Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Cluster Analysis”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,261 records · Page 70

The emergence and transmission dynamics of HIV-1 CRF07_BC in Mainland China

A total of 1155 partial pol gene sequences of human immunodeficiency virus (HIV)-1 CRF07_BC were sampled between 1997 and 2015, spanning 13 provinces in Mainland China and risk groups [heterosexual, injecting drug users (IDU), and men who have sex with men (MSM)] to investigate the evolution, adaptation, spatiotemporal and risk group dynamics, migration patterns, and protein structure of HIV-1 CRF07_BC. Due to the unequal distribution of sequences across time, location, and risk group in the complete dataset (‘full1155’), subsampling methods were used. Maximum-likelihood and Bayesian phylogenetic analysis as well as discrete trait analysis of geographical location and risk group were carried out. To study mutations of a cluster of HIV-1 CRF07_BC (CRF07-1), we performed a comparative analysis of this cluster to the other CRF07_BC sequences (‘backbone_295’) and mapped the mutations observed in the respective protein structure. Our findings showed that HIV-1 CRF07_BC most likely originated among IDU in Yunnan Province between October 1992 to July 1993 [95 per cent hightest posterior density (HPD): May 1989–August 1995] and that IDU in Yunnan Province and MSM in Guangdong Province likely served as the viral sources during the early and more recent spread in Mainland China. We also revealed that HIV-1 CRF07-1 has been spreading for roughly 20 years and continues to cause local transmission in Mainland China and worldwide. Overall, our study sheds light on the dynamics of HIV-1 CRF07_BC distribution patterns in Mainland China. Our research may also be useful in formulating public health policies aimed at controlling acquired immune deficiency syndrome in Mainland China and globally.

60 APPLIED LIFE SCIENCES↗

Energy Efficient Engine Low Pressure Subsystem Aerodynamic Analysis

The objective of this study was to demonstrate the capability to analyze the aerodynamic performance of the complete low pressure subsystem (LPS) of the Energy Efficient Engine (EEE). Detailed analyses were performed using three- dimensional Navier-Stokes numerical models employing advanced clustered processor computing platforms. The analysis evaluates the impact of steady aerodynamic interaction effects between the components of the LPS at design and off- design operating conditions. Mechanical coupling is provided by adjusting the rotational speed of common shaft-mounted components until a power balance is achieved. The Navier-Stokes modeling of the complete low pressure subsystem provides critical knowledge of component acro/mechanical interactions that previously were unknown to the designer until after hardware testing.

Hall, Edward J.↗

Clustering of the Diffuse Infrared Light from the COBE DIRBE Maps: Power Spectrum Analysis and Excess Isotropic Component of Fluctuations - 3

The cosmic infrared background (CIB) radiation is the cosmic repository for energy release throughout the history of the universe. The spatial fluctuations of the CIB resulting from galaxy clustering are expected to be at least a few percent on scales of a degree, depending on the luminosity and clustering history of the early universe. Using the all-sky data from the COBE DIRBE instrument at wavelengths 1.25 - 100 microns we attempt to measure the CIB fluctuations. In the near-IR, foreground emission is dominated by small scale structure due to stars in the Galaxy. There we find a strong correlation between the amplitude of the fluctuations and Galactic latitude after removing bright foreground stars. Using data outside the Galactic plane (absolute value of b > 20 deg) and away from the center (90 deg < l < 270 deg) we extrapolate the amplitude of the fluctuations to cosec absolute value of b = 0. We find a positive intercept of delta.F(sub rms) = 15.5(sup +3.7, sub -7.0), 5.9(sup +1.6, sub -3.7), 2.4(sup +0.5, sub -0.9), 2.0(sup +0.25, sub -0.5) nW/sq m.sr at 1.25, 2.2, 3.5 and 4.9 microns respectively, where the errors are the range of 92% confidence limits. For color subtracted maps between band 1 and 2 we find the isotropic part of the fluctuations at 7.6(sup +1.2, sub -2.4) nW/sq m.sr. Based on detailed numerical and analytic models, this residual is not likely to originate from the Galaxy, our clipping algorithm, or instrumental noise. We demonstrate that the residuals from the fit used in the extrapolation are distributed isotropically and suggest that this extra variance may result from structure in the CIB. We also obtain a positive intercept from a linear combination of maps at 1.25 and 2.2 microns. For 2 deg < theta < 15 deg, a power-spectrum analysis yields limits of (theta/5 deg) x delta.F(sub rms)(theta) < 6, 2.5, 0.8, 0.5 nW/sq m.sr at 1.25, 2.2, 3.5 and 4.9 microns respectively. From 10 - 100 microns, the dominant foregrounds are emission by dust in the Solar system and the Galaxy. There the upper limits on the CIB fluctuations are below 1 nW/sq m.sr and are lowest (< equal 0.5 nW/sq m.sr) at 25 microns.

Kashlinsky, A.↗

Energy Efficient Engine Low Pressure Subsystem Flow Analysis

The objective of this project is to provide the capability to analyze the aerodynamic performance of the complete low pressure subsystem (LPS) of the Energy Efficient Engine (EEE). The analyses were performed using three-dimensional Navier-Stokes numerical models employing advanced clustered processor computing platforms. The analysis evaluates the impact of steady aerodynamic interaction effects between the components of the LPS at design and off-design operating conditions. Mechanical coupling is provided by adjusting the rotational speed of common shaft-mounted components until a power balance is achieved. The Navier-Stokes modeling of the complete low pressure subsystem provides critical knowledge of component aero/mechanical interactions that previously were unknown to the designer until after hardware testing.

Hall, Edward J.↗

Multicolor photometry of x ray selected Abell clusters

Strong evidence of evolution in cluster of galaxies at relatively low redshift has been indicated by recent x-ray studies. We are conducting a comprehensive optical study of a sample of Abell clusters that are strong x-ray emitters in order to test the x-ray evolution scenarios that have been proposed. The initial observations consist of three-color (B, R, I) imaging of low-redshift (0.025 less than z less than 0.25) Abell clusters using the T2KA CCD on the 0.9m telescope at KPNO the large field (23 ft. x 23 ft., approx. 1 Mpc at z = 0.025 and approx. 7 Mpc at z = 0.25) gives the unprecedented ability to sample most of the extent of the field of low-redshift clusters using a CCD. Given the advantages of CCDs over photographic plates, we expect to improve on many of the previous studies. A list of x-ray selected cluster of galaxies provides a homogeneous sample of true clusters that cannot be mistaken from apparent over-densities due to projection effects of field galaxies. Some optical indicators of cluster evolution are the population of ratios of cluster galaxies and their spatial distribution, a regular spiral-poor cluster is expected to be more evolved than an irregular spiral-rich cluster. Also regular spiral-poor clusters present high central concentrations while irregular spiral-rich are less concentrated. Variations in the Luminosity Function (LF) can indicate evolution. But in order to build reliable LFs it is necessary to determine the Hubble types of the cluster galaxies. In the past the classifications of cluster galaxies have been done by visual inspection on photographic material, this technique is very limited and can lead to errors when the galaxies are faint. The Hubble types of cluster galaxies can be determined in an objective manner by comparing colors and profiles from surface photometry. To show that this approach is feasible, I have presented preliminary results from the photometric analysis of the Abell-cluster A1213. Colors and profiles of the surface brightness distribution were compared to determine the Hubble types of the cluster galaxies.

Lopez-Cruz, Omar↗

Formation of Clustered DNA Damage after High-LET Irradiation: A Review

Radiation can cause as well as cure cancer. The risk of developing radiation-induced cancer has traditionally been estimated from cancer incidence among survivors of the atomic bombs in Hiroshima and Nagasaki. These data provide the best estimate of human cancer risk over the dose range for low linear energy transfer (LET) radiations, such as X- or gamma-rays. The situation of estimating the real biological effects becomes even more difficult in the case of high LET particles encountered in space or as the result of domestic exposure to particles from radon gas emitters or other radioactive emitters like uranium-238. Complex DNA damage, i.e., the signature of high-LET radiations comprises by closely spaced DNA lesions forming a cluster of DNA damage. The two basic groups of complex DNA damage are double strand breaks (DSBs) and non-DSB oxidative clustered DNA lesions (OCDL). Theoretical analysis and experimental evidence suggest there is increased complexity and severity of complex DNA damage with increasing LET (linear energy transfer) and a high mutagenic or carcinogenic potential. Data available on the formation of clustered DNA damage (DSBs and OCDL) by high-LET radiations are often controversial suggesting a variable response to dose and type of radiation. The chemical nature and cellular repair mechanisms of complex DNA damage have been much less characterized than those of isolated DNA lesions like an oxidized base or a single strand break especially in the case of high-LET radiation. This review will focus on the induction of clustered DNA damage by high-LET radiations presenting the earlier and recent relative data.

Hada, Megumi↗

BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters

Microbial metabolic gene clusters encode the biosynthesis or catabolism of metabolites that facilitate ecological specialization, mediate microbiome interactions and constitute a major source of medicines and crop protection agents. Here, we present BiG-SCAPE and BiG-SLiCE 2.0, next-generation methods that facilitate scalable, accurate and interactive gene cluster analyses. BiG-SCAPE 2.0 updates its classification, alignment methods, and visualizations, enabling more accurate analysis, up to 8x faster runtimes and halved memory requirements. BiG-SLiCE 2.0 updates its distance metric, pHMM database, and classification logic, resulting in increased sensitivity nearing that of BiG-SCAPE. Analysis of 260,630 biosynthetic gene clusters from publicly available genomes reveals that both tools generate concurring estimates of gene cluster diversity, thus providing significantly extended methodological support for recent evidence indicating that the vast majority of natural product diversity remains unexplored. Together, these updates will facilitate global genome mining efforts for natural product discovery and microbiome analyses scalable with current data sizes.

Draisma, Arjan [Wageningen University & Research (↗

Solar Wind/Magnetosphere/Ionosphere Coupling and the Temporal and Spatial Evolution of Boundary Layers using Cluster, Polar and other ISTP Satellites

Our analysis concerns macro and meso-scale aspects of coupling between the IMF and the magnetosphere-ionosphere system, as opposed to the microphysics of determining how electron gyrotropy is broken and merging actually occurs. We correlate observed behaviors at Cluster and at Polar with temporal variations in other regions, such as in the ionosphere as measured by SuperDARN. Addressing problems with simultaneous observations from diverse locations properly constrains our interpretations.

Maynard, Nelson C.↗

A Generative Model for Realistic Galaxy Cluster X-Ray Morphologies

Abstract The X-ray morphologies of clusters of galaxies display significant variations, reflecting their dynamical histories and the nonlinear dependence of X-ray emissivity on the density of the intracluster gas. Qualitative and quantitative assessments of X-ray morphology have long been considered a proxy for determining whether clusters are dynamically active or “relaxed.” Conversely, the use of circularly or elliptically symmetric models for cluster emission can be complicated by the variety of complex features realized in nature, spanning scales from megaparsecs down to the resolution limit of current X-ray observatories. In this work, we use mock X-ray images from simulated clusters from The Three Hundred project to define a basis set of cluster image features. We take advantage of the clusters’ approximate self-similarity to minimize the differences between images before encoding the remaining diversity through a distribution of high-order polynomial coefficients. Principal component analysis then provides an orthogonal basis for this distribution, corresponding to natural perturbations from an average model. This representation allows novel, realistically complex X-ray cluster images to be easily generated, and we provide code to do so. The approach provides a simple way to generate training data for cluster image analysis algorithms and could be straightforwardly adapted to generate clusters displaying specific types of features or selected by physical characteristics available in the original simulations.

79 ASTRONOMY AND ASTROPHYSICS↗

Search for gamma-ray lines towards galaxy clusters with the Fermi-LAT

We report on a search for monochromatic γ-ray features in the spectra of galaxy clusters observed by the Fermi Large Area Telescope. Galaxy clusters are the largest structures in the Universe that are bound by dark matter (DM), making them an important testing ground for possible selfinteractions or decays of the DM particles. Monochromatic γ-ray lines provide a unique signature due to the absence of astrophysical backgrounds and are as such considered a smoking-gun signature for new physics. An unbinned joint likelihood analysis of the sixteen most promising clusters using five years of data at energies between 10 and 400 GeV revealed no significant features. For the case of self-annihilation, we set upper limits on the monochromatic velocity-averaged interaction cross section. These limits are compatible with those obtained from observations of the Galactic Center, albeit weaker due to the larger distance to the studied clusters.

79 ASTRONOMY AND ASTROPHYSICS↗

The panchromatic Hubble Andromeda Treasury. V. Ages and masses of the year 1 stellar clusters

We present ages and masses for 601 star clusters in M31 from the analysis of the six filter integrated light measurements from near-ultraviolet to near-infrared wavelengths, made as part of the Panchromatic Hubble Andromeda Treasury (PHAT). We derive the ages and masses using a probabilistic technique, which accounts for the effects of stochastic sampling of the stellar initial mass function. Tests on synthetic data show that this method, in conjunction with the exquisite sensitivity of the PHAT observations and their broad wavelength baseline, provides robust age and mass recovery for clusters ranging from ∼10{sup 2} to 2 × 10{sup 6} M {sub ☉}. We find that the cluster age distribution is consistent with being uniform over the past 100 Myr, which suggests a weak effect of cluster disruption within M31. The age distribution of older (>100 Myr) clusters falls toward old ages, consistent with a power-law decline of index –1, likely from a combination of fading and disruption of the clusters. We find that the mass distribution of the whole sample can be well described by a single power law with a spectral index of –1.9 ± 0.1 over the range of 10{sup 3}-3 × 10{sup 5} M {sub ☉}. However, if we subdivide the sample by galactocentric radius, we find that the age distributions remain unchanged. However, the mass spectral index varies significantly, showing best-fit values between –2.2 and –1.8, with the shallower slope in the highest star formation intensity regions. We explore the robustness of our study to potential systematics and conclude that the cluster mass function may vary with respect to environment.

79 ASTRONOMY AND ASTROPHYSICS↗

Pt 8 cluster on alumina under a pressure of hydrogen: Support-dependent reconstruction from first-principles global optimization

Alumina supported Pt nano clusters under hydrogen environment play a crucial role for many heterogeneous catalysis applications. As such, we conducted grand canonical genetic algorithm (GCGA) simulations for supported Pt 8 clusters in hydrogen gas environment to study the intra-cluster, cluster-support, and cluster-adsorbate interactions. Two alumina surfaces, α-Al 2 O 3 (0001) and $γ$-Al 2 O 3 (100), and two conditions T=600°C, p H2 = 0.1bar and T=25°C, p H2 = 1.0 bar were considered corresponding to low and high hydrogen chemical potential $μ$ H , respectively. The low free energy ensemble of Pt 8 is decorated by a medium (2–12 H), resp. high (20–30 H), number of hydrogen atoms under equilibrium at low $μ$ H , respectively, high $μ$ H , and undergoes different morphology transformations on the two surfaces. On α-Al2O3(0001), Pt8 is mostly 3D but very fluxional in structure at low μH and converts to open one-layer 2D structures with minimal fluxionality at high μH, whereas on $γ$-Al 2 O 3 (100), the exact opposite occurs, and Pt 8 clusters present one-layer 2D shapes at low $μ$ H and switch into compact 3D shapes under high $μ$ H , during which the Pt 8 cluster preserves moderate fluxionality. Further analysis reveals similar Pt–Pt bond length increase when switching from low $μ$ H to high $μ$ H on both surfaces, though morphology transformations are different. Electronic structure analysis shows the existence of bonding interactions between Pt and Lewis acidic Al 3+ sites along with the Pt – O interaction, which implies the necessity to include Al neighbors to discuss the electronic structure of small Pt clusters.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Typology of Cities for Systems and Modeling for Accelerated Research in Transportation (SMART) Mobility Consortium

Mobility patterns, technology adoption and associated energy outcomes vary tremendously across settlement types. This poster discusses how a highly geographically resolved exploration of the social, economic, techno-infrastructural and environmental domains is key to understanding observed variations in transportation technology adoption and associated mobility and energy outcomes. Current socioeconomic and mobility data sets at the census block group level are integrated in a hierarchical clustering approach to show how variations in mobility and energy outcomes are shaped by these domains - which may enhance progress on investments, or effectively inform planning and other decisions for state-wide goals. In a pilot analysis in New York, the clustering produces four settlement types to predict dependent variables of electric vehicle (EV) adoption rates, commute mode, vehicle fuel economy, and vehicles per household. This typology shows EV adoption rates among the core urban population, which is wealthy and highly-educated, are high - 3 EVs/1,000 vehicles versus 1 EV/1,000 vehicles among the urban working class. Commuting mode is closely linked with population and employment density - more than 90% of core urbanites use transit or active modes, compared with only 22% of suburbanites and 17% of rural residents. Household vehicle ownership also varies, with two vehicles per household in rural areas and only 0.5 in core urban settings.Important findings on differences among the rural, suburban, urban, and urban core settlement types suggest a need to explore how best to manage and anticipate very different types of services that may be supportive in achieving energy-efficient and affordable mobility systems state-wide.

30 DIRECT ENERGY CONVERSION↗

Techniques for Automated Performance Analysis

The performance of a particular HPC code depends on a multitude of variables, including compiler selection, optimization flags, OpenMP pool size, file system load, memory usage, MPI configuration, etc. As a result of this complexity, current predictive models have limited applicability, especially at scale. We present a formulation of scientific codes, nodes, and clusters that reduces complex performance analysis to well-known mathematical techniques. Building accurate predictive models and enhancing our understanding of scientific codes at scale is an important step towards exascale computing.

97 MATHEMATICS AND COMPUTING↗

Thermally activated nucleation and growth of cobalt and nickel oxide nanoparticles on porous silica

Integrating mesoscale to the molecular level understanding of nanoparticle nucleation phenomena can drive the bottom-up synthesis approach for target applications. In this work, we studied the thermal evolution of cobalt and nickel oxide nanoparticle structural phases on porous silica host from over wide spatial scale using multi-modal analysis involving scanning transmission electron microscope (STEM), X-ray absorption (XANES) and nuclear magnetic resonance (NMR) spectroscopies along with density functional theory (DFT) based calculations. The TEM analysis reveals thermally activated nanoparticle clustering and subsequent interaction with the porous host material. The Co and Ni K-edge XANES spectra revealed the evolution from metal hydroxide to metal oxide and subsequently metal silicate composites with calcinination temperature. 29 Si NMR analysis revealed the role of surface functional groups of silica host for silicate composite formation which is corroborated by DFT studies.

36 MATERIALS SCIENCE↗

Observations of faint field galaxies

Number counts, colors, and angular correlations of field galaxies fainter than 20th mag are summarized. Resulting conclusions regarding the presence and nature of luminosity, spectral, and clustering evolution remain contraversial. Preliminary analysis of two major spectroscopic surveys near completion suggests that by z approximately 0.5, larger numbers of very blue galaxies of moderate luminosities are found than today. The skewer-like surveys also provide new probes of galaxy clustering on scales previously unexplored (larger than 200 Mpc) and over lookback times of several billion years.

Koo, David C.↗