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At least 127 records · Page 7

Clinically applicable 53-Gene prognostic assay predicts chemotherapy benefit in gastric cancer: A multicenter study

BACKGROUND:We previously established a 53-gene prognostic signature for overall survival (OS) of gastric cancer patients. This retrospective multi-center study aimed to develop a clinically applicable gene expression detection assay and to investigate the prognostic value of this signature. METHODS:A TCGA gastric adenocarcinoma cohort (TCGA-STAD) was used for comparing 53-gene signature with other gene signatures. A high-throughput mRNA hybridization gene expression assay was developed to quantify the expression of 53-genes in formalin-fixed paraffin-embedded tissues of 540 patients enrolled from three hospitals. 180 patents were randomly selected from two hospitals to build a prognostic prediction model based on the 53-gene signature using leave-p-out (one-third out) cross-validation method together with Cox regression and Kaplan-Meier analysis, and the model was assessed on three validation cohorts. FINDINGS:In the evaluation phase, studies based on TCGA-STAD showed that the 53-gene signature was significantly superior to other three prognostic signatures and was independent of TCGA molecular subtypes and clinical factors. For clinical validation and utility, the prognostic scores were generated using the newly developed assay, which was reliable and sensitive, in 100 sampling training sets and were significantly associated with OS in 100 sampling validation sets. The scores were significantly associated with OS in three independent and combined validation cohorts, and in patients with stages II and III/IV. The multivariate Cox regression demonstrated that the prognostic power of the score was independent of clinical factors, consistent with those findings in the TCGA dataset. Finally, patients with good prognostic scores exhibited significantly a better 5-year OS rate from adjuvant FOLFOX chemotherapy after surgery than from other chemotherapies. INTERPRETATION:The 53-gene prognostic score system is clinically applicable for predicting the OS of patients independent of clinical factors in gastric cancers, which could also be a promising predictive biomarker for FOLFOX regimen. FUNDING:Chinese National Science and Technology, National Natural Science Foundation and Natural Science Foundation of Jiangsu Province.

60 APPLIED LIFE SCIENCES↗

Knowledge-based system verification and validation

The objective of this task is to develop and evaluate a methodology for verification and validation (V&V) of knowledge-based systems (KBS) for space station applications with high reliability requirements. The approach consists of three interrelated tasks. The first task is to evaluate the effectiveness of various validation methods for space station applications. The second task is to recommend requirements for KBS V&V for Space Station Freedom (SSF). The third task is to recommend modifications to the SSF to support the development of KBS using effectiveness software engineering and validation techniques. To accomplish the first task, three complementary techniques will be evaluated: (1) Sensitivity Analysis (Worchester Polytechnic Institute); (2) Formal Verification of Safety Properties (SRI International); and (3) Consistency and Completeness Checking (Lockheed AI Center). During FY89 and FY90, each contractor will independently demonstrate the user of his technique on the fault detection, isolation, and reconfiguration (FDIR) KBS or the manned maneuvering unit (MMU), a rule-based system implemented in LISP. During FY91, the application of each of the techniques to other knowledge representations and KBS architectures will be addressed. After evaluation of the results of the first task and examination of Space Station Freedom V&V requirements for conventional software, a comprehensive KBS V&V methodology will be developed and documented. Development of highly reliable KBS's cannot be accomplished without effective software engineering methods. Using the results of current in-house research to develop and assess software engineering methods for KBS's as well as assessment of techniques being developed elsewhere, an effective software engineering methodology for space station KBS's will be developed, and modification of the SSF to support these tools and methods will be addressed.

Johnson, Sally C.↗

Tailoring the Stiffness of Large Mirrors to Reduce Specific Optical Aberrations

Presented is a method that tailors the geometry of a mirror’s core structure as well as the mounting interface such that a desired set of aberrations is reduced. It will be shown that targeting specific aberrations as opposed to reducing overall surface figure error (SFE) is a valid method to reduce weight or improve performance. Analyzed first is the self-weight deflection of a thin circular plate of uniform thickness continuously supported along its outer edge. The Kirchhoff-Love plate bending equations are related to the radially symmetric Zernike polynomials of piston, defocus, and primary spherical aberration. Next, the mirror’s radial thickness is optimized to eliminate primary and secondary spherical aberrations when the outer edge is simply supported. As an example, the method is demonstrated using a 2-meter diameter aluminum mirror where surface deflections can have an appreciable effect at mid-to-near infrared wavelengths

mirror stiffness optimization↗

Spin-Controllable Dynamics in Defect-Engineered Carbon Nanotubes as Single Photon Emitters: Data-Driven Modeling and Computations

Quantum technologies, such as quantum computing and sensing, require efficient single-photon emission (SPE) sources that operate at room temperature in telecom wavelengths. While several materials can serve as SPE sources, no single platform meets all the criteria for efficiency, ambient operation, and scalability. Single-walled carbon nanotubes (SWCNTs) with covalently attached molecules offer a promising solution. Their SPE can be easily tuned via modifications of the SWCNT's diameter, chirality, and bonded molecules, enabling emission across near-IR to telecom wavelengths at ambient conditions. However, to fully realize the potential of SWCNTs and unlock their quantum capabilities, a deeper understanding of how structural defects from molecular adducts affect their emission and competing photoexcited processes is essential. To address this gap in our knowledge, this project combined quantum chemistry calculations with data-driven methods of cheminformatics (QSAR) and machine learning (ML). The developed computational approaches have provided several design strategies for covalent functionalization of SWCNTs to improve their optical response. The collaboration with Los Alamos National Lab (LANL) enabled direct comparison of computational and experimental data, facilitating method validation. This partnership was enhanced through access to LANL's Center for Integrated Nanotechnologies (CINT) utilizing User Facility Program and summer internships, which provided three NDSU graduate students with hands-on experience at LANL. The outcomes of this project included (1) Advancing the current stage of computational methods in accurate modeling of non-adiabatic spin-dependent photoexcited dynamics and its applicability to nanosystems consisting of thousands of atoms, realized as open-access codes linked to existing DFT-based software; (2) Establishing the relationship between the structure of adducts and SWCNTs and intrinsic excitonic and spin properties of defect states for guiding novel synthetic strategies and experimental probes of chemically functionalized SWCNTs as near-IR emitting materials; (3) Generating virtual libraries of hypothetical functionalized SWCNTs for virtual screening of their chemical structures and optical properties, leveraging new functionalities of SWCNTs; (4) Offering a unique experience for NDSU graduate students that prepared them for future scientific careers related to materials modeling and big data processing. These results were summarized in 12 published journal papers and 3 recently submitted papers. One of a key finding is that the position of defect sites on the SWCNT surface primarily drives the emission redshift (up to 100 meV), while the polarity of the defect-inducing molecules has a much smaller effect (~10 meV). However, the electron-donating or withdrawing properties of a molecule influence selecting reactivity of defect sites. These insights important for optimizing synthetic protocols for desired emissions in SWCNTs. We also revealed that the interaction between two defects at various positions on the SWCNT enhances the redshift and optical activity of states, favoring strong near-IR emission. This suggests that manipulations in defect concentrations is a promising strategy for controlling efficient emission. Mostly important, the defect position was found controllable by the spin states of photoexcited intermediates: Excited aromatic molecules form ortho defects with SWCNTs at their singlet states in the presence of oxygen, while oxygen-free conditions favor para defects via the triplet-state mechanism. Additionally, a heat-activated [2+2] cycloaddition reaction facilitates divalent defect formation with fewer bonding positions that narrows emission bands. These groundbreaking findings have been experimentally validated and significantly advance our understanding of defect chemistry in SWCNTs. Using a novel encoding technique and 3D-MoRSE descriptors, we developed highly accurate ML/QSAR models to predict both the 3D structure and optical properties of SWCNTs with chemical defects. This model enabled the creation of a virtual library of 125,556 structures, providing new insights into the relationship between SWCNT-defect structure and emission.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

A Machine Learning-based Reliability Evaluation Model for Integrated Power-Gas Systems

This article proposes a hybrid machine learning method for the reliability evaluation of integrated power-gas systems (IPGS) under the uncertain component failure probability distributions. The Random Forest (RF) method is designed to select important features to solve the insufficient quantity of data and the curse of dimensionality problems. The Extreme Gradient Boosting (XGBoost) regression algorithm is developed to quantify the relationship between the uncertain parameters and reliability metrics. Moreover, a ten-fold cross-validation method is employed to further improve the accuracy of the regression model. Simulation results on three test systems show that the proposed method can achieve high accuracy for the reliability evaluation.

24 POWER TRANSMISSION AND DISTRIBUTION↗

IEEE/NASA Workshop on Leveraging Applications of Formal Methods, Verification, and Validation

This volume contains the Preliminary Proceedings of the 2005 IEEE ISoLA Workshop on Leveraging Applications of Formal Methods, Verification, and Validation, with a special track on the theme of Formal Methods in Human and Robotic Space Exploration. The workshop was held on 23-24 September 2005 at the Loyola College Graduate Center, Columbia, MD, USA. The idea behind the Workshop arose from the experience and feedback of ISoLA 2004, the 1st International Symposium on Leveraging Applications of Formal Methods held in Paphos (Cyprus) last October-November. ISoLA 2004 served the need of providing a forum for developers, users, and researchers to discuss issues related to the adoption and use of rigorous tools and methods for the specification, analysis, verification, certification, construction, test, and maintenance of systems from the point of view of their different application domains.

Margaria, Tiziana↗

guideline36_conformance_test 0.1

The American Society of Heating, Refrigerating and Air-Conditioning Engineers (ASHRAE) has established a set of standardized high performance sequences of operation for Heating, Ventilation and Air Conditioning (HVAC) systems in buildings through their "Guideline 36". In order to achieve the intended performance, these sequences must be translated and programmed accurately in the Building Automation System (BAS) controllers. Standardizing these sequences will allow for a more efficient product delivery mechanism where the sequences are programmed and tested centrally by each manufacturer, and then distributed to their dealers/engineering contractors. This approach would minimize the need for each installer to re-interpret and program the sequences, reduces risk of errors, and reduces the time required for commissioning in the field. To achieve this goal, a performance validation method is needed to provide independent confirmation that each manufacturer has programmed the Guideline 36 sequences accurately. A standardized method of test would also avoid the need for manual interpretation (and the associated human variability) that is required with typical functional testing approaches by automating the inputs and the range of expected responses. This software "guideline36_conformance_test" has been developed to conduct standardized, repeatable and manufacturer independent tests to validate that a BAS controller has been programmed in conformance with Guideline 36. Manufacturers would provide the controller (or the control program) and the software would run a suite of tests by setting a set of inputs to the controller and verifying the output signals from the controller matches the expected output as set by Guideline 36.

Pritoni, Marco↗

Advancing Offshore Wind Resource Characterization Using Buoy-based Observations

As countries continue to implement sustainable and renewable energy goals, the need for affordable low-carbon technologies, including those related to offshore wind energy, is accelerating. The U.S. federal government recognizes the environmental and economic benefits of offshore wind development and is taking the necessary steps to overcome critical challenges facing the industry to realize these benefits. The U.S. Department of Energy (DOE) is investing in buoy-mounted lidar systems to facilitate offshore measurement campaigns that will advance our understanding of the offshore environment and provide the observational data needed for model validation, particularly at hub height where offshore observations are particularly lacking. On behalf of the DOE, Pacific Northwest National Laboratory manages a Lidar Buoy Program that facilitates meteorological and oceanographic data collection using validated methods to support the U.S. offshore wind industry. Since being acquired in 2014, two DOE lidar buoys have been deployed on the U.S. east and west coasts; and their data represent the first publicly available multi-seasonal hub height data to be collected in U.S. waters. In addition, the buoys have undergone performance testing, significant upgrades, and a lidar validation campaign to ensure the accuracy and reliability of the lidar data needed to support wind resource characterization and model validation. The Lidar Buoy Program is providing valuable offshore data to the wind energy community, while focusing data collection on areas of acknowledged high priority.

offshore wind energy, lidar buoy, wind resource ch↗

Construction of Women’s All-Around Speed Skating Event Performance Prediction Model and Competition Strategy Analysis Based on Machine Learning Algorithms

Introduction Accurately predicting the competitive performance of elite athletes is an essential prerequisite for formulating competitive strategies. Women’s all-around speed skating event consists of four individual subevents, and the competition system is complex and challenging to make accurate predictions on their performance. Objective The present study aims to explore the feasibility and effectiveness of machine learning algorithms for predicting the performance of women’s all-around speed skating event and provide effective training and competition strategies. Methods The data, consisting of 16 seasons of world-class women’s all-around speed skating competition results, used in the present study came from the International Skating Union (ISU). According to the competition rules, distinct features are filtered using lasso regression, and a 5,000 m race model and a medal model are built using a fivefold cross-validation method. Results The results showed that the support vector machine model was the most stable among the 5,000 m race and the medal models, with the highest AUC (0.86, 0.81, respectively). Furthermore, 3,000 m points are the main characteristic factors that decide whether an athlete can qualify for the final. The 11th lap of the 5,000 m, the second lap of the 500 m, and the fourth lap of the 1,500 m are the main characteristic factors that affect the athlete’s ability to win medals. Conclusion Compared with logistic regression, random forest, K-nearest neighbor, naive Bayes, neural network, support vector machine is a more viable algorithm to establish the performance prediction model of women’s all-around speed skating event; excellent performance in the 3,000 m event can facilitate athletes to advance to the final, and athletes with outstanding performance in the 500 m event are more likely competitive for medals.

Liu, Meng↗

A generalized vortex lattice method for subsonic and supersonic flow applications

If the discrete vortex lattice is considered as an approximation to the surface-distributed vorticity, then the concept of the generalized principal part of an integral yields a residual term to the vorticity-induced velocity field. The proper incorporation of this term to the velocity field generated by the discrete vortex lines renders the present vortex lattice method valid for supersonic flow. Special techniques for simulating nonzero thickness lifting surfaces and fusiform bodies with vortex lattice elements are included. Thickness effects of wing-like components are simulated by a double (biplanar) vortex lattice layer, and fusiform bodies are represented by a vortex grid arranged on a series of concentrical cylindrical surfaces. The analysis of sideslip effects by the subject method is described. Numerical considerations peculiar to the application of these techniques are also discussed. The method has been implemented in a digital computer code. A users manual is included along with a complete FORTRAN compilation, an executed case, and conversion programs for transforming input for the NASA wave drag program.

Miranda, L. R.↗

Validation of an inverse model of zone air heat balance

Our work introduces the validation method and results of an inverse model of zone air heat balance. The inverse model, implemented in EnergyPlus and published in a previous article [1], calculates highly uncertain model parameters such as internal thermal mass and infiltration airflow by inversely solving the zone air heat balance equation using the easy-to-measure zone air temperature data. The paper provides technical details of validation from the experiments using LBNL's Facility for Low Energy eXperiment in Buildings (FLEXLAB) that measures zone air temperature under the controlled experiment of two levels of internal mass and four levels of infiltration airflow. The simulation results of the zone infiltration airflow and internal thermal mass from the inverse model agree well with the measured data from the FLEXLAB experiments. The validated inverse model in EnergyPlus can be utilized to enhance the energy modeling of existing buildings that enables energy performance assessments for energy efficiency improvements.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Follow That Satellite: EO-1 Maneuvers into Closed Formation With Landsat-7

As the Landsat-7 spacecraft continued NASA's historic program of earth imaging, begun over three decades ago, NASA launched the Earth Observing-1 (EO-1) spacecraft carrying examples of the next generation of Landsat-7 instruments. The validation method for these instruments was to have EO-1 fly in a close formation behind Landsat-7 on the same World Reference System path. From that formation hundreds of near coincident images would be taken by each spacecraft and compared to evaluate improvements in the EO-1 instruments. This paper will address the mission analysis required to launch and maneuver EO-1 into the formation with Landsat-7 where instrument validation was to occur plus a summary of completing the formation acquisition. EO-1 is required to operate one minute +/- 6 seconds behind Landsat-7 during the period of co-fly imaging with a cross track separation of within + 3 kilometers. This separation time can also be stated as a one minute +/- 6 seconds time difference in the Mean Local Time (MLT) at the descending nodes. Achieving the required MLT is heavily dependent on the time of launch. The EO-1 launch window, which had to accommodate the dual payloads of EO-1 and SAC-C, was very limited ranging from 0 to 22 seconds over the 16 day Landsat-7 WRS repeat cycle during which EO-1 was launched. Each EO-1 launch opportunity that occurred on a different day of a Landsat-7 16 day repeat cycle required a separate and distinct maneuver profile. These profiles varied significantly in duration and amount of onboard propellant required to achieve them. EO-1 launched on a day judged to have "medium" resource requirements for achieving the formation with Landsat-7. To phase EO-1 one minute behind Landsat-7 in the along track direction, a series of altitude adjusts separated by specific drift intervals were executed. Additional maneuvers slightly changed the EO-1 inclination to maintain the MLT requirements. Orbit maneuvers were planned and executed within errors of less than 1.5 percent and propellant usage was near nominal consuming 3.4 kilograms out of a launch and early orbit budget of 11 kilograms. The pre-launch 3 -sigma propellant budget allowed for 1+ years of EO-1 mission life. The success of the EO-1 launch and early orbit operations provided sufficient propellant for nearly 4 years of on orbit operations. Special action taken during the EO-1 maneuver period involved some maneuver re-planning to reduce concerns about a potential close approach between EO-1 and Landsat-7. The result of this re-planning was a safer close approach and improvement in future formation acquisition planning.

DeFazio, Robert↗

Follow That Satellite: EO-1 Maneuvers Into Close Formation With Landsat-7

As the Landsat-7 (LS-7) spacecraft continued NASA's historic program of earth imaging begun over three decades ago, NASA launched the Earth Observing-1 (EO-1) spacecraft carrying examples of the next generation of LS instruments. The validation method for these instruments was to have EO-1 fly in a close formation behind LS-7 on the same World Reference System (WRS) path. From that formation hundreds of near-coincident images would be taken by each spacecraft and compared to evaluate improvements in the EO-1 instruments. This paper will address the mission analysis required to launch and maneuver EO-1 into the formation with LS-7 where instrument validation was to occur plus a summary of completing the formation acquisition. Each EO-1 launch opportunity that occurred on a different day of a LS-7 16-day repeat cycle required a separate and distinct maneuver profile.

DeFazio, Robert L.↗

A Physics-Based Spatial Wake Interactional Model of Fixed-Wing Aircraft and Rotorcraft for Urban Air Mobility

This paper presents a study of a physics-based spatial wake interactional model for urban air mobility. A modeling method for spatial wake interaction of fixed-wing aircraft and rotorcraft is presented. The method validates an existing wake vortex model with flight data from the existing literature. The model is then adopted for both fixed-wing aircraft and rotorcraft. A lift circulation model is developed for rotorcraft to account for unsteady aerodynamics and the compressibility effect. This lift circulation model provides more realistic estimate of lift circulation for rotorcraft for used in wake vortex modeling. A vehicle-building wake interaction is studied using the method of image. The effects of wake vortex encounters on aerodynamic loads, stability, and control are examined. A flight control simulation is performed to demonstrate recovery during a simulated wake vortex encounter.

Wake Vortex Encounter↗

Modeling Weather Impact on Airport Arrival Miles-in-Trail Restrictions

When the demand for either a region of airspace or an airport approaches or exceeds the available capacity, miles-in-trail (MIT) restrictions are the most frequently issued traffic management initiatives (TMIs) that are used to mitigate these imbalances. Miles-intrail operations require aircraft in a traffic stream to meet a specific inter-aircraft separation in exchange for maintaining a safe and orderly flow within the stream. This stream of aircraft can be departing an airport, over a common fix, through a sector, on a specific route or arriving at an airport. This study begins by providing a high-level overview of the distribution and causes of arrival MIT restrictions for the top ten airports in the United States. This is followed by an in-depth analysis of the frequency, duration and cause of MIT restrictions impacting the Hartsfield-Jackson Atlanta International Airport (ATL) from 2009 through 2011. Then, machine-learning methods for predicting (1) situations in which MIT restrictions for ATL arrivals are implemented under low demand scenarios, and (2) days in which a large number of MIT restrictions are required to properly manage and control ATL arrivals are presented. More specifically, these predictions were accomplished by using an ensemble of decision trees with Bootstrap aggregation (BDT) and supervised machine learning was used to train the BDT binary classification models. The models were subsequently validated using data cross validation methods. When predicting the occurrence of arrival MIT restrictions under low demand situations, the model was able to achieve over all accuracy rates ranging from 84% to 90%, with false alarm ratios ranging from 10% to 15%. In the second set of studies designed to predict days on which a high number of MIT restrictions were required, overall accuracy rates of 80% were achieved with false alarm ratios of 20%. Overall, the predictions proposed by the model give better MIT usage information than what has been currently provided under current day operations. Traffic flow managers can use these predictions to identify potential MIT restrictions to eliminate (e.g., those occurring during low arrival demand periods), and to determine the days in which a significant number of restrictions may be required

Operation↗

A coupled polygonal DEM-LBM technique based on an immersed boundary method and energy-conserving contact algorithm

Here we present a framework of coupling polygonal discrete elements and the lattice Boltzmann method using a direct forcing immersed boundary scheme. In this technique, an energy-conserving contact algorithm is utilized to handle the interactions between convex and concave polygonal particles. The surface of a polygon is represented by discrete boundary points which includes vertices of polygonal particles and/or points interpolated from vertices. The fluid-particle coupling is obtained through the interactions of the boundary points and the imaginary fluid particles using a direct-forcing immersed boundary method. Validations of the proposed technique are made by single particle and multiple arbitrarily-shaped particle sedimentation tests, and the effect of particle shape is illustrated using a drafting-kissing-tumbling benchmark.

42 ENGINEERING↗

Processing Aleatory and Epistemic Uncertainties in Experimental Data From Sparse Replicate Tests of Stochastic Systems for Real-Space Model Validation

This paper presents a practical methodology for propagating and processing uncertainties associated with random measurement and estimation errors (that vary from test-to-test) and systematic measurement and estimation errors (uncertain but similar from test-to-test) in inputs and outputs of replicate tests to characterize response variability of stochastically varying test units. Also treated are test condition control variability from test-to-test and sampling uncertainty due to limited numbers of replicate tests. These aleatory variabilities and epistemic uncertainties result in uncertainty on computed statistics of output response quantities. The methodology was developed in the context of processing experimental data for “real-space” (RS) model validation comparisons against model-predicted statistics and uncertainty thereof. The methodology is flexible and sufficient for many types of experimental and data uncertainty, offering the most extensive data uncertainty quantification (UQ) treatment of any model validation method the authors are aware of. It handles both interval and probabilistic uncertainty descriptions and can be performed with relatively little computational cost through use of simple and effective dimension- and order-adaptive polynomial response surfaces in a Monte Carlo (MC) uncertainty propagation approach. A key feature of the progressively upgraded response surfaces is that they enable estimation of propagation error contributed by the surrogate model. Sensitivity analysis of the relative contributions of the various uncertainty sources to the total uncertainty of statistical estimates is also presented. Finally, the methodologies are demonstrated on real experimental validation data involving all the mentioned sources and types of error and uncertainty in five replicate tests of pressure vessels heated and pressurized to failure. Simple spreadsheet procedures are used for all processing operations.

97 MATHEMATICS AND COMPUTING↗

Bayesian Assimilation of Multiscale Precipitation Data and Sparse Ground Gauge Observations in Mountainous Areas

Estimating the spatial distribution of precipitation is important for understanding ecohydrological processes at catchment scales. However, this estimation is difficult in mountainous areas because ground-based observation stations are often sparsely located and do not represent the spatial variability of precipitation. In this study, we develop a Bayesian assimilation method based on data collected on the Tibetan Plateau from 1980 to 2014 to estimate monthly and daily precipitation. To accomplish this, point-scale ground meteorological observations are combined with large-scale precipitation data such as satellite observations or reanalysis data. First, we remove the terrain effects from ground observations by fitting the precipitation data as functions of elevation, and then we spatially interpolate the residuals to 5-km-resolution grids to obtain monthly and daily precipitation. Additionally, we use Tropical Rainfall Measuring Mission (TRMM) satellite observations and ERA-Interim reanalysis data. Cross-validation methods are used to evaluate our method; the results show that our method not only captures the change in precipitation with terrain but also significantly reduces the associated uncertainty. The improvements are more evident in the main river source areas on the edge of the Tibetan Plateau, where elevation changes dramatically, and in high-altitude areas, where the ground gauges are sparse compared with those in low-altitude areas. Our assimilation method is applicable to other regions and is particularly useful for mountainous watersheds where ground meteorological stations are sparse and precipitation is considerably influenced by terrain.

54 ENVIRONMENTAL SCIENCES↗