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At least 1,261 records · Page 70

Deep Bayesian local crystallography

Abstract The advent of high-resolution electron and scanning probe microscopy imaging has opened the floodgates for acquiring atomically resolved images of bulk materials, 2D materials, and surfaces. This plethora of data contains an immense volume of information on materials structures, structural distortions, and physical functionalities. Harnessing this knowledge regarding local physical phenomena necessitates the development of the mathematical frameworks for extraction of relevant information. However, the analysis of atomically resolved images is often based on the adaptation of concepts from macroscopic physics, notably translational and point group symmetries and symmetry lowering phenomena. Here, we explore the bottom-up definition of structural units and symmetry in atomically resolved data using a Bayesian framework. We demonstrate the need for a Bayesian definition of symmetry using a simple toy model and demonstrate how this definition can be extended to the experimental data using deep learning networks in a Bayesian setting, namely rotationally invariant variational autoencoders.

36 MATERIALS SCIENCE↗

Anomaly detection for MPC forecast in Fleet of Water Heaters

Among residential devices, water heaters consume 20% of home energy use in the United States. Water heaters possess the capability to store energy within their reservoirs, enabling the ability to decouple energy use from hot water use. This capability can be used to reduce energy usage and costs while also supporting grid services. This requires accurate forecasting of the parameters of the water heater such as upper and lower temperatures. In this study, we analyzed the performance and behavior of a water heater model used in the real-world to predict a control mechanism that is implemented in a smart residential neighborhood. The model forecasts are accurate in most cases but not all. In such scenarios, error correction of the model is necessary to further improve model predictive control accuracy. Anomaly detection is the first step of error correction. This study complements existing research by grouping time series data into two clusters one with anomalies and another without anomalies. To achieve this task, we explored and compared multiple unsupervised machine learning algorithms to perform clustering. Among these algorithms, Ward clustering has the lowest running time and identified the highest number of anomalies for the upper temperature limit. The proposed approach is tested based on the data collected in a neighborhood with 46 townhomes located in Atlanta, GA.

Lebakula, Viswadeep↗

Interpreting the Lipidome: Bioinformatic Approaches to Embrace the Complexity

Background Improvements in mass spectrometry (MS) technologies coupled with bioinformatics developments have allowed considerable advancement in the measurement and interpretation of lipidomics data in recent years. Since research areas employing lipidomics are rapidly increasing, there is a great need for bioinformatic tools that capture and utilize the complexity of the data. Currently, the diversity and complexity within the lipidome is often concealed by summing over or averaging individual lipids up to (sub)class-based descriptors, losing valuable information about biological function and interactions with other distinct lipids molecules, proteins and/or metabolites. Aim of review To address this gap in knowledge, novel bioinformatics methods are needed to improve identification, quantification, integration and interpretation of lipidomics data. The purpose of this mini-review is to summarize exemplary methods to explore the complexity of the lipidome. Key scientific concepts of review Here we describe six approaches that capture three core focus areas for lipidomics: (1) lipidome annotation including a resolvable database identifier, (2) interpretation via pathway- and enrichment-based methods, and (3) understanding complex interactions to emphasize specific steps in the analytical process and highlight challenges in analyses associated with the complexity of lipidome data.

Kyle, Jennifer E.↗

Efficient kinetic thermal inverse modeling for organic material decomposition

The prevalent use of organic materials in manufacturing is a fire safety concern, and motivates the need for predictive thermal decomposition models. A critical component of predictive modeling is numerical inference of kinetic parameters from bench scale data. Currently, an active area of computational pyrolysis research focuses on identifying efficient, robust methods for optimization. This paper demonstrates that kinetic parameter calibration problems can successfully be solved using classical gradient-based optimization. We explore calibration examples that exhibit characteristics of concern: high nonlinearity, high dimensionality, complicated schemes, overlapping reactions, noisy data, and poor initial guesses. The examples demonstrate that a simple, non-invasive change to the problem formulation can simultaneously avoid local minima, avoid computation of derivative matrices, achieve a computational efficiency speedup of 10x, and make optimization robust to perturbations of parameter components. Techniques from the mathematical optimization and inverse problem communities are employed. By re-examining gradient-based algorithms, we highlight opportunities to develop kinetic parameter calibration methods that should outperform current methods.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern

A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together with the radiation wavelength. The program compares the user data to a database of existing powder patterns associated with published papers and produces a rank ordered according to their similarity score. The program returns the digital object identifier and full reference of top-ranked papers together with a stack plot of the user data alongside the top-five database entries. The paper describes the approach and explores successes and challenges.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Application of machine learning for optical emission spectroscopy data in NAGDIS-II

In this study, we applied machine learning to optical emission spectroscopy (OES) data and device parameters from the linear plasma device NAGDIS-II to explore the potential application of machine learning for predicting electron density, $n$ e , and temperature, $T$ e . The covered ranges of $n$ e and $T$ e , which were measured by an electrostatic probe, are 3.6 × 10 17 –2.4 × 10 19 m -3 and 0.3–7.1 eV, respectively. A three hidden layer neural network (NN) is introduced to model the relationship between $n$ e /$T$ e and the combination of line intensities, radial position, and device parameters. It is shown that the errors in $n$ e and $T$ e become 18.0 and 18.8%, respectively, which were almost the same level for the electrostatic probe, using all available data. Lasso regression and greedy algorithm are used to select the necessary line emissions. In conclusion, it is shown that four- or five-line intensities are sufficient to obtain almost the same quality as the one with all the other lines.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Diverse signatures of convergent evolution in cactus-associated yeasts

Many distantly related organisms have convergently evolved traits and lifestyles that enable them to live in similar ecological environments. However, the extent of phenotypic convergence evolving through the same or distinct genetic trajectories remains an open question. Here, we leverage a comprehensive dataset of genomic and phenotypic data from 1,049 yeast species in the subphylum Saccharomycotina (Kingdom Fungi, Phylum Ascomycota) to explore signatures of convergent evolution in cactophilic yeasts, ecological specialists associated with cacti. We inferred that the ecological association of yeasts with cacti arose independently approximately 17 times. Using a machine learning–based approach, we further found that cactophily can be predicted with 76% accuracy from both functional genomic and phenotypic data. The most informative feature for predicting cactophily was thermotolerance, which we found to be likely associated with altered evolutionary rates of genes impacting the cell envelope in several cactophilic lineages. We also identified horizontal gene transfer and duplication events of plant cell wall–degrading enzymes in distantly related cactophilic clades, suggesting that putatively adaptive traits evolved independently through disparate molecular mechanisms. Notably, we found that multiple cactophilic species and their close relatives have been reported as emerging human opportunistic pathogens, suggesting that the cactophilic lifestyle—and perhaps more generally lifestyles favoring thermotolerance—might preadapt yeasts to cause human disease. This work underscores the potential of a multifaceted approach involving high-throughput genomic and phenotypic data to shed light onto ecological adaptation and highlights how convergent evolution to wild environments could facilitate the transition to human pathogenicity.

59 BASIC BIOLOGICAL SCIENCES↗

Hydride-based thermal energy storage

Abstract The potential and research surrounding metal hydride (MH) based thermal energy storage is discussed, focusing on next generation thermo-chemical energy storage (TCES) for concentrated solar power. The site availability model to represent the reaction mechanisms of both the forward and backward MH reaction is presented, where this model is extrapolated to a small pilot scale reactor, detailing how a TCES could function/operate in a real-world setting using a conventional shell & tube reactor approach. Further, the important parameter of effective thermal conductivity is explored using an innovative multi-scale model, to providing extensive and relevant experimental data useful for reactor and system design. Promising high temperature MH material configurations may be tuned by either destabilisation, such as using additions to Ca and Sr based hydrides, or by stabilisation, such as fluorine addition to NaH, MgH 2 , or NaMgH 3 . This versatile thermodynamic tuning is discussed, including the challenges in accurately measuring the material characteristics at elevated temperatures (500 –700 °C). Attention to scale up is explored, including generic design and prototype considerations, and an example of a novel pilot-scale pillow-plate reactor currently in development; where materials used are discussed, overall tank design scope and system integration.

25 ENERGY STORAGE↗

The Historical Development of Large‐Scale Paleoclimate Field Reconstructions Over the Common Era

Abstract Climate field reconstructions (CFRs) combine modern observational data with paleoclimatic proxies to estimate climate variables over spatiotemporal grids during time periods when widespread observations of climatic conditions do not exist. The Common Era (CE) has been a period over which many seasonally‐ and annually‐resolved CFRs have been produced on regional to global scales. CFRs over the CE were first produced in the 1970s using dendroclimatic records and linear regression‐based approaches. Since that time, many new CFRs have been produced using a wide range of proxy data sets and reconstruction techniques. We assess the early history of research on CFRs for the CE, which provides context for our review of advances in CFR research over the last two decades. We review efforts to derive gridded hydroclimatic CFRs over continental regions using networks of tree‐ring proxies. We subsequently explore work to produce hemispheric‐ and global‐scale CFRs of surface temperature using multi‐proxy data sets, before specifically reviewing recently‐developed data assimilation techniques and how they have been used to produce simultaneous reconstructions of multiple climatic fields globally. We then review efforts to develop standardized and digitized databases of proxy networks for use in CFR research, before concluding with some thoughts on important next steps for CFR development.

Smerdon, Jason E.↗

Connecting Femtosecond Transient Absorption Microscopy with Spatially Coregistered Time Averaged Optical Imaging Modalities

Multimodal all-optical imaging involving coregistered femtosecond transient absorption microscopy (TAM), time-integrated photoluminescence (PL), and steady-state modalities such as confocal reflectance and transmission offers an appealing approach to gain a comprehensive understanding of complex electronic excited-state phenomena in spatially heterogeneous systems. A unique combination of these modalities allows us to unravel not only the competing electronic excited-state dynamical processes but also the underlying morphological information with simultaneous high temporal and spatial resolution. However, correlating the various images obtained from time-resolved and time-independent modalities is generally nontrivial and particularly challenging when the electronic dynamics under study evolve in both time and space. Here, we demonstrate a new approach for rationally correlating time-resolved microscopy with coregistered time-integrated or steady-state modalities. Specifically, our approach involves an extended global lifetime analysis of the time-resolved microscopic data set to separate distinct dynamical processes taking place on commensurate time scales, and the resulting decay-associated amplitude maps (DAAMs) were applied to explore correlations with the images acquired using time-independent modalities. The feasibility of our approach was validated through analyzing a multimodal data set acquired from a thin film of chloride-containing mixed lead halide perovskites (CH 3 NH 3 PbI 3–x Cl x ) using femtosecond transient absorption, time-integrated PL, and confocal reflectance microscopies. Analysis of the results obtained enable us to gain new insight into the complex ultrafast relaxation dynamics in this highly heterogeneous system.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Model Driven Deception for Defense of Operational Technology Environments

Due to the strong integration of real-world physics, OT deception platforms must operate differently than traditional IT deceptions. For instance, turning off a valve will be detected downstream by other sensors because the flow will reduce and stop. Additionally, controllers and applications leverage data from sensors to send control commands to each other. A believable deception must be integrated with the system to project the effects of events. An attack will likely attempt to control the physical process in a negative manner. To make the attacker believe they are achieving their objective, it must predict the effects of these actions, to a reasonable degree. Our approach to simulating a model to generate realistic decoy behavior is explored including description of two approaches: a physics model-based approach and a data driven approach. The performance of two machine learning techniques are investigated in their ability to learn a good enough model of the physics of the system.

97 MATHEMATICS AND COMPUTING↗

Scaling SQL to the Supercomputer for Interactive Analysis of Simulation Data

AI and simulation workloads consume and generate large amounts of data that need to be searched, transformed and merged with other data. With the goal of treating data as a first-class citizen inside a traditionally compute-centric HPC environment, we explore how the use of accelerators and high-speed interconnects can speed up tasks which otherwise constitute bottlenecks in computational discovery workflows. BlazingSQL is SQL engine that runs natively on NVIDIA GPUs and supports internode communication for fast analytics on terabyte-scale tabular data sets. We show how a fast interconnect improves query performance if leveraged through the Unified Communication X (UCX) middleware. We envision that future computing platforms will integrate accelerated database query capabilities for immediate and interactive analysis of large simulation data.

Glaser, Jens↗

A Market Feedback Framework for Improved Estimates of the Arbitrage Value of Energy Storage Using Price-Taker Models

Price-taker (PT) models are often used to assess the potential value or revenue of energy arbitrage opportunities for energy storage in wholesale markets. But as greater amounts of energy storage are deployed on the grid, current PT models fail to predict the effects that energy storage itself can have on market prices. This can lead to an overestimation of the economic value of storage and an inability to capture price suppression. In this paper, we propose the use of a modified PT model to simulate the impact of increased storage deployment on energy prices and the resulting impact on revenue. Our method uses a gradient-boosting regressor to estimate the impact on prices, and we apply our method on historical price data from the PJM and California Independent System Operator wholesale markets. We use this approach to explore possible causes of electricity price suppression that occur from storage capacity additions, which is generally not possible with PT models.

arbitrage↗

Weak-charge form-factor determination at the electron-ion collider

Determining the weak charge form factor, 𝐹 𝑊 ⁡(𝑄 2 ), of nuclei over a continuous range of momentum transfers, 0 ≲ 𝑄 2 ≲ 0.1 GeV 2 , is essential for mapping out the distribution of neutrons in nuclei. The neutron density distribution has significant implications for a broad range of areas, including studies of nuclear structure, neutron stars, and physics beyond the Standard Model. Currently, our knowledge of 𝐹 𝑊 ⁡(𝑄 2 ) comes primarily from fixed target experiments that measure the parity-violating asymmetry in coherent elastic electron-ion scattering. Fixed target experiments, such as CREX and PREX-1,2, have provided high-precision weak charge form factor extractions for the 48 Ca and 208 Pb nuclei, respectively. However, a major limitation of fixed target experiments is that they each provide data only at a single value of 𝑄 2 . With the proposed electron-ion collider (EIC) on the horizon, we explore its potential to impact the determination of the weak charge form factor. While it cannot compete with the precision of fixed target experiments, it can provide data over a wide and continuous range of 𝑄 2 values, and for a wide variety of nuclei. We show that with data corresponding to an integrated luminosity of ℒ ∼ 500/𝐴 fb −1 , where 𝐴 is the nucleus atomic weight, the EIC can significantly impact constraints by lifting degeneracies in theoretical models of the neutron density distribution. Ensuring EIC detector coverage at low 𝑄 2 and large negative pseudorapidities will be essential for such 𝐹 𝑊 ⁡(𝑄 2 ) measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Cognitive simulation models for inertial confinement fusion: Combining simulation and experimental data

The design space for inertial confinement fusion (ICF) experiments is vast, and experiments are extremely expensive. Researchers rely heavily on computer simulations to explore the design space in search of high-performing implosions. However, ICF multiphysics codes must make simplifying assumptions, and thus deviate from experimental measurements for complex implosions. For more effective design and investigation, simulations require input from past experimental data to better predict future performance. In this work, we describe a cognitive simulation method for combining simulation and experimental data into a common, predictive model. This method leverages a machine learning technique called “transfer learning,” the process of taking a model trained to solve one task, and partially retraining it on a sparse dataset to solve a different, but related task. In the context of ICF design, neural network models are trained on large simulation databases and partially retrained on experimental data, producing models that are far more accurate than simulations alone. Here, we demonstrate improved model performance for a range of ICF experiments at the National Ignition Facility and predict the outcome of recent experiments with less than 10% error for several key observables. We discuss how the methods might be used to carry out a data-driven experimental campaign to optimize performance, illustrating the key product—models that become increasingly accurate as data are acquired.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Extreme-scale stochastic optimization and simulation via learning-enhanced decomposition and parallelization (Final Technical Report)

Stochastic optimization and simulation models ubiquitously arise in designing and operating complex service/engineering systems. They can be extreme in scale due to high-dimensional data and decisions, and can also involve decisions made sequentially in response to newly revealed data, both causing significant computational challenge. The objective of this research is to explore a unified framework that integrates machine learning with discrete optimization and risk-averse modeling, to improve the efficiency of decomposition paradigms for stochastic optimization and simulations at extreme scale. The models we consider represent a broad class of complex decision-making problems, where 0-1 or continuous decisions are made before and/or after knowing multiple sources of uncertainties that could be correlated. We will employ machine learning methods to dynamically decide and prioritize computational procedures, including cut generation, branching, and bounding of the optimal objective. Furthermore, the research will shed new lights on the traditional decomposition algorithms for extreme-scale computing. Deliverables of the research include new modeling and computational methods for advancing the state-of-the-art research in optimization and simulation, bringing many relevant risk-averse, data-driven optimization problems in practice within the range of tractability. Examples include distributed computing server scheduling and sensor deployment for monitoring critical infrastructures. Success in this effort will enable progress in solving multiple extreme-scale problems in the complex system design and operations arising from DoE missions in energy, environment, and national security.

24 POWER TRANSMISSION AND DISTRIBUTION↗

GOOML - Finding Optimization Opportunities for Geothermal Operations: Preprint

Geothermal Operational Optimization with Machine Learning (GOOML) is a transferable and extensible component-based geothermal asset modeling framework that considers complex steamfield relationships and identifies optimization prospects using a data-driven approach. We have used this framework to develop digital twins that provide steamfield operators with an operational environment to analyze and understand historical and forecasted power production, explore new steamfield configuration possibilities, and seek optimal asset management for real world applications. The GOOML modeling software is built on a generic component-based systems framework that allows for both historical and forecast analysis. A GOOML model can perform historical data-assimilation using first-principal thermodynamics to create a meaningful data model. Historical production data can then be coupled with a forecast framework to train machine-learning models of steamfield components to predict future outputs. This modeling environment enables digital exploration of steamfield design configurations and operational scenarios. GOOML digital twins have been developed for steamfields in New Zealand and the United States representing differing power generation and field conditions. These digital twins have been validated by comparing hindcast predictions against historical production data. Reinforcement learning experiments were conducted to demonstrate the ability to programmatically explore the operations space using machine learning agents. Our initial results are compelling; two to five percent increases in annual energy production were demonstrated by the GOOML models with no additional infrastructure build required. GOOML offers a new approach to geothermal operations by applying state-of-the-art machine learning algorithms, comprehensive data analytics, and interaction with digital twins. Through application of these tools, operators will realize greater availability and higher net generation which will increase the cost effectiveness of geothermal energy projects.

access↗

Exploring the link between C iv outflow kinematics and sublimation-temperature dust in quasars

ABSTRACT Using data from SDSS, UKIDSS, and WISE, we investigate the properties of the high-frequency cutoff to the infrared emission in ≃5000 carefully selected luminous (Lbol ∼ 1047) type 1 quasars. The strength of ≃2 μm emission, corresponding to emission from the hottest ($T\gt 1200\rm \, K$) dust in the sublimation zone surrounding the central continuum source, is observed to correlate with the blueshift of the C iv λ1550 emission line. We therefore find that objects with stronger signatures of nuclear outflows tend to have a larger covering fraction of sublimation-temperature dust. When controlling for the observed outflow strength, the hot dust covering fraction does not vary significantly across our sample as a function of luminosity, black hole mass, or Eddington fraction. The correlation between the hot dust and the C iv line blueshifts, together with the lack of correlation between the hot dust and other parameters, therefore provides evidence of a link between the properties of the broad emission line region and the infrared-emitting dusty regions in quasars.

Temple, Matthew J.↗