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At least 127 records · Page 7

Stochastic density functional theory combined with Langevin dynamics for warm dense matter

Here, this study overviews and extends a recently developed stochastic finite-temperature Kohn-Sham density functional theory to study warm dense matter using Langevin dynamics, specifically under periodic boundary conditions. The method's algorithmic complexity exhibits nearly linear scaling with system size and is inversely proportional to the temperature. Additionally, a linear-scaling stochastic approach is introduced to assess the Kubo-Greenwood conductivity, demonstrating exceptional stability for dc conductivity. Utilizing the developed tools, we investigate the equation of state, radial distribution, and electronic conductivity of hydrogen at a temperature of 30 000 K. As for the radial distribution functions, we reveal a transition of hydrogen from gaslike to liquidlike behavior as its density exceeds 4 g/cm 3 . As for the electronic conductivity as a function of the density, we identified a remarkable isosbestic point at frequencies around 7 eV, which may be an additional signature of a gas-liquid transition in hydrogen at 30 000 K.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Explicit Monotone Stable Super-Time-stepping Methods for Finite Time Singularities

We explore a novel way to numerically resolve the scaling behavior of finite-time singularities in solutions of nonlinear parabolic PDEs. The Runge–Kutta–Legendre (RKL) and Runge–Kutta–Gegenbauer (RKG) super-time-stepping methods were originally developed for nonlinear complex physics problems with diffusion. These are multistage single step second-order, forward-in-time methods with no implicit solves. The advantage is that the time-step size for stability scales with stage number 𝑠 as $\mathcal{O}$⁡(𝑠 2 ). Many interesting nonlinear PDEs have finite-time singularities, and the presence of diffusion often limits one to using implicit or semi-implicit time-step methods for stability constraints. Finite-time singularities are particularly challenging due to the large range of scales that one desires to resolve, often with adaptive spatial grids and adaptive time steps. Here, in this study, we show two examples of nonlinear PDEs for which the self-similar singularity structure has time and space scales that are resolvable using the RKL and RKG methods, without forcing even smaller time steps. Compared to commonly used implicit numerical methods, we achieve a significantly smaller run time while maintaining comparable accuracy. We also prove numerical monotonicity for both the RKL and RKG methods under their linear stability conditions for the constant coefficient heat equation, in the case of infinite domain and periodic boundary condition, leading to a theoretical guarantee of the superiority of the RKL and RKG methods over traditional super-time-stepping methods, such as the Runge-Kutta-Chebyshev and the orthogonal Runge-Kutta-Chebyshev methods. Code can be found at https://github.com/ZT220501/SRK-Singularity.

97 MATHEMATICS AND COMPUTING↗

Energy spectrum of two-particle scattering in a periodic box

We aim to compute the discrete energy spectrum for two-body scattering in a three-dimensional box under periodic boundary conditions. The spectrum in the center of mass is obtained by solving the Schödinger equation in a test potential using the Fourier basis. The focus is on how to project the spectrum into the various irreducible representations of the symmetry groups of the box. Four examples are given to show how the infinite-volume spectrum (including both bound and scattering states) is resolved in cubic or elongated boxes, and in systems with integer or half-integer total spin. Such a demonstration is a crucial step in relating the discrete spectrum in the box to the infinite-volume scattering phaseshifts via the Lüscher method.

Computer Science↗

HydraGNN v5.0

HydraGNN v5.0 expands the code base into a more portable, scalable, and flexible framework for scientific graph learning, with particular strength in atomistic machine-learning interatomic potentials and large-scale distributed training. The release adds Fully Sharded Data Parallel (FSDP) support alongside existing DDP and DeepSpeed paths, including FSDP-aware checkpointing and optimizer integration, and introduces a configurable multi-precision training workflow supporting FP32, BF16, and FP64 across GPUs and Intel XPUs. For atomistic modeling, HydraGNN v5.0 strengthens its MLIP capabilities through dynamic graph construction at every forward pass, energy-conserving force prediction via automatic differentiation, and per-atom energy loss formulations, while extending EGNN models to properly handle periodic boundary conditions. The release also broadens model expressiveness through graph-level attribute conditioning, adds new multi-task and model-parallel extensions such as MACE support and encoder/decoder branch optimization, and expands application coverage with integrated examples for datasets including OC25, Nabla2-DFT, QCML, Open Polymers 2026, and OPF. In parallel, HydraGNN v5.0 improves production readiness through performance optimizations for large-scale runs, stratified sampling and linear-regression preprocessing utilities, and tested installation scripts for DOE supercomputers including Frontier, Aurora, Perlmutter, and Andes. Overall, the release advances HydraGNN as a robust software platform for scalable graph neural networks across materials science, chemistry, and scientific machine learning workflows

Lupo Pasini, Massimiliano [Oak Ridge National Labo↗

Surrogate modeling of Cellular-Potts agent-based models as a segmentation task using the U-Net neural network architecture

The Cellular-Potts model is a powerful and ubiquitous framework for developing computational models for simulating complex multicellular biological systems. Cellular-Potts models (CPMs) are often computationally expensive due to the explicit modeling of interactions among large numbers of individual model agents and diffusive fields described by partial differential equations (PDEs). In this work, we develop a convolutional neural network (CNN) surrogate model using a U-Net architecture that accounts for periodic boundary conditions. We use this model to accelerate the evaluation of a mechanistic CPM previously used to investigate in vitro vasculogenesis. The surrogate model was trained to predict 100 computational steps ahead (Monte-Carlo steps, MCS), accelerating simulation evaluations by a factor of 562 times compared to single-core CPM code execution on CPU. Over short timescales of up to 3 recursive evaluations, or 300 MCS, our model captures the emergent behaviors demonstrated by the original Cellular-Potts model such as vessel sprouting, extension and anastomosis, and contraction of vascular lacunae. This approach demonstrates the potential for deep learning to serve as a step toward efficient surrogate models for CPM simulations, enabling faster evaluation of computationally expensive CPM simulations of biological processes.

97 MATHEMATICS AND COMPUTING↗

Stress Analysis and Failure Behavior of SiC/SiC Textile Composite Tubes

A novel method for analyzing tubular textile composites was developed by obtaining a curved representative volume element (RVE) from the transformation of a flat RVE. Periodic boundary conditions were imposed on the curved RVE. The stresses in a transeversely isotropic yarn were compared between the two RVEs. It was found that there was a discrepancy between the two models.

Thandaga Nagaraju, Hemanth↗

Evaluation of Extensional Stiffness Matrix [A]. of Braided Composite Tubes

A novel method for analyzing tubular textile composites was developed by obtaining a curved repeatable unit cell (RUC) from the transformation of a flat RUC. Periodic boundary conditions were imposed on the tubular RUC. The stiffness matrix of the composite was then evaluated using transversely isotropic yarn and isotropic matrix. It was found that the stiffness coefficients A11, A12 of the composite are more sensitive to a change in the radius of the composite compared to A22 and A66.

Thandaga Nagaraju, Hematnh↗

NEAMS-Multiphysics MOOSE End Year Framework Activities FY20

The Multiphysics Object Oriented Simulation Environment (MOOSE) is a general finite element package meant for high performance solution of multiphysics problems in science and engineering. In this report, we present additions and enhancements to MOOSE funded by the Nuclear Engineering Advanced Modeling and Simulation (NEAMS) program. NEAMS-funded MOOSE framework library improvements include: expansion of support for multi-level multi-application restart; enhancement of coupling between native MOOSE applications and external libraries; addition of a sparse automatic differentiation (AD) container enabling non-local degree of freedom coupling; block-specific quadrature rules; further development of an eigenvalue executioner; faster setup of periodic boundary conditions; and creation of a mesh meta-data system streamlining simulation startup. Besides developing the framework library, NEAMS funds were used to overhaul a swath of important MOOSE infrastructure in order to substantially improve user experience. These critical infrastructure changes included adapting MOOSE to python 3, improving the test harness to catch race conditions, and most importantly transitioning MOOSE to use Conda, a globally known packaging system, that greatly eases software adoption.

97 MATHEMATICS AND COMPUTING↗

User Manual - HydraGNN v5.0: Distributed Implementation of Multi-Tasking Graph Neural Networks

This document serves as the user manual for HydraGNN v5.0, a scalable graph neural network (GNN) architecture for simultaneous prediction of multiple target properties using multi-task learning (MTL). This version of HydraGNN has been developed primarily to support the development, training, and deployment of predictive graph-based deep learning (DL) models for atomistic materials modeling. HydraGNN is templated over 13 message-passing policies, including invariant models (GIN, PNA, PNAPlus, GAT, MFC, CGCNN, SAGE, SchNet, DimeNet) and equivariant models (EGNN, PNAEq, PAINN, MACE), and supports distributed training via distributed data parallelism (DDP), DeepSpeed, and Fully Sharded Data Parallelism (FSDP) on leadership-class supercomputers. Although HydraGNN can be applied to problems beyond atomistic materials modeling, its current use is confined to homogeneous graphs. Additional capabilities include machine-learned interatomic potentials with energy-conserving forces, General, Powerful, and Scalable Graph Transformer (GraphGPS) global attention, periodic boundary conditions, hyperparameter optimization, mixed-precision training, and uncertainty quantification.

97 MATHEMATICS AND COMPUTING↗

Infinite temperature at zero energy

We construct a family of static, geometrically local Hamiltonians that inherit eigenstate properties of periodically-driven (Floquet) systems. Our construction is a variation of the Feynman-Kitaev clock -- a well-known mapping between quantum circuits and local Hamiltonians -- where the clock register is given periodic boundary conditions. Assuming the eigenstate thermalization hypothesis (ETH) holds for the input circuit, our construction yields Hamiltonians whose eigenstates have properties characteristic of infinite temperature, like volume-law entanglement entropy, across the whole spectrum -- including the ground state. We then construct a family of exactly solvable Floquet quantum circuits whose eigenstates are shown to obey the ETH at infinite temperature. Combining the two constructions yields a new family of local Hamiltonians with provably volume-law-entangled ground states, and the first such construction where the volume law holds for all contiguous subsystems.

FOS: Physical sciences↗

tobac v1.5: introducing fast 3D tracking, splits and mergers, and other enhancements for identifying and analysing meteorological phenomena

There is a continuously increasing need for reliable feature detection and tracking tools based on objective analysis principles for use with meteorological data. Many tools have been developed over the previous 2 decades that attempt to address this need but most have limitations on the type of data they can be used with, feature computational and/or memory expenses that make them unwieldy with larger datasets, or require some form of data reduction prior to use that limits the tool's utility. The Tracking and Object-Based Analysis of Clouds (tobac) Python package is a modular, open-source tool that improves on the overall generality and utility of past tools. A number of scientific improvements (three spatial dimensions, splits and mergers of features, an internal spectral filtering tool) and procedural enhancements (increased computational efficiency, internal regridding of data, and treatments for periodic boundary conditions) have been included in tobac as a part of the tobac v1.5 update. These improvements have made tobac one of the most robust, powerful, and flexible identification and tracking tools in our field to date and expand its potential use in other fields. Future plans for tobac v2 are also discussed.

54 ENVIRONMENTAL SCIENCES↗

Equilibrium properties of a one-dimensional kinetic system.

One-dimensional systems of N = 500 and 250 particles in equilibrium are numerically simulated utilizing the method of molecular dynamics. Periodic boundary conditions are imposed. The classical two-body interaction potential is short range, repulsive and has a corresponding finite force. The equations of state are determined for densities both less and greater than one. Corresponding theoretical isochores are determined from models based on nearest-neighbor interactions and on a truncated virial expansion, and a comparison is made with the experimental isochores. Time independent radial distributions are constructed numerically and discussed. A change of state from a solidlike state to a fluid-gas state based on the penetrability of the particles is predicted. The transition temperatures are estimated from the radial distribution functions and the nearest-neighbor model. Self-diffusion is observed and the corresponding constants are determined from the velocity autocorrelation functions.

Williams, J. H.↗

Thermodynamics of hydrogen-helium mixtures at high pressure and finite temperature

A technique is reviewed for calculating thermodynamic quantities for mixtures of light elements at high pressure, in the metallic state. Ensemble averages are calculated with Monte Carlo techniques and periodic boundary conditions. Interparticle potentials are assumed to be coulombic, screened by the electrons in dielectric function theory. This method is quantitatively accurate for alloys at pressures above about 10 Mbar. An alloy of equal parts hydrogen and helium by mass appears to remain liquid and mixed for temperatures above about 3000 K, at pressures of about 15 Mbar. The additive volume law is satisfied to within about 10%, but the Gruneisen equation of state gives poor results. A calculation at 1300 K shows evidence of a hydrogen-helium phase separation.

Hubbard, W. B.↗

Mode conversion in periodically disturbed thin-film waveguides

Mode conversion in a periodically perturbed thin-film optical waveguide is studied in detail. Three different types of perturbations are considered: periodic index of refraction of the film, periodic index of refraction of the substrate, and periodic boundary. The applications in filters, mode converters, and distributed feedback lasers are discussed.

Elachi, C.↗

Electrostatic analysis of charge-coupled structures

Package of three computer programs performs two-dimensional electrostatic analysis to determine efficiency of charge transfer. One program can be used to analyze three-electrode charge-coupled device input/output gates, and other two programs can be used to analyze two-phase structures containing two or four electrodes with periodic boundary conditions.

Gassaway, J. D.↗

Computational study of nonlinear plasma waves. I - Simulation model and monochromatic wave propagation. II - Sideband instability and satellite growth

A hybrid plasma simulation model is described and applied to the study of electrostatic wave propagation in a one-dimensional Maxwellian plasma with periodic boundary conditions. The model employs a cloud-in-cell scheme which can drastically reduce the fluctuations in particle simulation models and greatly ease the computational difficulties of the Vlasov equation approach. A grid in velocity space is introduced and the particles are represented by points in the x-v phase space. The model is tested first in the absence of an applied signal and then in the presence of a small-amplitude perturbation. The method is also used to study propagation of an essentially monochromatic plane wave. Results on amplitude oscillation and nonlinear frequency shift are compared with available theories.

Matsuda, Y.↗

Thermodynamics of two-dimensional plasmas or discrete line vortex fluids

The equilibrium properties of a two-dimensional plasma are examined theoretically within the framework of the random-phase approximation. The guiding-center case is of most interest because of the formal equivalence to two-dimensional discrete-line vortex fluids and because of the formal admissibility of negative temperatures. Using a judicious treatment of the periodic boundary conditions, extensive thermodynamics for nonnegative temperatures and a new value for the energy at which the temperature becomes negative are found. An explicit form for the structure function is derived and compared with the result of a Monte Carlo calculation. Good agreement is found for the negative-temperature-threshold prediction and for the general shape of the structure function. An equilibrium energy spectrum is calculated, which for positive temperatures, is the Debye-Hueckel result; for negative temperatures, it predicts an enhanced excitation of the lowest mode, corresponding to macroscopic charge separation.

Seyler, C. E., Jr.↗