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At least 127 records · Page 7

Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the United States National Science Foundation, National Institutes of Health, and Department of Energy, supports structural biologists and Protein Data Bank (PDB) data users around the world. The RCSB PDB, a founding member of the Worldwide Protein Data Bank (wwPDB) partnership, serves as the US data center for the global PDB archive housing experimentally-determined three-dimensional (3D) structure data for biological macromolecules. As the wwPDB-designated Archive Keeper, RCSB PDB is also responsible for the security of PDB data and weekly update of the archive. RCSB PDB serves tens of thousands of data depositors (using macromolecular crystallography, nuclear magnetic resonance spectroscopy, electron microscopy, and micro-electron diffraction) annually working on all permanently inhabited continents. RCSB PDB makes PDB data available from its research-focused web portal at no charge and without usage restrictions to many millions of PDB data consumers around the globe. It also provides educators, students, and the general public with an introduction to the PDB and related training materials through its outreach and education-focused web portal. This review article describes growth of the PDB, examines evolution of experimental methods for structure determination viewed through the lens of the PDB archive, and provides a detailed accounting of PDB archival holdings and their utilization by researchers, educators, and students worldwide.

59 BASIC BIOLOGICAL SCIENCES↗

The Detection of Monoclinic Zirconia and Non-Uniform 3D Crystallographic Strain in a Re-Oxidized Ni-YSZ Solid Oxide Fuel Cell Anode

The solid oxide fuel cell (SOFC) anode is often composed of nickel (Ni) and yttria-stabilized zirconia (YSZ). The yttria is added in small quantities (e.g., 8 mol %) to maintain the crystallographic structure throughout the operating temperatures (e.g., room-temperature to >800 °C). The YSZ skeleton provides a constraining structural support that inhibits degradation mechanisms such as Ni agglomeration and thermal expansion miss-match between the anode and electrolyte layers. Within this structure, the Ni is deposited in the oxide form and then reduced during start-up; however, exposure to oxygen (e.g., during gasket failure) readily re-oxidizes the Ni back to NiO, impeding electrochemical performance and introducing complex structural stresses. In this work, we correlate lab-based X-ray computed tomography using zone plate focusing optics, with X-ray synchrotron diffraction computed tomography to explore the crystal structure of a partially re-oxidized Ni/NiO-YSZ electrode. These state-of-the-art techniques expose several novel findings: non-isotropic YSZ lattice distributions; the presence of monoclinic zirconia around the oxidation boundary; and metallic strain complications in the presence of variable yttria content. This work provides evidence that the reduction–oxidation processes may destabilize the YSZ structure, producing monoclinic zirconia and microscopic YSZ strain, which has implications upon the electrode’s mechanical integrity and thus lifetime of the SOFC.

25 ENERGY STORAGE↗

Catalyst, structures, reactors, and methods of forming same

Structures, catalysts, and reactors suitable for use for a variety of applications, including gas-to-liquid and coal-to-liquid processes and methods of forming the structures, catalysts, and reactors are disclosed. The catalyst material can be deposited onto an inner wall of a microtubular reactor and/or onto porous support structures using atomic layer deposition techniques.

Moulton, Staci A.↗

Catalyst, structures, reactors, and methods of forming same

Structures, catalysts, and reactors suitable for use for a variety of applications, including gas-to-liquid and coal-to-liquid processes and methods of forming the structures, catalysts, and reactors are disclosed. The catalyst material can be deposited onto an inner wall of a microtubular reactor and/or onto porous support structures using atomic layer deposition techniques.

Moulton, Staci A.↗

Directional shock diode behavior through the interaction of geometric voids in engineered polymer assemblies

With the advent of additive manufacturing (AM) techniques, a new class of shockwave mitigation and structural supports has been realized through the hierarchical assembly of polymer materials. To date, there have been a limited number of studies investigating the role of structure on shockwave localization and whether AM offers a means to tailor shockwave behavior. Of particular interest is whether the mesoscopic structure can be tailored to achieve shockwave properties in one direction of impact vs the other. In this work, we illustrate directional response in engineered polymer foams. In situ time-resolved x-ray phase contrast imaging at the Advanced Photon Source was used to characterize these diode-like structures. This work offers a breakthrough in materials technology for the development of protective structures that require augmentation of shock in one direction while diminishing transmission in the opposite direction.

42 ENGINEERING↗

Conceptual Structural Design and Analysis of a 20 T Hybrid Cos Dipole for Future Particle Colliders

Here, to reach high collision energy for future high-energy particle colliders, like the Future Circular Collider (FCC) or the Muon Collider, it is required to achieve high field strength of the bending dipoles. Currently, the practical limit for Nb$_{\text{3}}$ Sn technology is around 16 T and, in order to further increase the magnetic field, the superconducting magnet community is considering High Temperature Superconductors (HTS), in particular Bi-2212 and REBCO conductors. However, their relevant higher cost has led the community to consider a hybrid approach where HTS materials are used in the high field region of the coils with so-called insert coils, and Low Temperature Superconductors are involved in the lower field part ($< $ 16 T) with so-called outsert coils. This paper describes the conceptual mechanical design of a 20 T hybrid cos$\theta$ dipole configuration. The high stress levels that the structure is facing due to the high magnetic field are discussed. Moreover, it presents the results of the optimization analysis of the shell-based support structure based on the key-and-bladder technology that provides the azimuthal pre-stress during room temperature assembly and cooldown to cryogenic temperatures. The aim of this work is to present a feasible design that satisfies the stress requirements.

D'Addazio, Marika [Politecnico di Torino (Italy); ↗

Thermally induced cracking on the massive concrete structure of the NSLS II synchrotron and its engineering remediation

Synchrotron accelerator facilities such as the NSLS II require extreme stability, both transient (short-term) and quasi-static (long-term) to achieve the desired resolution performance. Consequently, even μm-level movements, particularly differential movements between locations in the concrete structure supporting the accelerator electron beam lattice (storage ring) or high sensitivity experiments (experimental floor) will lead to serious degradation of its performance. Differential settlement in the overall structure or structural movement exceeding anticipated levels will inevitably degrade the performance and will require intervention. Presented in this paper are the design philosophy of the NSLS II ring structure favoring a monolithic ring, the observed cracking behavior of the young NSLS II concrete following casting and in combination with extreme ambient temperature fluctuation, the results of a non-linear, high-fidelity numerical analysis used to emulate the observed cracking and establish the driving mechanism, the numerical analysis-based identification of the crack-arresting solution and finally the implementation of the remediation solution and the long-term performance of the adopted engineering solution. The multi-stage process revealed that computational methods such as non-linear finite element methods have the potential of providing engineering guidance even when complex structures and in combination with non-linear materials, such as steel reinforcement and concrete are involved.

42 ENGINEERING↗

Pore-Edge Tailoring of Single-Atom Iron–Nitrogen Sites on Graphene for Enhanced CO 2 Reduction

Hosting atomically dispersed nitrogen-coordinated iron sites (Fe-N 4 ) on graphene offers unique opportunities for driving electrochemical CO 2 reduction reaction (CO 2 RR) to CO. However, the strong adsorption of *CO on the Fe-N 4 site embedded in intact graphene limits current density due to slow CO desorption process. Herein, we report how the manipulation of pore edges on graphene alters the local electronic structure of isolated Fe-N 4 sites and improves their intrinsic reactivity for prompting CO generation. We demonstrate that constructing holes on graphene basal plane to support Fe-N 4 can significantly enhance its CO 2 RR compared to the pore-deficient graphene-supported counterpart, exhibiting a CO Faradaic efficiency of 94% and a turnover frequency of 1630 h -1 at 0.58 V vs RHE. Mechanistic studies reveal that the incorporation of pore edges results in the downshifting of the d-band center of Fe sites, which weakens the strength of the Fe-C bond when the *CO intermediate adsorbs on edge-hosted Fe-N 4 , thus boosting the CO desorption and evolution rates. These findings suggest that engineering local support structure renders a way to design high-performance single-atom catalysts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Develop and verify soil/structure interaction for pile/foundation interaction

Phase II of the Offshore Code Comparison Collaboration, Continued, with Correlation and unCertainty (OC6) project was used to verify the implementation of a new soil-structure interaction (SSI) model for use within offshore wind turbine modeling software. The REDWIN Macro-element model implemented and verified in this study enables a computationally efficient way to model the linear and nonlinear SSI problem, including hysteretic damping, of a monopile structure. The modeling approach was integrated into several modeling tools and a series of increasingly complex simulations was conducted using the IEA 10MW reference turbine mounted on a monopile support structure to verify the coupling between the tools and the REDWIN Macro-element SSI model. This campaign includes only numerical verification between various software and modeling approaches so no experimental measurements are available. The load cases (LC) considered include: LC1 – static response of the tower and substructure LC2 – frequency and mode-shape analysis of the tower and substructure LC3 – response of the tower and substructure due to wind-only loading LC4 – response of the tower and substructure due to wave-only loading LC5 – response of the tower and substructure due to wind and wave loading. Detailed properties of the modeled system are found in the following reference, “Bergua, Roger, Amy Robertson, Jason Jonkman, and Andy Platt. 2021. "Specification Document for OC6 Phase II: Verification of an Advanced Soil-Structure Interaction Model for Offshore Wind Turbines.” Golden, CO: National Renewable Energy Laboratory. NREL/TP-5000-79938. https://www.nlr.gov/docs/fy21osti/79938.pdf. Details on the results from the OC6 Phase II project can be found in the following reference, “Bergua R, Robertson A, Jonkman J, et al. OC6 Phase II: Integration and verification of a new soil–structure interaction model for offshore wind design.” Wind Energy. 2022;25(5):793-810. doi:10.1002/we.2698

17 WIND ENERGY↗

Metallurgical Analysis of the High Flux Isotope Reactor (HFIR) Carrier Lifting Bails (Rev.1)

The dissolution rates of the aluminum alloys in the High Flux Isotope Reactor (HFIR) element carriers and the Material Test Reactor (MTR) L-bundles in the H-Canyon facility have been identified as the possible cause of extended dissolutions that result in significant time and financial expenditures. A study, carried out by Savannah River National Laboratory (SRNL) to determine relationships between the dissolution rates and the metallurgical properties of the aluminum alloy materials of construction of the HFIR carriers and the L-bundles, considered the dissolution rates of aluminum alloy (AA) series 1100, 6061, and 6063. The study determined that the aluminum alloy compositions played a principal role in the dissolution rate of the carrier/bundle components. Higher dissolution rates were correlated with lower concentrations of the minor element additions in the alloys and with specific element concentrations. Aluminum alloys 1100 and 6063 were found to have similar dissolution rates that were approximately two orders of magnitude (100X) greater than those of AA6061. Based on the results of the dissolution behavior study, a Technical Assistance Request (TAR) was first issued to determine if the replacement of AA6061-T6 with AA6063-T6 is feasible for the HFIR carrier lifting bails. A Technical Task Request was then issued to consider AA6063-T5 as well as other alloys to improve possible supply chain issues. The metallurgical properties of the L-bundle (specifically the end caps) were not evaluated in this report because L-Bundle drawings already allow for the use of AA6063-T6 in all structural components. The HFIR carriers are composed of thin-walled components with significant surface areas that allow for relatively quick overall dissolution times. Conversely, the carrier lifting bails and the supporting constituents are composed of solid bars and thick plate regions with relatively small surface areas that experience longer overall dissolution times. While the MTR L-bundle design includes allowances for the materials of construction to be either AA6061-T6 or AA6063-T6, the HFIR carriers are specified to be constructed fully with AA6061-T6 alloy. This report analyzes the recommendations of the dissolution behavior study to replace the materials of construction of the HFIR carrier lifting bails. The analysis considers the operational requirements of the lifting bail and its supporting structures. To decrease dissolution times, the analysis considers direct replacement of the material as well as reductions in the thicknesses of the components to decrease the mass of the elements. Material reductions are considered on options for using either AA6061 and/or AA6063. The calculations are based on specifications from the American Society of Mechanical Engineer (ASME) and The Aluminum Association, Inc. design codes. The analysis finds that direct replacement of the lifting bail material of construction with AA6063-T6, and AA6063-T5 as well as reductions in the dimensions of the lifting bail components are acceptable. Note that this study considers the structural suitability of the alloys. It does not consider their dissolution rates in the dissolvers.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

The best of both worlds – entering the nursing profession with support of a transition programme

Abstract Background Transition into clinical practice for newly graduated nurses is a difficult time, with high stress levels defined by a demanding period of personal and professional acclimatisation. Transitions are complicated and multi‐dimensional, and to understand this process, it is crucial to identify the factors that facilitate or stand in the way of a healthy transition. Aim The phenomenological study aimed to describe newly graduated nurses’ expectations of transitioning into the nursing profession at the start of a clinical nursing introduction programme, including education, supervision, and critical reflection with peers. Method The study was based on seven group interviews with newly graduated nurses. The interviews utilised open‐ended and follow‐up questions and were carried out as a dialogue to enable reflection on the phenomenon of interest. This was explored and illuminated using the reflective lifeworld research approach, based on phenomenological epistemology. Findings “Expectations of transition into the nursing profession via the Clinical Nursing Introduction Programme” is signified by an oscillating movement between uncertainty, security, challenge, and growth on the threshold of a new identity. The phenomenon is constituted by the courage to grow, responsibility and fear, belonging and vulnerability, and support and challenge. Conclusion Transitioning into the nursing profession via the Clinical Nursing Introduction Programme means having the best of both worlds. Newly graduated nurses have the opportunity to receive education and structured support at the same time as they work independently in clinical practice.

Berglund, Mia↗

Optimizing the use of pressurized bladders for the assembly of HL-LHC MQXFB magnets

The use of pressurized bladders for stress control of superconducting magnets was firstly proposed at Lawrence Berkeley National Laboratory in the early 2000s. Since then, the so-called ‘bladders and keys’ procedure has become one of the reference techniques for the assembly of high-field accelerator magnets and demonstrators. Exploiting the advantages of this method is today of critical importance for Nb$_{3}$Sn-based accelerator magnets, whose production requires the preservation of tight stress targets in the superconducting coils to limit the effects of the strain sensitivity and brittleness of the conductor. The present manuscript reports on the results of an experimental campaign focused on the optimization of the ‘bladders and keys’ assembly process in the MQXFB quadrupoles. These 7.2 m long magnets shall be among the first Nb$_{3}$Sn cryomagnets to be installed in a particle accelerator as a part of the High Luminosity upgrade of the LHC. One of the main practical implications of the bladders technique, especially important when applied to long magnets like MQXFB, is that to insert the loading keys, the opening of a certain clearance in the support structure is required. The procedure used so far for MQXF magnets involved an overstress in the coils during bladder inflation. The work presented here shows that such an overshoot can be eliminated thanks to additional bladders properly positioned in the structure. This optimized method was validated in a short model magnet and in a full-length mechanical model, becoming the new baseline for the series production at CERN. Furthermore, the results are supported by numerical predictions using finite element models.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Structural basis for inhibition of the Cation-chloride cotransporter $\mathrm{NKCC1}$ by the diuretic drug bumetanide

Cation-chloride cotransporters (CCCs) NKCC1 and NKCC2 catalyze electroneutral symport of 1 Na + , 1K + , and 2 Cl - across cell membranes. NKCC1 mediates trans-epithelial Cl - secretion and regulates excitability of some neurons and NKCC2 is critical to renal salt reabsorption. Both transporters are inhibited by the so-called loop diuretics including bumetanide, and these drugs are a mainstay for treating edema and hypertension. Here, our single-particle electron cryo-microscopy structures supported by functional studies reveal an outward-facing conformation of NKCC1, showing bumetanide wedged into a pocket in the extracellular ion translocation pathway. Based on these and the previously published inward-facing structures, we define the translocation pathway and the conformational changes necessary for ion translocation. We also identify an NKCC1 dimer with separated transmembrane domains and extensive transmembrane and C-terminal domain interactions. We further define an N-terminal phosphoregulatory domain that interacts with the C-terminal domain, suggesting a mechanism whereby (de)phosphorylation regulates NKCC1 by tuning the strength of this domain association.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

ECAR-6580 Rev 0 ASME Section III, Division 5 Analysis of the MARVEL PCS and GVS Top Corner

The purpose of this Engineering Calculations and Analysis Report (ECAR) is to document the structural evaluation for part of the Microreactor Applications Research Validation and Evaluation (MARVEL) Primary Coolant System (PCS) and Guard Vessel System (GVS). For the PCS this relates specifically to the Distribution Plenum (DP), The Intermediate Heat Exchanger (IHX), and the Upper Downcomer (UD). For the GVS, this will include only the top corner that is machined into the DP Top Plate. These components will be evaluated using the 2021 version of ASME Section III, Division 5 [1] which is a design code that governs the construction of vessels, storage tanks, piping, pumps, valves, supports, core support structures and nonmetallic core components for use in high temperature reactor systems and their supporting systems. Materials at high temperature are subject to creep and fatigue mechanisms that require additional analyses that aren’t covered in ASME Section III, Division 1 rules. Division 5 contains two approaches: elastic or inelastic, however, additional Code Cases specific to Division 5, allow for an Elastic-Perfectly Plastic (EPP) approach. The components analyzed in this ECAR will use a combination of the elastic and EPP approach. Only Design and Service Levels A and B are evaluated in this ECAR. Service Level D evaluations for the entire PCS are documented in ECAR-6564, “MARVEL Project Primary Coolant System Pressure Vessel Stress Documentation” [2] and for the entire GVS are documented in ECAR-6574, “MARVEL Guard Vessel System FEA and ASME Analysis” [3]. The Design and Service Level A and B analyses for the PCS Downcomer piping and Core Barrel are documented in ANL-24/36, "Engineering Calculations and Analysis of the Core Barrel and Downcomer Piping in the MARVEL PCS” [4], and the GVS (except for the top corner) is in ECAR-6574, “MARVEL Guard Vessel System FEA and ASME Analysis.” See Section 2.0 for more detail on the analysis boundaries.

21 - SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLAN↗

Microstructural characterization of nuclear graphite: from the microscale to the nanoscale

Multiple reactor designs use graphite as a moderator of the nuclear reactions and as structural support. During the lifetime of the reactor, multiple aging factors such as neutron irradiation, oxidation, and temperature along with others induce changes in the microstructure and crystal lattice of graphite components. The pore morphology and crystal structure of some phases in graphite can be used to trace the evolution of irradiation defects and mechanical properties of graphite. We present a combination of results from several microscopy techniques to investigate the differences between nuclear graphite grades and the effects of neutron irradiation and oxidation at multiple length scales. This multiscale approach is needed to understand the microstructural variations caused by the raw materials and manufacturing processes as well as how the different phases of graphite are affected by the reactor environment. The results provide insight into the oxidation- and radiation-induced changes of graphite and create a robust baseline of microstructure information that can be used for the selection of materials for the next generation of nuclear power stations. Moreover, the experiments conducted in this work provide an overview of the advantages and limitations of the most common techniques used to characterize nuclear graphite and how these techniques might be applied to study other carbon-based materials used in the nuclear industry.

Arregui Mena, Jose'↗

Mechanistic insights into the catalytic methanol steam reforming performance of Cu/ZrO 2 catalysts by in situ and operando studies

Here, we assessed the catalytic properties of the Cu/ZrO 2 interface in methanol and formaldehyde steam reforming (MSR and FSR) on powder catalysts by using a comparative approach with respect to the influence of the ZrO 2 polymorph support structure (monoclinic (m-)ZrO 2 vs. tetragonal (t-)ZrO 2 ), its synthesis routine and the choice of the precursor material on the CO 2 selectivity. Our studies reveal that ZrO 2 exhibits a pronounced versatility as a support material and its catalytic properties depend most strongly on its surface properties governed by its synthesis, especially by the choice of the Zr precursor. The way of combining the support with copper introduces an additional layer of complexity, but its influence on the MSR performance is limited to a modification of the conditions provided by the ZrO 2 support. Exploiting the comparative approach regarding the Cu-ZrO 2 catalysts in FSR and MSR – including the pure support materials – in combination with in situ Fourier transform infrared (FT-IR) spectroscopy shows that the CO observed in MSR on Cu/m-ZrO 2 can be attributed to a spillover of formaldehyde to the support. Side reactions of m-ZrO 2 are suppressed at lower temperatures due to its lack of highly reactive sites, resulting in a CO 2 -selective MSR performance. In Cu/t-ZrO 2 , however, the amount of CO is higher and a combination of a formaldehyde spillover to the support and a Cu-ZrO 2 phase boundary yielding CO leads to the lower CO 2 selectivity of these samples. An elevated number of defects and reactive Lewis acidic and Brønsted basic centers of t-ZrO 2 explains this increased activity towards side reactions in contrast to Cu/m-ZrO 2 catalysts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

OpenFAST Modeling of the T-Omega Wind Floating Offshore Wind Turbine System

To reduce the cost of offshore wind energy through a more efficient design of the floating support structure, T-Omega Wind developed a novel lightweight and shallow-draft platform concept that aims to achieve a wave-following behavior without resonance amplification. The rotor and generator are carried by four tower legs with each leg supported by a shallow-draft float at the base. In preparation for a more detailed analysis, a coupled aero-hydro-elastic model of the proposed concept is developed in OpenFAST. The detailed modeling approach is presented, including a novel application of the SubDyn substructure dynamics module of OpenFAST to approximate the loads on the axle tube at the tower top from the rotor hub bearings. Preliminary results obtained with the OpenFAST model by rigidifying the substructure and blades indicate that the original sizing of the design can lead to large hub acceleration in the axial/surge and pitch directions due to platform-pitch motion. The high axial acceleration also potentially leads to large bending moments in the four tower legs. To address these issues, an updated design is developed with, among other changes, increased float spacing at the tower base and improved shear-transmitting geometry of the tower legs. The new design suggests significantly reduced extreme hub accelerations under the same conditions even with structural flexibility and will be further analyzed in the future through full aero-hydro-servo-elastic simulations.

FOWT↗

OpenFAST Modeling of the T-Omega Wind Floating Offshore Wind Turbine System

To reduce the cost of offshore wind energy through a more efficient design of the floating support structure, T-Omega Wind developed a novel lightweight and shallow-draft platform concept that aims to achieve a wave-following behavior without resonance amplification. The rotor and generator are carried by four tower legs with each leg supported by a shallow-draft float at the base. In preparation for a more detailed analysis, a coupled aero-hydro-elastic model of the proposed concept is developed in OpenFAST. The detailed modeling approach is presented, including a novel application of the SubDyn substructure dynamics module of OpenFAST to approximate the loads on the axle tube at the tower top from the rotor hub bearings. Preliminary results obtained with the OpenFAST model by rigidifying the substructure and blades indicate that the original sizing of the design can lead to large hub acceleration in the axial/surge and pitch directions due to platform-pitch motion. The high axial acceleration also potentially leads to large bending moments in the four tower legs. To address these issues, an updated design is developed with, among other changes, increased float spacing at the tower base and improved shear-transmitting geometry of the tower legs. The new design suggests significantly reduced extreme hub accelerations under the same conditions even with structural flexibility and will be further analyzed in the future through full aero-hydro-servo-elastic simulations.

ENGINEERING,WIND ENERGY↗