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At least 127 records · Page 7

Providing biological context for GWAS results using eQTL regulatory and co‐expression networks in Populus

Summary Our study utilized genome‐wide association studies (GWAS) to link nucleotide variants to traits in Populus trichocarpa , a species with rapid linkage disequilibrium decay. The aim was to overcome the challenge of interpreting statistical associations at individual loci without sufficient biological context, which often leads to reliance solely on gene annotations from unrelated model organisms. We employed an integrative approach that included GWAS targeting multiple traits using three individual techniques for lignocellulose phenotyping, expression quantitative trait loci (eQTL) analysis to construct transcriptional regulatory networks around each candidate locus and co‐expression analysis to provide biological context for these networks, using lignocellulose biosynthesis in Populus trichocarpa as a case study. The research identified three candidate genes potentially involved in lignocellulose formation, including one previously recognized gene (Potri.005G116800/VND1, a critical regulator of secondary cell wall formation) and two genes (Potri.012G130000/AtSAP9 and Potri.004G202900/BIC1) with newly identified putative roles in lignocellulose biosynthesis. Our integrative approach offers a framework for providing biological context to loci associated with trait variation, facilitating the discovery of new genes and regulatory networks.

59 BASIC BIOLOGICAL SCIENCES↗

Receiver processing for direct-detection optical communication systems.

A model that is sufficiently general to describe the predominant statistical characteristics of the output of many real optical detectors is formulated. This model is used to study the optimum receiver processing for direct-detection optical communication systems. In particular, the structures of detectors and estimators for filtered doubly stochastic Poisson processes (DSPP) observed in additive white Gaussian noise are considered. Representations for the posterior statistics of a vector Markov process that modulates the intensity of the DSPP are obtained.

Hoversten, E. V.↗

Compensation for time delay in flight simulator visual-display systems

A piloted aircraft can be viewed as a closed-loop, man-machine control system. When a simulator pilot is performing a precision maneuver, a delay in the visual display of aircraft response to pilot-control input decreases the stability of the pilot-aircraft system. The less stable system is more difficult to control precisely. Pilot dynamic response and performance change as the pilot attempts to compensate for the decrease in system stability, and these changes bias the simulation results by influencing the pilot's rating of the handling qualities of the simulated aircraft. Delay compensation, designed to restore pilot-aircraft system stability, was evaluated in several studies which are reported here. The studies range from single-axis, tracking-task experiments (with sufficient subjects and trials to establish statistical significance of the results) to a brief evaluation of compensation of a computer-generated-imagery (CGI) visual display system in a full six-degree-of-freedom simulation. The compensation was effective - improvements in pilot performance and workload or aircraft handling-qualities rating (HQR) were observed. Results from recent aircraft handling-qualities research literature which support the compensation design approach are also reviewed.

Crane, D. F.↗

Early changes in gradation styles and rates on Mars

The wide annulus of massifs and knobs of Isidis and Argyre provided sufficiently large areas for meaningful crater statistics of large craters. Counts were made over adjacent and nested areas in order to test consistency and to derive relative age of each basin. Within the Isidis annulus, charateristic terrains provided counting areas for dating contrasting surface process: channeled hummocky terrain, etched terrains, and intermassif channeled plains. The channeled hummocky terrain contains a high channel density of narrow valley networks cutting both primary Isidis features and old craters. The etched terrains represent a broad region outside the inner high relief massifs of southwestern Isidis where numerous irregular plateaus, mesas, and relict craters indicate a different style of erosion. The intermassif channeled plains occur along the inner mountainous ring. Shallow meandering channels form a large integrated drainage system that is linked to numerous smaller intermountainous basins. These ponds and interconnected tributaries extend beyond the primary inner massif ring through broad canyons.

Schultz, Peter H.↗

The Effects of Gravity on Wrinkled Laminar Flames

The effects of gravity are significant to the dynamics of idealized unconfined open premixed flames. Moderate to low turbulence Reynolds number flames, i.e., wrinkled laminar flames, of various unconfined geometries have been used extensively for investigating fundamental processes of turbulent flame propagation and to validate theoretical models. Without the wall constraints, the flames are free to expand and interact with surrounding ambient air. The flow field in which the flame exists is determined by a coupling of burner geometry, flame orientation and the gravity field. These complex interactions raise serious questions regarding the validity of comparing the experimental data of open flames with current theoretical and numerical models that do not include the effects of gravity nor effects of the larger aerodynamic flowfield. Therefore, studies of wrinkled laminar flame in microgravity are needed for a better understanding of the role of gravity on flame characteristics such as the orientation, mean aerodynamics stretch, flame wrinkle size and burning rate. Our approach to characterize and quantify turbulent flame structures under microgravity is to exploit qualitative and quantitative flow visualization techniques coupled with video recording and computer controlled image analysis technologies. The experiments will be carried out in the 2.2 second drop tower at the NASA Lewis Research Center. The longest time scales of typical wrinkled laminar flames in the geometries considered here are in the order of 10 msec. Hence, the duration of the drop is sufficient to obtain the amount of statistical data necessary for characterize turbulent flame structures.

Kostiuk, Larry W.↗

Galaxy pairs in deep HST images: Evidence for evolution in the galaxy merger rate

We use four deep serendipitous fields observed with the Hubble Space Telescope (HST) Wide-Field Camera to constrain the rate of galaxy merging between the current epoch and z approximately equals 0.7. Since most mergers occur between members of bound pairs, the merger rate is given to a good approximation by (half) the rate of disappearance of galaxies in pairs. An objective criterion for pair membership shows that 34% +/- 9% of our HST galaxies with I = 18-22 belong to pairs, compared to 7% locally. This means that about 13% of the galaxy population has disappeared due to merging in the cosmic epoch corresponding to this magnitude interval (or 0.1 approximately less than z approximately less than 0.7). Our pair fraction is a lower limit: correction for pair members falling below our detection threshold might raise the fraction to approximately 50%. Since we address only two-galaxy merging, these values do not include physical systems of higher multiplicity. Incorporating I-band field-galaxy redshift distributions, the pair fraction grows with redshift as alpha(1 + z)(exp 3.5 +/- 0.5) and the merger rate as (1 + z)(exp 2.5 +/- 0.5). This may have significant implications for the interpretation of galaxy counts (disappearance of faint blue galaxies), the cosmological evolution of faint radio sources and quasars (which evolve approximately as (1 + z)(exp 3), the similarity in the power law is necessary but not sufficient evidence for a causal relation), statistics of QSO companions, the galaxy content in distant clusters, and the merging history of a 'typical' galaxy.

Burkey, Jordan M.↗

Space Station Biological Research Project

NASA Ames Research Center is responsible for the development of the Space Station Biological Research Project (SSBRP) which will support non-human life sciences research on the International Space Station Alpha (ISSA). The SSBRP is designed to support both basic research to understand the effect of altered gravity fields on biological systems and applied research to investigate the effects of space flight on biological systems. The SSBRP will provide the necessary habitats to support avian and reptile eggs, cells and tissues, plants and rodents. In addition a habitat to support aquatic specimens will be provided by our international partners. Habitats will be mounted in ISSA compatible racks at u-g and will also be mounted on a 2.5 m diameter centrifuge except for the egg incubator which has an internal centrifuge. The 2.5 m centrifuge will provide artificial gravity levels over the range of 0.01 G to 2 G. The current schedule is to launch the first rack in 1999, the Life Sciences glovebox and a second rack early in 2001, a 4 habitat 2.5 in centrifuge later the same year in its own module, and to upgrade the centrifuge to 8 habitats in 2004. The rodent habitats will be derived from the Advanced Animal Habitat currently under development for the Shuttle program and will be capable of housing either rats or mice individually or in groups (6 rats/group and at least 12 mice/group). The egg incubator will be an upgraded Avian Development Facility also developed for the Shuttle program through a Small Business and Innovative Research grant. The Space Tissue Loss cell culture apparatus, developed by Walter Reed Army Institute of Research, is being considered for the cell and tissue culture habitat. The Life Sciences Glovebox is crucial to all life sciences experiments for specimen manipulation and performance of science procedures. It will provide two levels of containment between the work volume and the crew through the use of seals and negative pressure. The glovebox will accommodate use by two crew persons simultaneously and the capability for real time video down-link and data acquisition. In house testbeds and Phase B studies of the centrifuge validated the concepts of vibration isolation and autobalancing systems to meet the ISSA microgravity requirements. The vibration isolation system is effective above the centrifuge rotation frequency while the autobalancing system on the rotor removes vibration at and below the rotation rate. Torque of the Station, induced by spin-up/spindown of the centrifuge, can be minimized by controlling spin-up/spin-down rates. The SSBRP and ISSA will provide the opportunity to perform long-term, repeatable and high quality science. The long duration increments available on the Station will permit multigeneration studies of both plants and animals which have not previously been possible. The u-g habitat racks and the eight habitat centrifuge will accommodate sufficient number of specimens to permit statistically significant sampling of specimens to investigate the time course of adaptation to altered gravity environments. The centrifuge will, for the first time, permit investigators to use gravity itself as a tool to investigate fundamental processes, to investigate the intensity and duration of gravity to maintain normal structure and function, to separate the effects of u-g from other environmental factors and to examine artificial gravity as a potential countermeasure for the physical deconditioning observed during space flight.

Johnson, Catherine C.↗

Centrifuge Facility for the International Space Station Alpha

The Centrifuge Facility planned for the International Space Station Alpha has under-one considerable redesign over the past year, primarily because the Station is now viewed as a 10 year mission rather than a 30 year mission and because of the need to simply the design to meet budget constraints and a 2000 launch date. The basic elements of the Centrifuge Facility remain the same, i.e., a 2.5 m diameter centrifuge, a micro-g holding unit, plant and animal habitats, a glovebox and a service unit. The centrifuge will still provide the full range of artificial gravity from 0.01 a to 2 - as originally planned; however, the extractor to permit withdrawal of habitats from the centrifuge without stopping the centrifuge has been eliminated. The specimen habitats have also been simplified and are derived from other NASA programs. The Plant Research Unit being developed by the Gravitational Biology Facility will be used to house plants in the Centrifuge Facility. Although not as ambitious as the Centrifuge Facility plant habitat, it will provide much better environmental control and lighting than the current Shuttle based Plant Growth Facility. Similarly, rodents will be housed in the Advanced Animal Habitat being developed for the Shuttle program. The Centrifuge Facility and ISSA will provide the opportunity to perform repeatable, high quality science. The long duration increments available on the Station will permit multigeneration studies on both plants and animals which have not previously been possible. The Centrifuge Facility will accommodate sufficient number of specimens to permit statistically significant sampling of specimens to investigate the time course of adaptation to altered gravity environments. The centrifuge will for the first time permit investigators to use gravity itself as a tool to investigate fundamental processes, to investigate the intensity and duration of gravity to maintain normal structure and function, to separate the effects of micro-g from other 0 environmental factors and to examine artificial gravity as a potential countermeasure for the physical deconditioning observed during spaceflight.

Johnson, Catherine C.↗

Characterization of Magnetoacoustic Emission Related to Structural Properties of Ferromagnets

An extensive study of magnetoacoustic emission (MAE) properties has been performed over the past several years. As a result, the dependence of the spectral characteristics of MAE on certain microstructural variations and uniaxially applied stress in a particular type of low carbon steel are now well known. The embrittlement-causing concentration of certain atomic species, e. g., tin, sulphur, phosphorous etc., at the grain boundaries of this steel creates strong potential barriers resisting the motion of non-180 domain walls which is the source of MAE. (Since the only type of non-180 domain walls in this material are 90 domain walls, the term 90 domain wall will be used throughout this paper in place of non-180 domain wall.) An MAE burst produced during one-half cycle of a hysteresis loop at a low AC magnetic field frequency (e. g., 0.7 Hz) shows two sub-peaks; the leading peak is usually sharp and short-lived, while the trailing peak is usually smooth and long-lasting. It has been shown that the enhanced domain wall-defect interaction, due to the strengthened potential barriers, causes an increase in the asymmetry of the MAE signal by suppressing the leading sub-peak and amplifying the trailing sub-peak. This phenomena is due to the delayed motion of the 90 domain walls. The effect of a tensile stress applied parallel to the external AC magnetic field is to diminish the MAE. On the other hand, the amplitude of the MAE burst has been shown to be a non-monotonic function of the stress amplitude. Recently, our study has concentrated on obtaining quantitative values for parameters computed from the MAE spectra averaged over a sufficient number of cycles to achieve statistical stability. Nevertheless, certain fundamental elements of the MAE characteristics remain unexplained.

Namkung, M.↗

Shell Models of RMHD Turbulence and the Heating of Solar Coronal Loops

A simplified nonlinear numerical model for the development of incompressible magnetohydrodynamics in the presence of a strong magnetic field B|| and stratification, nicknamed 'Shell-Atm,' is presented. In planes orthogonal to the mean field, the nonlinear incompressible dynamics is replaced by two-dimensional shell models for the complex variables u and b, allowing one to reach large Reynolds numbers while at the same time carrying out sufficiently long integrations to obtain good statistics at moderate computational cost. The shell models of different planes are coupled by Alfve'n waves propagating along B||. The model may be applied to open or closed magnetic field configurations where the axial field dominates and the plasma pressure is low; here we apply it to the specific case of a magnetic loop of the solar corona heated by means of turbulence driven by photospheric motions, and we use statistics for its analysis. The Alfven waves interact nonlinearly and form turbulent spectra in the directions perpendicular and, through propagation, also parallel to the mean field. A heating function is obtained and shown to be intermittent; the average heating is consistent with values required for sustaining a hot corona and is proportional to the aspect ratio of the loop to the -1.5 power, and haracteristic properties of heating events are distributed as power laws. Crosscorrelations show a delay of dissipation compared with energy content.

corona↗

Comment on “Advanced Testing of Low, Medium, and High ECS CMIP6 GCM Simulations Versus ERA5-T2m” by N. Scafetta (2022)

Scafetta (2022, https://doi.org/10.1029/2022gl097716) purports to test Coupled Model Intercomparison Project Phase 6 (CMIP6) climate models through a comparison of temperature changes over three decades. Unfortunately, the paper contains numerous conceptual and statistical errors that undermine all of the conclusions. First, no uncertainty is given for the observational temperature difference, making it impossible to assess compatibility with any model result. Second, the CMIP6 data are the ensemble means for each model, but the metric being tested is sensitive to the internal variability and so the full ensemble for each model must be used. When this is corrected, the conclusion that “all models with ECS > 3.0°C overestimate the observed global surface warming” is not sustained. Third, the statistical test in Section 2 would reject all models even in a perfect model setup given sufficient ensemble members, thus the second conclusion “that spatial t-statistics rejects the data-model agreement” is also not sustainable.

CMIP6↗

Comparative differential cuproproteomes of Rhodobacter capsulatus reveal novel copper homeostasis related proteins

Abstract Copper (Cu) is an essential, but toxic, micronutrient for living organisms and cells have developed sophisticated response mechanisms towards both the lack and the excess of Cu in their environments. In this study, we achieved a global view of Cu-responsive changes in the prokaryotic model organism Rhodobacter capsulatus using label-free quantitative differential proteomics. Semi-aerobically grown cells under heterotrophic conditions in minimal medium (∼0.3 μM Cu) were compared with cells supplemented with either 5 μM Cu or with 5 mM of the Cu-chelator bathocuproine sulfonate. Mass spectrometry based bottom-up proteomics of unfractionated cell lysates identified 2430 of the 3632 putative proteins encoded by the genome, producing a robust proteome dataset for R. capsulatus. Use of biological and technical replicates for each growth condition yielded high reproducibility and reliable quantification for 1926 of the identified proteins. Comparison of cells grown under Cu-excess or Cu-depleted conditions to those grown under minimal Cu-sufficient conditions revealed that 75 proteins exhibited statistically significant (p < 0.05) abundance changes, ranging from 2- to 300-fold. A subset of the highly Cu-responsive proteins was orthogonally probed using molecular genetics, validating that several of them were indeed involved in cellular Cu homeostasis.

59 BASIC BIOLOGICAL SCIENCES↗

Economic Storage Size Optimization for Electric Vehicle Extreme-Fast Charging Stations

En-route charging infrastructure for electric vehicles is critical to support transportation needs. These charging stations are likely to have high loads and especially sharp peak loads given fast charging capabilities needed to meet transportation schedules. In order to reduce both strain on distribution grid infrastructure and charging station operational costs, many stations are likely to employ behind the meter storage. This paper demonstrates a behind the meter storage sizing optimization that employs an open-source agent-based vehicle behavior model (BEAM) to determine the best sizing across many scenarios. This optimization and analysis is novel in that it examines how storage size impacts not only charging station cost and peak load, but also vehicle queue times. The optimization is also applied across a wide analysis region with sufficient diversity and numbers to provide novel statistical analysis of optimal sizes.

Aka, Julius↗

Optical probing of supersonic aerodynamic turbulence

Laser quasi-schlieren system and laser shadow-correlation system retrieve flow-related signals sufficient for computing accurate, reproducible correlation peaks. Statistical method for obtaining one-shot measurements of the decay history of turbulent structures in a stationary frame of reference is discussed.

Cikanek, H. A., Jr.↗

The 90-day report for SL4 experiment S019: UV stellar astronomy

The use of Experiment S019 to obtain moderate dispersion stellar spectra extending down to 1300A with sufficient spectral resolution to permit the study of ultraviolet (UV) line spectra and of spectral energy distributions of early-type stars is studied. Data obtained from this experiment should be of sufficient accuracy to permit detailed physical analysis of individual stars and nebulae, but an even more basic consideration is the expectation of obtaining spectra of a sufficient number of stars so that a statistically meaningful survey may be made of the UV spectra of a wide variety of star types. These should include all luminosity classes of spectral types O, B and A, as well as peculiar stars such as Wolf-Rayet stars and Ap or Am stars. An attempt was also made to obtain, in the no-prism mode, low dispersion UV spectra in a number of Milky Way star fields and in nearby galaxies.

Source record↗

Analyses of atmospheric extinction data obtained by astronomers. II - Seasonal variations in astronomical extinction

Archival astronomical atmospheric extinction records obtained from fifteen observatory sites were analyzed by not strictly rigorous statistical averaging procedures in order to obtain sufficiently reliable pictures of the trends and variations in atmospheric transparency for the period 1956-1972. While the northern hemisphere sites reveal definite seasonal variations with maxima occurring during local summer, the southern hemisphere displays little such effect. The only southern hemisphere sites with any variation were in South Africa, where a late winter maximum was observed.

Laulainen, N. S.↗

Candidate substances for space bioprocessing methodology and data specification for benefit evaluation

Analytical and quantitative economic techniques are applied to the evaluation of the economic benefits of a wide range of substances for space bioprocessing. On the basis of expected clinical applications, as well as the size of the patient that could be affected by the clinical applications, eight substances are recommended for further benefit evaluation. Results show that a transitional probability methodology can be used to model at least one clinical application for each of these substances. In each recommended case, the disease and its therapy are sufficiently well understood and documented, and the statistical data is available to operate the model and produce estimates of the impact of new therapy systems on the cost of treatment, morbidity, and mortality. Utilizing the morbidity and mortality information produced by the model, a standard economic technique called the Value of Human Capital is used to estimate the social welfare benefits that could be attributable to the new therapy systems.

Source record↗

The effects of time delay in man-machine control systems: Implications for design of flight simulator Visual-Display-Delay compensation

When human operators are performing precision tracking tasks, their dynamic response can often be modeled by quasilinear describing functions. That fact permits analysis of the effects of delay in certain man machine control systems using linear control system analysis techniques. The analysis indicates that a reduction in system stability is the immediate effect of additional control system delay, and that system characteristics moderate or exaggerate the importance of the delay. A selection of data (simulator and flight test) consistent with the analysis is reviewed. Flight simulator visual-display delay compensation, designed to restore pilot aircraft system stability, was evaluated in several studies which are reviewed here. The studies range from single-axis, tracking-task experiments (with sufficient subjects and trials to establish the statistical significance of the results) to a brief evaluation of compensation of a computer generated imagery (CGI) visual display system in a full six degree of freedom simulation. The compensation was effective, improvements in pilot performance and workload or aircraft handling qualities rating (HQR) were observed. Results from recent aircraft handling qualities research literature, which support the compensation design approach, are also reviewed.

Crane, D. F.↗