nonlinear interpolating functions, such as radial basis functions and Kriging, have been predominantly used as surrogates for data-driven optimization; however, these methods lead to complex nonconvex formulations. Alternatively, commonly used regression-based surrogates lead to simpler formulations, but they are less flexible and inaccurate if the form is not known a priori. In this work, we investigate the efficiency of subset selection regression techniques for developing surrogate functions that balance both accuracy and complexity. Subset selection creates sparse regression models by selecting only a subset of original features, which are linearly combined to generate a diverse set of surrogate models. Five different subset selection techniques are compared with commonly used nonlinear interpolating surrogate functions with respect to optimization solution accuracy, computation time, sampling requirements, and model sparsity. Furthermore, our results indicate that subset selection-based regression functions exhibit promising performance when the dimensionality is low, while interpolation performs better for higher dimensional problems.

42 ENGINEERING↗