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At least 127 records · Page 7

Diagnostic Evaluation of the IS1081-Targeted Real-Time PCR for Detection of Mycobacterium bovis DNA in Bovine Milk Samples

The ability of Mycobacterium bovis (M. bovis) to survive in bovine milk has emerged as a serious public health concern. The first objective of this study was to evaluate the diagnostic utility of IS1081-targeted real-time PCR for the detection of M. bovis DNA in different fractions of bovine milk. In a model study, bovine milk samples were spiked with serially diluted M. bovis BCG to investigate the detection limit of M. bovis DNA in whole milk and milk fractions (cream, pellet, and pellet + cream combined) using IS1081 real-time PCR. The assay was then used to detect M. bovis DNA in whole milk and milk fractions from naturally infected animals. The results showed that the IS1081 real-time PCR was more sensitive when detecting M. bovis DNA in the cream layer alone and cream + pellet combined compared to whole milk or the pellet alone. While PCR-based diagnostic assays for the detection of M. bovis in milk samples provide a quicker diagnostic tool for bovine tuberculosis, safe processing, and handling of M. bovis-infected milk samples remain a challenge and pose a human health risk. PrimeStore Molecular Transport Medium (MTM) has been shown to rapidly inactivate infected specimens while preserving nucleic acid for subsequent Molecular analysis. Therefore, the secondary objective of this study was to evaluate the ability of MTM to inactivate M. bovis BCG in spiked milk samples as well as its ability to preserve BCG DNA for the PCR assay. The results showed that MTM can successfully inactivate BCG alone or in spiked milk samples while preserving DNA for the PCR assay. The CT values of M. bovis BCG alone and spiked milk samples aliquoted in MTM and without MTM were similar at various dilutions. Taken together, our results indicate that using DNA extracted from the milk cream fraction alone or combined milk cream and pellet improved the recovery rate of M. bovis DNA in bovine milk samples. MTM has the potential to provide a safe and rapid sample processing tool for M. bovis inactivation in milk samples and preserve DNA for molecular diagnostics.

59 BASIC BIOLOGICAL SCIENCES↗

Measuring recoiling nucleons from the nucleus with the future Electron Ion Collider

Short range correlated nucleon-nucleon (NN) pairs are an important part of the nuclear ground state. They are typically studied by scattering an electron from one nucleon in the pair and detecting its spectator correlated partner (spectator-nucleon tagging). The Electron Ion Collider (EIC)should be able to detect these nucleons, since they are boosted to high momentum in the lab frame by the momentum of the ion beam. To determine the feasibility of these studies with the planned EIC detector configuration, we have simulated quasi-elastic scattering for two electron and ion beam energy configurations: 5 GeV electrons and 41 GeV/A ions, and 10 GeV electrons and 110 GeV/A ions. We show that the knocked-out and recoiling nucleons can be detected over a wide range of initial nucleon momenta. We also show that these measurements can achieve much larger momentum transfers than current fixed target experiments. By detecting both low and high initial-momentum nucleons,the EIC will provide the data that should allow scientists to definitively show if the EMC effect and short-range correlation are connected, and to improve our understanding of color transparency

Hauenstein, F. (ORCID:0000000212652212)↗

Remote sensing detection enhancement

Big Data in the area of Remote Sensing has been growing rapidly. Remote sensors are used in surveillance, security, traffic, environmental monitoring, and autonomous sensing. Real-time detection of small moving targets using a remote sensor is an ongoing, challenging problem. Since the object is located far away from the sensor, the object often appears too small. The object’s signal-to-noise-ratio (SNR) is often very low. Occurrences such as camera motion, moving backgrounds (e.g., rustling leaves), low contrast and resolution of foreground objects makes it difficult to segment out the targeted moving objects of interest. Due to the limited appearance of the target, it is tough to obtain the target’s characteristics such as its shape and texture. Without these characteristics, filtering out false detections can be a difficult task. Detecting these targets, would often require the detector to operate under a low detection threshold. However, lowering the detection threshold could lead to an increase of false alarms. In this paper, the author will introduce a new method that improves the probability to detect low SNR objects, while decreasing the number of false alarms as compared to using the traditional baseline detection technique.

47 OTHER INSTRUMENTATION↗

Platform for Automated Anomaly Detection in the Mercury Process System at the Target System in the Spallation Neutron Source

The Spallation Neutron Source (SNS) at Oak Ridge National Laboratory accelerates proton beams, which are directed toward a mercury target to generate the world’s most intense neutron beams via spallation. The target system consists of several interconnected subsystems and accounts for a major share of the facility’s overall downtime. Early detection of anomalies in the target system response can thus provide the possibility of taking corrective actions to reduce downtime. Accelerator facilities have largely focused on the beam side for data-driven fault prognostics. On the target side, SNS relies on operational shift technicians (OSTs), who respond to alarms and manually flag anomalies onto the System Tracking and Reliability (STAR) platform. This paper presents one of the first studies of using machine learning (ML) to automate anomaly detection in the target system. The study focused on the mercury process system as the first use case and employed reconstruction-based anomaly detection on minutely sampled time series signals. The pipeline was integrated into the STAR platform to autonomously rank and flag anomalies every week. The STAR platform provides a user interface for the OSTs to evaluate the flagged anomalies, thereby incorporating human feedback.

Anomaly detection↗

Chemical Imaging for In Situ Detection and Discrimination of Aquatic Toxins Targeting Voltage Gated Sodium Channels

Biologically derived neurotoxins from cyanobacteria and algae impact environmental resources in addition to being considered a potential biological threat to human and animal health. Activity based assays are essential to detecting and responding to toxic neurotoxin events either naturally occurring or deliberate. Two toxins of interest include saxitoxin and brevetoxin. These toxins bind to and alter the function of voltage-gated sodium channels (NaV channels) which are essential for generating cell membrane action potential. We report the development and refinement of a System for Analysis at Liquid Vacuum Interface (SALVI) to assess the functional activity of saxitoxin and brevetoxin. This approach utilizes a vacuum-compatible microfluidic reactor that permits analysis at the liquid vacuum interface of human derived cells with a neurotoxin of interest in a biologically relevant environment.

54 ENVIRONMENTAL SCIENCES↗

Microfluidic platform for multiplexed detection in single cells and methods thereof

The present invention relates to a microfluidic device and platform configured to conduct multiplexed analysis within the device. In particular, the device allows multiple targets to be detected on a single-cell level. Also provided are methods of performing multiplexed analyses to detect one or more target nucleic acids, proteins, and post-translational modifications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

An Intelligent Adaptable Monitoring Package. Final Report

The “Intelligent Adaptable Monitoring Package” project was a four-year effort that demonstrated the feasibility of integrated sensing packages at tidal and wave energy sites. Such integration is generally required by the breadth of sensors required to understand environmental effects at marine energy sites and the operational difficulty of deploying, maintaining, and recovering such sensors. Over the course of the project, the Adaptable Monitoring Package (AMP) was deployed in multiple settings, each corresponding to a project budget period: - Budget Period 1: Demonstration of cabled deployment at Pacific Northwest National Laboratory’s Marine Science Laboratory. The deployment highlighted AMP hardware endurance over a 4-month deployment in a tidally-dominated environment and laid the groundwork for machine learning algorithms to detect and classify targets present in active sonar data. - Budget Period 2: Demonstration of an autonomous deployment at PacWave South off the coast of Newport, Oregon. The deployment highlighted the stability of AMP hardware and software, with the autonomous package collecting data on a duty cycle over a 1.5-month deployment. - Budget Period 3: Demonstration of an autonomous deployment powered by a wave energy converter at the U.S. Navy’s Wave Energy Test Site. The deployment highlighted the potential of wave energy to power ocean observatories and led to the development of machine learning algorithms to detect and classify targets in optical camera data. In aggregate, this project’s greatest success was demonstrating the AMP’s flexibility in a range of deployment scenarios. Each budget period represented a “first of a kind” demonstration of integrated instrumentation – cabled AMP, autonomous AMP, wave-energy powered AMP – and each deployment helped to identify and set goals for the next. Further, despite the exploratory nature of these deployments, each one achieved high system up-time and proved that flexible integration of multiple sensors in a single package represents a viable strategy for marine energy environmental monitoring. The key lessons learned from the project are: - Without continuous power, either from a shore cable or in situ source, many of the benefits of integration are lost (If continuous power is not available, the ability to detect rare events is lost, as is the ability to minimize the risk of behavioral changes through adaptive sensing. However, even on a duty cycle, there is still value in being able to acquire synchronous data from multiple sensors.); and - Observations from a moving platform present substantially greater data processing challenges than those from stationary platforms. Finally, these deployments also demonstrate an important truth: successful integration alone does not guarantee that relevant data are collected. To grow the knowledge base about environmental interactions with marine energy converters, integrated systems, like the AMP, need to include the right sensor mix and connect the data pipelines to effective processing algorithms. These deployments establish a strong foundation for future collaborations with the environmental research community: not only to understand the environmental effects of marine energy, but also to improve our general ability to study life in the sea.

16 TIDAL AND WAVE POWER↗

Confirmation and Quantification of Gas Flow into Capsules

Inertial confinement fusion experiments require a fuel filled target. At the National Ignition Facility (NIF), these targets are filled through a capsule fill tube assembly (CFTA). While fabricating these assemblies, it is possible to plug the fill tube with glue, which would render the CFTA and eventual target unusable. Historically, this plugging was first detectable in a finished target after considerable resources had been expended. Herein, this paper presents a method for not only detecting a plug in the fill tube before the CFTA is assembled into a target, but also characterizing gas flow through the fill tube, which can help NIF operations prepare to expend each target.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Detection of active and latent infections with microfluidic devices and systems thereof

The present invention relates to methods of detecting one or more targets of interest in a sample. In one instance, the target can be correlated to an active infection (e.g., by a virus and/or a bacterium). Methods can include treating the sample with a dissociation agent, thereby releasing the target of interest for more accurate detection (e.g., by use of a sedimentation-based centrifugal microfluidic devices). Also described herein are microfluidic devices and systems for use with a dissociation agent.

59 BASIC BIOLOGICAL SCIENCES↗

PathTrace and MPVEASI: A Path Analysis Comparative Validation Study

Developed in 2018, PathTrace is a software package built with the intention of making path analysis simple and intuitive. PathTrace is a top-down pathway analysis software where a user is able to explore vulnerable pathways into a facility. The intention of utilizing a software tool like PathTrace is to characterize an existing physical protection system (PPS) and to upgrade the system to achieve a high level of response interruption, or probability of interruption (P I ) of the adversary. There are four steps for conducting path analysis using PathTrace. The first step is to identify an image to use to build the model and scale the model within PathTrace using a section of known distance (wall or fence perimeter, for example). The scaling process will produce a grid of cells through which the user is able to build a model. The second step is to fill out the grid of cells with four categories of materials: Barriers, Detection Areas, Jumps, and Targets. These materials apply associated delay and detection values to the cells in which they are applied. The third step is to represent the adversary and response forces. The adversaries are represented by their capabilities in interacting with the materials identified in step two, and the response is represented by how quickly they will be able to respond to an adversary attack. Finally, the user is able to take all of the information from the previous three steps and perform a Most Vulnerable Path (MVP) analysis. In this stage, the user is able to visualize vulnerable adversary pathways and reason about how to upgrade these pathways to provide a high level of P I .

97 MATHEMATICS AND COMPUTING↗

NuSTAR broad-band X-ray observation campaign of energetic pulsar wind nebulae in synergy with VERITAS, HAWC and Fermi gamma-ray telescopes

We report recent progress on the on-going NuSTAR observation campaign of 8 TeV-detected middle-aged pulsar wind nebulae (PWNe). This campaign constitutes a major part of our NuSTAR study of some of the most energetic TeV sources in our Galaxy detected by VERITAS and HAWC. NuSTAR is the first focusing X-ray telescope operating above 10 keV in space with sub-arcminute angular resolution. Broad-band X-ray imaging and spectroscopy data, obtained by NuSTAR, allow us to probe sub-PeV electron populations through detecting synchrotron X-ray radiation. Our targets include PeVatron candidates detected by HAWC, the Boomerang nebula, PWNe crushed by supernova remnant shocks (or relic PWNe) and G0.9‚0.1 in the Galactic Center. Combined with Fermi-LAT data and available TeV data, we aim to provide a complete, multi-wavelength view of a diverse class of middle-aged (~10–100 kyrs old) PWNe. Our NuSTAR analysis detected hard X-ray emission from the Eel and Boomerang PWNe and characterized their broad-band X-ray spectra most accurately. We plan to apply both time-evolution and multi-zone PWNe models to multi-wavelength spectral energy distribution (SED) data over the radio, X-ray, GeV and TeV bands. In this proceeding, we will review our observation campaign and discuss the preliminary results for some PWNe.

79 ASTRONOMY AND ASTROPHYSICS↗

Clinical 6 MV X-Ray Facility Photo-Neutron/Fission Interrogations with TMFD Sensors

Detection of several targets (U, Be, D2O) of interest to national security has been achieved at Purdue University’s 6 MV (~104 R/h) X-Ray clinical linear accelerator (CLINAC), from photoneutron/fission induced neutron signatures using a Centrifugally Tensioned Metastable Fluid Detector (CTMFD). Traditional neutron detection schemes were saturated and ineffective under the intense (to ~104 R/h) photon environment; however, the CTMFD sensor technology was capable of measuring the relatively insignificant (~10-12x lower intensity) neutron field produced from 6 MeV-end point X-Ray beam interactions with the CLINAC components and surroundings. This is in stark contrast to published results based on conventional belief for immeasurable neutron dose in 6 MV CLINAC facilities. Photoneutron and photofission neutron production rates were detected and analyzed at various standoffs from the isocenter, with and without special nuclear material (SNM) related targets ranging in mass from 5 g of Be, to ~0.6 kg of UO2. It was confirmed that 6 MV X-Ray photons do result in measurable neutron dose above normal cosmic background. Additionally, in threshold mode, the CTMFD operating under a tensioned metastable pressure of -5bar, enabled conclusive rejection of background photoneutrons, while enabling the rapid detection of: Be, D2O, C and U targets within seconds to minutes while operating in and around 104 R/h photon fields.

Ozerov, Stepan↗

DELVE-DEEP Survey: The Faint Satellite System of NGC 55

We report the first comprehensive census of the satellite dwarf galaxies around NGC 55 (2.1 Mpc) as a part of the DECam Local Volume Exploration DEEP (DELVE-DEEP) survey. NGC 55 is one of four isolated, Magellanic analogs in the Local Volume around which DELVE-DEEP aims to identify faint dwarfs and other substructures. We employ two complementary detection methods: one targets fully resolved dwarf galaxies by identifying them as stellar overdensities, while the other focuses on semiresolved dwarf galaxies, detecting them through shredded unresolved light components. As shown through extensive tests with injected galaxies, our search is sensitive to candidates down to M V ≲ −6.6 and surface brightness μ ≲ 28.5 mag arcsec 2 , and ∼80% complete down to M V ≲ −7.8. We do not report any new confirmed satellites beyond two previously known systems, ESO 294–010 and NGC 55-dw1. We construct the satellite luminosity function of NGC 55 and find it to be consistent with the predictions from cosmological simulations. As one of the first complete luminosity functions for a Magellanic analog, our results provide a glimpse of the constraints on low-mass-host satellite populations that will be further explored by upcoming surveys, such as the Vera C. Rubin Observatory’s Legacy Survey of Space and Time.

Medoff, Jonah [Univ. of Chicago, IL (United States↗

Sr and Co Vapor-Phase Transport from LSCF Cathodes

A series of tests were performed to differentiate between surface diffusion and vapor-phase diffusion of chemical species from LSCF cathode material at typical sintering temperatures (up to 1100°C) in SOFC production. A GDC source substrate was printed with LSCF and separated by an air gap from a YSZ target substrate. Various geometries with long surface paths were employed to reduce the possibility of surface transport. Sr and Co were detected on the target substrates via energy dispersive spectroscopy (EDS) and x-ray photoelectron spectroscopy (XPS), including spatially resolved XPS. These results support a vapor-phase transport mechanism for Sr and Co. Sintering conditions and barrier layer requirements may need to be revisited to prevent the formation of undesired strontium zirconate at cathode/electrolyte interface due to vapor-phase transport.

vapor phase transport, SOFC cathode, Sr transport↗

Kinetic analysis of Cas12a and Cas13a RNA-Guided nucleases for development of improved CRISPR-Based diagnostics

Bacterial CRISPR systems provide acquired immunity against invading nucleic acids by activating RNA-programmable RNases and DNases. Cas13a and Cas12a enzymes bound to CRISPR RNA (crRNA) recognize specific nucleic acid targets, initiating cleavage of the targets as well as non-target (trans) nucleic acids. Here, we examine the kinetics of single-turnover target and multi-turnover trans-nuclease activities of both enzymes. High-turnover, non-specific Cas13a trans-RNase activity is coupled to rapid binding of target RNA. By contrast, low-turnover Cas12a trans-nuclease activity is coupled to relatively slow cleavage of target DNA, selective for DNA over RNA, indifferent to base identity, and preferential for single-stranded substrates. Combining multiple crRNA increases detection sensitivity of targets, an approach we use to quantify pathogen DNA in samples from patients suspected of Buruli ulcer disease. Results reveal that these enzymes are kinetically adapted to play distinct roles in bacterial adaptive immunity and show how kinetic analysis can be applied to CRISPR-based diagnostics.

59 BASIC BIOLOGICAL SCIENCES↗

Window obscuration sensors for mobile gas and chemical imaging cameras

An infrared (IR) imaging system for determining a concentration of a target species in an object is disclosed. The imaging system can include an optical system including a focal plane array (FPA) unit behind an optical window. The optical system can have components defining at least two optical channels thereof, said at least two optical channels being spatially and spectrally different from one another. Each of the at least two optical channels can be positioned to transfer IR radiation incident on the optical system towards the optical FPA. The system can include a processing unit containing a processor that can be configured to acquire multispectral optical data representing said target species from the IR radiation received at the optical FPA. One or more of the optical channels may be used in detecting objects on or near the optical window, to avoid false detections of said target species.

Mallery, Ryan↗