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At least 127 records · Page 7

An empirical investigation of organic software product lines

Abstract Software product line engineering is a best practice for managing reuse in families of software systems that is increasingly being applied to novel and emerging domains. In this work we investigate the use of software product line engineering in one of these new domains, synthetic biology. In synthetic biology living organisms are programmed to perform new functions or improve existing functions. These programs are designed and constructed using small building blocks made out of DNA. We conjecture that there are families of products that consist of common and variable DNA parts, and we can leverage product line engineering to help synthetic biologists build, evolve, and reuse DNA parts. In this paper we perform an investigation of domain engineering that leverages an open-source repository of more than 45,000 reusable DNA parts. We show the feasibility of these new types of product line models by identifying features and related artifacts in up to 93.5% of products, and that there is indeed both commonality and variability. We then construct feature models for four commonly engineered functions leading to product lines ranging from 10 to 7.5 × 10 20 products. In a case study we demonstrate how we can use the feature models to help guide new experimentation in aspects of application engineering. Finally, in an empirical study we demonstrate the effectiveness and efficiency of automated reverse engineering on both complete and incomplete sets of products. In the process of these studies, we highlight key challenges and uncovered limitations of existing SPL techniques and tools which provide a roadmap for making SPL engineering applicable to new and emerging domains.

97 MATHEMATICS AND COMPUTING↗

Computationally Guided Design of Multiple Impurities Tolerant Electrode (Final Report)

The current project was based on a combined experimental and computational approach, which can help recommend better cathode materials under multiple impurities conditions. The PI will mainly take in charge of experimental and computational thermodynamics of the selected cathode materials for the SOFC applications under multiple impurities. While the co-PI will run the electrochemical tests of the cathodes recommended and eventually the long-term degradation tests. At the end of the project, a multiple tolerant cathode material based on the combined experimental and computational approach will be recommended and the reliability of the commonly used accelerated testing will be evaluated. It will address multiple impurities poisoning effect of SO2, CO2, Cr and H2O on the LSM, LSCF and LNO cathodes by identifying the formation of the detrimental secondary phases by XRD, SEM and TEM techniques. And further recommended cathode material will be subjected to electrochemical testing and the most promising ones will be applied to long-term tests. The hybrid approach the PI proposed will not only be applied to the design of multiple impurities tolerant cathodes but will also be considered in the future oxygen electrode applications in SOECs or reversible SOCs. This hybrid computational and experimental approach includes four sections: 1) Investigation of single impurity poisoning on LSM, LSCF and LNO cathodes in the presence of SO2, CO2, Cr. In this section, LSM, LSCF cathodes from FuelCellMaterials and LNO cathodes from Sol-Gel synthesis will be heat-treated in the above single impurity. And the formation of the secondary phases as well as the corresponding simulations will be cross compared, which shows good agreement between each other. Meanwhile, the accelerated testing approach will be evaluated in these systems compared with the previous published work to understand the reliability of the approach. 2) Investigation of multiple impurities poisoning on LSM, LSCF and LNO cathodes in the presence of Cr+H2O, SO2+Cr and SO2+Cr+H2O conditions. We have also applied these 3 candidate cathodes under these multiple impurities’ conditions and the long-term degradation mechanism of the multiple impurities will be understood with the help of the combined experimental and computational approach. Meanwhile, the synergistic effect of those impurities will be compared with the individual ones in the same cathode system to further reveal the actual operating conditions. 3) Electrochemical testing and polarization of the recommended cathode. We have demonstrated very low polarization resistance in LSCF (core)-LSM (shell) electrodes using MSD process and analyzed impedance spectra using DRT analysis and confirming that the low polarization resistance in LSM infiltrated MSD cells is due to reduction in polarization resistance associated with O2-adsorption process. 4). Long-term degradation testing. We have developed a versatile MSD-based process to deposit various continuous coatings onto porous scaffolds and established baseline for longer term Cr-impurity testing in future projects.

36 MATERIALS SCIENCE↗

Rapid estimation of frequency response functions by close-range photogrammetry

The accuracy of a rapid method which estimates the frequency response function from stereoscopic dynamic data is computed. It is shown that reversal of the order of the operations of coordinate transformation and Fourier transformation, which provides a significant increase in computational speed, introduces error. A portion of the error, proportional to the perturbation components normal to the camera focal planes, cannot be eliminated. The remaining error may be eliminated by proper scaling of frequency data prior to coordinate transformation. Methods are developed for least squares estimation of the full 3x3 frequency response matrix for a three dimensional structure.

Tripp, J. S.↗

Solar Energetic Proton Access to the Inner Magnetosphere During the September 7–8, 2017 Event

Here, the access of solar energetic protons into the inner magnetosphere on September 7–8, 2017 is investigated by following reversed proton trajectories to compute the proton cutoff energy using the Dartmouth geomagnetic cutoff code (Kress et al., 2010, https://doi.org/10.1029/2009sw000488). The cutoff energies for protons coming from the west and east direction, the minimum and maximum cutoff energy respectively, are calculated every 5 min along the orbit of Van Allen Probes using TS07 and the Lyon-Fedder-Mobarry (LFM) MHD magnetic field model. The result shows that the cutoff energy increases significantly as the radial distance decreases, and that the cutoff energy decreases with the building up of the ring current during magnetic storms. Solar wind dynamic pressure also affects cutoff suppression (Kress et al., 2004, https://doi.org/10.1029/2003gl018599). The LFM-RCM model shows stronger suppression of cutoff energy than TS07 during strong solar wind driving conditions. The simulation result is compared with proton flux measurements, showing consistent variation of the cutoff location during the September 7–8, 2017 geomagnetic storm.

79 ASTRONOMY AND ASTROPHYSICS↗

Detection of severe storms through a tropospheric-ionospheric coupling mechanism

Acoustic-gravity waves were detected by a ground-based ionospheric sounding array, and the location of the wave generation source was determined by a reverse group ray path computation. Computed sources of these waves were located near locations where tornadoes touched down from 2 to 4 hours later. It is suggested that the overshooting and ensuing collapse of convective turrets may be responsible for generating the acoustic-gravity waves observed.

Hung, R. J.↗

Dynamics of severe storms through the study of thermospheric-tropospheric coupling

Atmospheric acoustic-gravity waves associated with severe local thunderstorms, tornadoes, and hurricanes can be studied through the coupling between the thermosphere and the troposphere. Reverse group ray tracing computations of acoustic-gravity waves, observed by an ionospheric Doppler sounder array, show that the wave sources are in the neighborhood of storm systems and the waves are excited prior to the storms. It is suggested that the overshooting and ensuing collapse of convective turrets may be responsible for generating the acoustic-gravity waves observed. The results of this study also show that the study of wave-wave resonant interactions may be a potential tool for investigating the dynamical behavior of severe storm systems using ionospheric observations of atmospheric acoustic-gravity waves associated with severe storms.

Hung, R. J.↗

Ionospsheric observation of enhanced convection-initiated gravity waves during tornadic storms

Atmospheric gravity waves associated with tornadoes, with locally severe storms occuring with tornadoes, and with hurricanes were studied through the coupling between the ionosphere and the troposphere. Reverse group ray tracing computations of gravity waves observed by an ionospheric Doppler sounder array were analyzed. The results of ray tracing computations and comparisons between the computed location of the wave sources and with conventional meteorological data indicate that the computed sources of the waves were near the touchdown of the tornadoes, near the eye of the hurricanes, and directly on the squall line of the severe thunderstorms. The signals excited occurred one hour in advance of the tornadoes and three hours in advance of the hurricanes. Satellite photographs show convective overshooting turrets occurring at the same locations and times the gravity waves were being excited. It is suggested that gravity wave observations, conventional meteorological data, and satellite photographs be combined to develop a remote sensing technique for detecting severe storms.

Hung, R. J.↗

Stress evaluations under rolling/sliding contacts

The state of stress beneath traction drive type of contacts were analyzed. Computing stresses and stress reversals on various planes for points beneath the surface were examined. The effect of tangential and axial friction under gross slip conditions is evaluated with the models. Evaluations were performed on an RC (rolling contact) tester configuration and it is indicated that the classical fatigue stresses are not altered by friction forces typical of lubricated contact. Higher values of friction can result in surface shear reversal that exceeds the stresses at the depth of maximum shear reversal under rolling contact.

Kannel, J. W.↗

Ionospheric remote sensing of medium-scale gravity waves and tornadic storms

Gravity waves associated with severe storms are investigated on the basis of ionospheric sounding using a ground-based Doppler system. Reverse-group ray tracing computations are used to determine the origin of over 20 gravity waves detected within 800 km of Huntsville, Alabama in association with a group of tornadoes, isolated tornadoes in the presence of a squall line, and isolated tornadoes in the absence of a squall line. Gravity waves associated with tornadoes are found either to be generated by thunderstorms with enhanced convection embedded in a squall line, or in an isolated cloud with enhanced convection. The computed wave sources are observed in all cases to be located near the points where the tornadoes touched down more than an hour after wave excitation. Results show that gravity waves play an important role in troposphere-ionosphere coupling during times of intense convection associated with tornadic storm activity.

Hung, R. J.↗

Automatic Differentiation as a tool in engineering design

Automatic Differentiation (AD) is a tool that systematically implements the chain rule of differentiation to obtain the derivatives of functions calculated by computer programs. In this paper, it is assessed as a tool for engineering design. The paper discusses the forward and reverse modes of AD, their computing requirements, and approaches to implementing AD. It continues with application to two different tools to two medium-size structural analysis problems to generate sensitivity information typically necessary in an optimization or design situation. The paper concludes with the observation that AD is to be preferred to finite differencing in most cases, as long as sufficient computer storage is available.

Barthelemy, Jean-Francois M.↗

Rejection of low-molecular weight neutral organics is highly sensitive to reverse osmosis system design and operation

A computational model was developed to investigate the significance of system design and operating conditions on the rejection of neutral, low-MW organics by reverse osmosis for potable reuse. Here, the model demonstrated that the decrease in local rejection as net driving pressure decreases is substantially greater for moderately rejected compounds than for highly rejected compounds. At recovery values less than 70%, the local permeate concentration can exceed the pressure vessel feed concentration for moderately rejected compounds. System-level rejection of moderately rejected compounds is likewise substantially more sensitive to operating conditions than highly rejected compounds. The findings highlight a drawback of relying on rejection results from bench-scale testing that operates at low recovery, which invariably has higher rejection than full-scale systems operating at similar pressure. The analysis demonstrates a trade-off in which the low-pressure, high-recovery operation desired for potable reuse systems can be detrimental to the removal of low-MW neutral organics. The removal of low-MW neutral organics can be improved if organics rejection is explicitly evaluated during the design process.

42 ENGINEERING↗

High-temperature carbon dioxide capture in a porous material with terminal zinc hydride sites

Carbon capture can mitigate point-source carbon dioxide (CO 2 ) emissions, but hurdles remain that impede the widespread adoption of amine-based technologies. Capturing CO 2 at temperatures closer to those of many industrial exhaust streams (>200°C) is of interest, although metal oxide absorbents that operate at these temperatures typically exhibit sluggish CO 2 absorption kinetics and instability to cycling. Here, in this study, we report a porous metal–organic framework featuring terminal zinc hydride sites that reversibly bind CO 2 at temperatures above 200°C—conditions that are unprecedented for intrinsically porous materials. Gas adsorption, structural, spectroscopic, and computational analyses elucidate the rapid, reversible nature of this transformation. Extended cycling and breakthrough analyses reveal that the material is capable of deep carbon capture at low CO 2 concentrations and high temperatures relevant to postcombustion capture.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Computational flow modeling of triply periodic minimal surfaces as feed channel spacers in ultra-high pressure reverse osmosis applications

Triply periodic minimal surfaces (TPMS) are a special class of mathematical surfaces characterized by a high surface area-to-volume ratio. They have generated considerable interest in fields such as acoustics, heat transfer, and membrane-based filtration processes. This study evaluates the performance of four different TPMS designs—Schoen Gyroid, Schoen Crossed Layers of Parallels (CLP), Schoen Transverse Crossed Layers of Parallels (tCLP), and Schwarz-Primitive—when used as feed channel spacers under ultra-high pressure reverse osmosis (UHPRO) conditions, at approximately 200 bar. Our experimentally validated computational fluid dynamics model reveal different flow patterns within the feed channels for each of the four TPMS designs, leading to varying hydrodynamic and permeation properties. Under the simulated UHPRO conditions, the Gyroid and tCLP designs yield up to a 23% increase in average permeate velocity and a 14% reduction in average membrane-surface concentration relative to a non-woven spacer of the same porosity. Furthermore, the enhanced performance comes with an increased feed channel pressure drop, although it only constitutes less than 4% of the operating pressure when extrapolated for a meter-long membrane module. Additionally, the study analyzes the effects of varying inlet velocity and spacer porosity on membrane performance. Overall, this research provides valuable insights into the potential use of TPMS spacers in UHPRO applications.

36 MATERIALS SCIENCE↗

Reverse Osmosis Simulation Data

This dataset consists of computational fluid dynamics (CFD) output for various spacer configurations in a feed-water channel in reverse osmosis (RO) applications. Feed-water channels transport brine solution to the RO membrane surfaces. The spacers embedded in the channels help improve membrane performance by disrupting the concentration boundary layer growth on membrane surfaces. Refer to the "Related Work" resource below for more details. This dataset considers a feed-water channel of length 150mm. The inlet brine velocity and concentration are fixed at 0.1m/s and 100kg/m3 respectively. The diameter of the cylindrical spacers is fixed as 0.3mm and six varying inter-spacer distances of 0.75mm, 1mm, 1.5mm, 2mm, 2.5mm, and 3mm are simulated. The dataset comprising the steady, spatial fields of solute concentration, velocity, and density near each spacer is placed in the folder corresponding to the spacer configuration considered. We run two sets of CFD simulations and include the outputs from both sets for each configuration: (1) with a coarser mesh, producing low-resolution (LR) data of spatial resolution 20x20, and (2) with a finer mesh, producing high-resolution (HR) data of spatial resolution 100x100. These data points can be treated as images with the quantities of interest as their channels and can be used to train machine learning models to learn a mapping from the LR images as inputs to the HR images as outputs.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Subsurface stress evaluations under rolling/sliding contacts

A computer model has been developed for evaluating the subsurface stresses incurred within rolling/sliding (elastic) contacts. The model involves first defining the stress tensor at any point (x, y, or z) beneath the surface in terms of the surface stresses. The stress tensors are analyzed to determine the maximum shear stresses and stress reversals. As a result of computations with the model, several observations were made. For example, the maximum reversing shear stresses are on the plane of the orthogonal shear stress. Further, the magnitude of these stresses is not altered by friction. However, under very high friction (typical of dry contact) surface stresses can dominate over subsurface stresses.

Kannel, J. W.↗

Theoretical characterization of the potential energy surface for the reversible reaction H + O2 yields HO2(asterisk) yields OH + O. III - Computed points to define a global potential energy surface

Computed energies and geometries are reported which, combined with previously published calculations, permit a global representation of the potential energy surface for the reaction H + O2 yields HO2(asterisk) yields OH + O. These new calculations characterize the potential energy surface (PES) for all H atom angles of approach to O2 and for the region of the inner repulsive wall. The region of the T-shaped H-O2 exchange saddle point is connected with the constrained energy minimum (CEM) path, and a new collinear H-O2 exchange saddle point is characterized which lies only 9 kcal/mol above the H + O2 asymptote. A vibrational analysis which utilizes local cubic and quartic polynomial representations of the PES along the CEM path has been carried out. Optimal geometries, energies, and harmonic frequencies are reported along with anharmonic analyses for the O2 and OH asymptotes and for the HO2 minimum region of the PES.

Walch, Stephen P.↗